HEADER TRANSCRIPTION 11-DEC-19 6TOM TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B KEYWDS CANCER, LYMPHOMA, INHIBITOR, DEGRADER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RODRIGUES,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 3 24-JAN-24 6TOM 1 REMARK REVDAT 2 06-MAY-20 6TOM 1 JRNL REVDAT 1 22-APR-20 6TOM 0 JRNL AUTH B.R.BELLENIE,K.J.CHEUNG,A.VARELA,O.A.PIERRAT,G.W.COLLIE, JRNL AUTH 2 G.M.BOX,M.D.BRIGHT,S.GOWAN,A.HAYES,M.J.RODRIGUES,K.N.SHETTY, JRNL AUTH 3 M.CARTER,O.A.DAVIS,A.T.HENLEY,P.INNOCENTI,L.D.JOHNSON,M.LIU, JRNL AUTH 4 S.DE KLERK,Y.V.LE BIHAN,M.G.LLOYD,P.C.MCANDREW,E.SHEHU, JRNL AUTH 5 R.TALBOT,H.L.WOODWARD,R.BURKE,V.KIRKIN,R.L.M.VAN MONTFORT, JRNL AUTH 6 F.I.RAYNAUD,O.W.ROSSANESE,S.HOELDER JRNL TITL ACHIEVINGIN VIVOTARGET DEPLETION THROUGH THE DISCOVERY AND JRNL TITL 2 OPTIMIZATION OF BENZIMIDAZOLONE BCL6 DEGRADERS. JRNL REF J.MED.CHEM. V. 63 4047 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32275432 JRNL DOI 10.1021/ACS.JMEDCHEM.9B02076 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 944 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 47 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 391 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1951 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 370 REMARK 3 BIN R VALUE (WORKING SET) : 0.1961 REMARK 3 BIN FREE R VALUE : 0.1787 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.37 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 21 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1030 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.17840 REMARK 3 B22 (A**2) : -1.17840 REMARK 3 B33 (A**2) : 2.35680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.122 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.112 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.112 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.106 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1138 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1542 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 409 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 210 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1138 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 152 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 11 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1456 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.21 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.98 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|-1 - 13} REMARK 3 ORIGIN FOR THE GROUP (A): -19.4685 30.1531 1.9681 REMARK 3 T TENSOR REMARK 3 T11: -0.1184 T22: 0.0275 REMARK 3 T33: 0.0257 T12: -0.0614 REMARK 3 T13: -0.0053 T23: 0.0985 REMARK 3 L TENSOR REMARK 3 L11: 5.0234 L22: 3.2979 REMARK 3 L33: 6.9340 L12: 4.2995 REMARK 3 L13: -1.1423 L23: -3.8424 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.2941 S13: 0.1033 REMARK 3 S21: -0.1838 S22: 0.0315 S23: -0.4694 REMARK 3 S31: -0.0791 S32: 0.2721 S33: -0.0059 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|14 - 33} REMARK 3 ORIGIN FOR THE GROUP (A): -36.1506 25.2821 18.3297 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: -0.0450 REMARK 3 T33: 0.0654 T12: 0.0268 REMARK 3 T13: 0.0117 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 4.9107 L22: 2.2332 REMARK 3 L33: 3.8823 L12: 1.5967 REMARK 3 L13: -0.7319 L23: -1.0781 REMARK 3 S TENSOR REMARK 3 S11: 0.2170 S12: -0.2881 S13: 0.3991 REMARK 3 S21: 0.3448 S22: 0.0100 S23: 0.3972 REMARK 3 S31: -0.3702 S32: -0.1625 S33: -0.2270 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|34 - 46} REMARK 3 ORIGIN FOR THE GROUP (A): -39.5033 13.7627 29.8376 REMARK 3 T TENSOR REMARK 3 T11: -0.0193 T22: -0.0217 REMARK 3 T33: -0.0649 T12: -0.0510 REMARK 3 T13: 0.0508 T23: 0.0613 REMARK 3 L TENSOR REMARK 3 L11: 3.8398 L22: 1.7543 REMARK 3 L33: 0.0000 L12: 0.8198 REMARK 3 L13: -3.8451 L23: 1.1302 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: -0.5804 S13: -0.0742 REMARK 3 S21: 0.4883 S22: 0.0840 S23: 0.2891 REMARK 3 S31: 0.1724 S32: -0.2651 S33: -0.1378 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|47 - 61} REMARK 3 ORIGIN FOR THE GROUP (A): -31.8959 9.5547 18.8640 REMARK 3 T TENSOR REMARK 3 T11: 0.0268 T22: -0.0949 REMARK 3 T33: 0.0344 T12: -0.0173 REMARK 3 T13: -0.0226 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 4.1410 L22: 5.0924 REMARK 3 L33: 5.3260 L12: 1.5876 REMARK 3 L13: -0.7311 L23: -2.6120 REMARK 3 S TENSOR REMARK 3 S11: -0.0789 S12: 0.2171 S13: -0.3522 REMARK 3 S21: -0.1444 S22: 0.0400 S23: 0.0036 REMARK 3 S31: 0.4882 S32: 0.0134 S33: 0.0389 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|62 - 68} REMARK 3 ORIGIN FOR THE GROUP (A): -38.9915 1.6892 16.4818 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: -0.0199 REMARK 3 T33: 0.0586 T12: -0.0954 REMARK 3 T13: -0.1367 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 1.0772 L22: 2.2079 REMARK 3 L33: 0.7046 L12: 0.1007 REMARK 3 L13: 1.8323 L23: 2.5945 REMARK 3 S TENSOR REMARK 3 S11: 0.0487 S12: -0.0681 S13: -0.1183 REMARK 3 S21: -0.1287 S22: -0.0815 S23: -0.0196 REMARK 3 S31: 0.1344 S32: -0.3376 S33: 0.0328 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|69 - 92} REMARK 3 ORIGIN FOR THE GROUP (A): -32.3688 13.2831 29.5950 REMARK 3 T TENSOR REMARK 3 T11: -0.0416 T22: -0.1601 REMARK 3 T33: -0.1098 T12: -0.0774 REMARK 3 T13: -0.0412 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 2.8302 L22: 3.2524 REMARK 3 L33: 2.7016 L12: 0.7611 REMARK 3 L13: -0.7177 L23: -0.7712 REMARK 3 S TENSOR REMARK 3 S11: 0.2698 S12: -0.2732 S13: -0.0791 REMARK 3 S21: 0.6737 S22: -0.1250 S23: 0.0683 REMARK 3 S31: 0.0947 S32: -0.0059 S33: -0.1447 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|93 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): -21.8048 21.8628 33.3366 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: -0.0269 REMARK 3 T33: 0.0256 T12: -0.1422 REMARK 3 T13: -0.1156 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 2.5224 L22: -1.2204 REMARK 3 L33: 2.0997 L12: -0.4917 REMARK 3 L13: 0.4640 L23: 3.6285 REMARK 3 S TENSOR REMARK 3 S11: 0.2409 S12: -0.3677 S13: 0.3523 REMARK 3 S21: 0.2795 S22: -0.2005 S23: -0.4085 REMARK 3 S31: -0.0401 S32: -0.0875 S33: -0.0403 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|102 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): -23.4234 10.0930 30.7709 REMARK 3 T TENSOR REMARK 3 T11: -0.0689 T22: -0.1862 REMARK 3 T33: -0.0557 T12: -0.0416 REMARK 3 T13: -0.1170 T23: 0.1079 REMARK 3 L TENSOR REMARK 3 L11: 2.4390 L22: 4.9809 REMARK 3 L33: 2.3769 L12: 2.0854 REMARK 3 L13: -0.8377 L23: -0.8090 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: -0.2634 S13: -0.2559 REMARK 3 S21: 0.5822 S22: -0.3810 S23: -0.4617 REMARK 3 S31: 0.1345 S32: 0.3228 S33: 0.2973 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|115 - 129} REMARK 3 ORIGIN FOR THE GROUP (A): -13.3844 14.4365 30.8167 REMARK 3 T TENSOR REMARK 3 T11: 0.0245 T22: 0.0337 REMARK 3 T33: 0.2708 T12: 0.0075 REMARK 3 T13: -0.0814 T23: 0.1285 REMARK 3 L TENSOR REMARK 3 L11: 10.0488 L22: 6.4763 REMARK 3 L33: 0.0203 L12: -0.9702 REMARK 3 L13: -1.6584 L23: -2.3341 REMARK 3 S TENSOR REMARK 3 S11: -0.0683 S12: 0.2318 S13: -0.1967 REMARK 3 S21: 0.0595 S22: -0.0536 S23: -0.4682 REMARK 3 S31: -0.0580 S32: 0.0773 S33: 0.1219 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292104976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 2.02100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 MICROLITER OF BCL6-BTB AT 10 MG/ML REMARK 280 PLUS 1.5 MICROLITER OF A CRYSTALLISATION SOLUTION CONSISTING OF REMARK 280 0.1 M TRIS PH 7.5 AND 0.80 M NA/K TARTRATE, AGAINST 300 REMARK 280 MICROLITER OF CRYSTALLISATION SOLUTION., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.45967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.91933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.18950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 138.64917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.72983 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.45967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.91933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 138.64917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.18950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.72983 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -33.63950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 58.26532 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.72983 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -14 REMARK 465 PRO A -13 REMARK 465 GLY A -12 REMARK 465 LEU A -11 REMARK 465 ASP A -10 REMARK 465 TYR A -9 REMARK 465 LYS A -8 REMARK 465 ASP A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 LYS A -3 REMARK 465 GLU A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 0 CD1 CD2 REMARK 470 ASP A 6 OD2 REMARK 470 GLN A 64 CD OE1 NE2 REMARK 470 ARG A 94 NH2 REMARK 470 ARG A 98 NE CZ NH1 NH2 REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 LYS A 123 NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 GLU A 129 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 150.51 -48.40 REMARK 500 LEU A 31 18.98 58.94 REMARK 500 SER A 39 -129.58 53.80 REMARK 500 SER A 93 3.59 80.98 REMARK 500 MET A 114 76.86 -116.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NQZ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 DBREF 6TOM A 5 129 UNP P41182 BCL6_HUMAN 5 129 SEQADV 6TOM GLY A -14 UNP P41182 EXPRESSION TAG SEQADV 6TOM PRO A -13 UNP P41182 EXPRESSION TAG SEQADV 6TOM GLY A -12 UNP P41182 EXPRESSION TAG SEQADV 6TOM LEU A -11 UNP P41182 EXPRESSION TAG SEQADV 6TOM ASP A -10 UNP P41182 EXPRESSION TAG SEQADV 6TOM TYR A -9 UNP P41182 EXPRESSION TAG SEQADV 6TOM LYS A -8 UNP P41182 EXPRESSION TAG SEQADV 6TOM ASP A -7 UNP P41182 EXPRESSION TAG SEQADV 6TOM ASP A -6 UNP P41182 EXPRESSION TAG SEQADV 6TOM ASP A -5 UNP P41182 EXPRESSION TAG SEQADV 6TOM ASP A -4 UNP P41182 EXPRESSION TAG SEQADV 6TOM LYS A -3 UNP P41182 EXPRESSION TAG SEQADV 6TOM GLU A -2 UNP P41182 EXPRESSION TAG SEQADV 6TOM ASN A -1 UNP P41182 EXPRESSION TAG SEQADV 6TOM LEU A 0 UNP P41182 EXPRESSION TAG SEQADV 6TOM TYR A 1 UNP P41182 EXPRESSION TAG SEQADV 6TOM PHE A 2 UNP P41182 EXPRESSION TAG SEQADV 6TOM GLN A 3 UNP P41182 EXPRESSION TAG SEQADV 6TOM GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 144 GLY PRO GLY LEU ASP TYR LYS ASP ASP ASP ASP LYS GLU SEQRES 2 A 144 ASN LEU TYR PHE GLN GLY ALA ASP SER CYS ILE GLN PHE SEQRES 3 A 144 THR ARG HIS ALA SER ASP VAL LEU LEU ASN LEU ASN ARG SEQRES 4 A 144 LEU ARG SER ARG ASP ILE LEU THR ASP VAL VAL ILE VAL SEQRES 5 A 144 VAL SER ARG GLU GLN PHE ARG ALA HIS LYS THR VAL LEU SEQRES 6 A 144 MET ALA CYS SER GLY LEU PHE TYR SER ILE PHE THR ASP SEQRES 7 A 144 GLN LEU LYS CYS ASN LEU SER VAL ILE ASN LEU ASP PRO SEQRES 8 A 144 GLU ILE ASN PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE SEQRES 9 A 144 MET TYR THR SER ARG LEU ASN LEU ARG GLU GLY ASN ILE SEQRES 10 A 144 MET ALA VAL MET ALA THR ALA MET TYR LEU GLN MET GLU SEQRES 11 A 144 HIS VAL VAL ASP THR CYS ARG LYS PHE ILE LYS ALA SER SEQRES 12 A 144 GLU HET NQZ A 201 35 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HETNAM NQZ 5-[[2-[(3~{S},5~{R})-4,4-BIS(FLUORANYL)-3,5-DIMETHYL- HETNAM 2 NQZ PIPERIDIN-1-YL]-5-CHLORANYL-PYRIMIDIN-4-YL]AMINO]-1- HETNAM 3 NQZ METHYL-3-(3-METHYL-3-OXIDANYL-BUTYL)BENZIMIDAZOL-2-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NQZ C24 H31 CL F2 N6 O2 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *95(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 THR A 62 1 9 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 GLU A 129 1 16 SHEET 1 AA1 2 TYR A 1 GLN A 3 0 SHEET 2 AA1 2 ILE A 9 PHE A 11 -1 O GLN A 10 N PHE A 2 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SITE 1 AC1 14 ASP A 17 LEU A 25 MET A 51 ALA A 52 SITE 2 AC1 14 CYS A 53 GLY A 55 TYR A 58 GLN A 113 SITE 3 AC1 14 MET A 114 GLU A 115 HOH A 301 HOH A 315 SITE 4 AC1 14 HOH A 351 HOH A 356 SITE 1 AC2 4 TYR A 1 GLN A 3 ASN A 73 HOH A 317 SITE 1 AC3 6 SER A 39 ARG A 40 PRO A 76 GLU A 77 SITE 2 AC3 6 ILE A 78 ASN A 79 SITE 1 AC4 4 GLU A 115 VAL A 118 ASP A 119 HOH A 306 CRYST1 67.279 67.279 166.379 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014863 0.008581 0.000000 0.00000 SCALE2 0.000000 0.017163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006010 0.00000