HEADER HYDROLASE 12-DEC-19 6TOY TITLE CRYSTAL STRUCTURE OF BACILLUS PARALICHENIFORMIS WILD-TYPE ALPHA- TITLE 2 AMYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402; SOURCE 4 GENE: AMY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: NEB10 BETA KEYWDS AMYLASE, STARCH BINDING SITE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.ROZEBOOM,D.B.JANSSEN REVDAT 4 24-JAN-24 6TOY 1 REMARK REVDAT 3 11-NOV-20 6TOY 1 JRNL REVDAT 2 28-OCT-20 6TOY 1 JRNL REVDAT 1 14-OCT-20 6TOY 0 JRNL AUTH N.BOZIC,H.J.ROZEBOOM,N.LONCAR,M.S.SLAVIC,D.B.JANSSEN, JRNL AUTH 2 Z.VUJCIC JRNL TITL CHARACTERIZATION OF THE STARCH SURFACE BINDING SITE ON JRNL TITL 2 BACILLUS PARALICHENIFORMIS ALPHA-AMYLASE. JRNL REF INT.J.BIOL.MACROMOL. V. 165 1529 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 33058974 JRNL DOI 10.1016/J.IJBIOMAC.2020.10.025 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2431 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3422 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 438 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.422 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4074 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3473 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5533 ; 1.477 ; 1.904 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8045 ; 0.975 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 6.012 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;35.919 ;23.919 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;12.399 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.658 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4677 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 937 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 483 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9000 -32.3980 16.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.0345 T22: 0.1165 REMARK 3 T33: 0.0380 T12: 0.0103 REMARK 3 T13: 0.0062 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.4797 L22: 0.5891 REMARK 3 L33: 0.6324 L12: 0.1494 REMARK 3 L13: -0.2237 L23: -0.2796 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: 0.0205 S13: -0.0656 REMARK 3 S21: 0.0066 S22: -0.0231 S23: 0.0448 REMARK 3 S31: 0.0457 S32: 0.0342 S33: 0.0442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6TOY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.82800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 1BLI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42 -46 % TACSIMATE, 10 MM CACL2, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.25500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.38250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.12750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 141.38250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.12750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 261 O HOH A 601 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 214 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 61.71 -100.89 REMARK 500 LEU A 64 39.16 -90.37 REMARK 500 ASP A 124 87.44 -158.84 REMARK 500 TYR A 150 -29.29 75.09 REMARK 500 LEU A 196 -54.60 -122.77 REMARK 500 TYR A 198 -145.95 49.60 REMARK 500 LYS A 237 114.01 -38.23 REMARK 500 SER A 337 62.81 -165.07 REMARK 500 PHE A 403 76.40 -102.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 104 OD1 REMARK 620 2 ASP A 194 O 101.8 REMARK 620 3 ASP A 194 OD1 162.7 83.9 REMARK 620 4 ASP A 200 OD1 83.8 77.9 113.5 REMARK 620 5 ASP A 200 OD2 126.1 88.1 70.0 46.3 REMARK 620 6 HIS A 235 O 82.9 90.8 80.7 160.4 150.5 REMARK 620 7 HOH A 805 O 83.6 161.6 96.2 85.2 74.8 107.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD1 REMARK 620 2 ASP A 161 OD2 52.4 REMARK 620 3 ALA A 181 O 80.5 88.1 REMARK 620 4 ASP A 183 OD1 129.4 77.8 108.8 REMARK 620 5 ASP A 202 OD1 82.6 91.6 158.8 91.8 REMARK 620 6 ASP A 204 OD2 153.5 154.1 95.2 76.8 94.2 REMARK 620 7 HOH A 878 O 74.9 127.3 82.1 153.8 81.3 78.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD2 REMARK 620 2 ASP A 183 OD2 88.8 REMARK 620 3 ASP A 194 OD1 133.3 86.5 REMARK 620 4 ASP A 194 OD2 86.2 89.6 47.4 REMARK 620 5 ASP A 200 OD2 118.7 152.0 71.4 87.9 REMARK 620 6 ILE A 201 O 105.2 87.9 121.0 168.3 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 300 O REMARK 620 2 TYR A 302 O 100.9 REMARK 620 3 HIS A 406 O 152.3 81.0 REMARK 620 4 ASN A 407 OD1 82.9 144.8 80.3 REMARK 620 5 ASP A 430 OD1 104.3 125.4 96.5 86.3 REMARK 620 6 ASP A 430 OD2 87.9 82.4 119.5 132.8 51.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 509 DBREF 6TOY A 1 483 UNP I3P686 I3P686_BACLI 1 483 SEQRES 1 A 483 ALA SER LEU ASN GLY THR LEU MET GLN TYR PHE GLU TRP SEQRES 2 A 483 TYR MET PRO ASN ASP GLY GLN HIS TRP LYS ARG LEU GLN SEQRES 3 A 483 ASN ASP SER ALA TYR LEU ALA GLU HIS GLY ILE THR ALA SEQRES 4 A 483 VAL TRP ILE PRO PRO ALA TYR LYS GLY THR SER GLN ASP SEQRES 5 A 483 ASP VAL GLY TYR GLY ALA TYR ASP LEU TYR ASP LEU GLY SEQRES 6 A 483 GLU PHE HIS GLN LYS GLY THR VAL ARG THR LYS TYR GLY SEQRES 7 A 483 THR LYS GLY GLU LEU GLN SER ALA ILE ASN SER LEU HIS SEQRES 8 A 483 SER ARG ASP ILE ASN VAL TYR GLY ASP VAL VAL ILE ASN SEQRES 9 A 483 HIS LYS GLY GLY ALA ASP ALA THR GLU TYR VAL THR ALA SEQRES 10 A 483 VAL GLU VAL ASP PRO ALA ASP ARG ASN ARG VAL THR SER SEQRES 11 A 483 GLY GLU GLN ARG ILE LYS ALA TRP THR HIS PHE GLN PHE SEQRES 12 A 483 PRO GLY ARG GLY SER THR TYR SER ASP PHE LYS TRP TYR SEQRES 13 A 483 TRP TYR HIS PHE ASP GLY THR ASP TRP ASP GLU SER ARG SEQRES 14 A 483 LYS LEU ASN ARG ILE TYR LYS PHE GLN GLY LYS ALA TRP SEQRES 15 A 483 ASP TRP GLU VAL SER ASN GLU ASN GLY ASN TYR ASP TYR SEQRES 16 A 483 LEU MET TYR ALA ASP ILE ASP TYR ASP HIS PRO ASP VAL SEQRES 17 A 483 THR ALA GLU ILE LYS ARG TRP GLY THR TRP TYR ALA ASN SEQRES 18 A 483 GLU LEU GLN LEU ASP GLY PHE ARG LEU ASP ALA VAL LYS SEQRES 19 A 483 HIS ILE LYS PHE SER PHE LEU ARG ASP TRP VAL ASN HIS SEQRES 20 A 483 VAL ARG GLU LYS THR GLY LYS GLU MET PHE THR VAL ALA SEQRES 21 A 483 GLU TYR TRP GLN ASN ASP LEU GLY ALA LEU GLU ASN TYR SEQRES 22 A 483 LEU ASN LYS THR ASN PHE ASN HIS SER VAL PHE ASP VAL SEQRES 23 A 483 PRO LEU HIS TYR GLN PHE HIS ALA ALA SER THR GLN GLY SEQRES 24 A 483 GLY GLY TYR ASP MET ARG LYS LEU LEU ASN GLY THR VAL SEQRES 25 A 483 VAL SER LYS HIS PRO VAL LYS ALA VAL THR PHE VAL ASP SEQRES 26 A 483 ASN HIS ASP THR GLN PRO GLY GLN SER LEU GLU SER THR SEQRES 27 A 483 VAL GLN THR TRP PHE LYS PRO LEU ALA TYR ALA PHE ILE SEQRES 28 A 483 LEU THR ARG GLU ALA GLY TYR PRO GLN ILE PHE TYR GLY SEQRES 29 A 483 ASP MET TYR GLY THR LYS GLY ALA SER GLN ARG GLU ILE SEQRES 30 A 483 PRO ALA LEU LYS HIS LYS ILE GLU PRO ILE LEU LYS ALA SEQRES 31 A 483 ARG LYS GLN TYR ALA TYR GLY ALA GLN HIS ASP TYR PHE SEQRES 32 A 483 ASP HIS HIS ASN ILE VAL GLY TRP THR ARG GLU GLY ASP SEQRES 33 A 483 SER SER VAL ALA ASN SER GLY LEU ALA ALA LEU ILE THR SEQRES 34 A 483 ASP GLY PRO GLY GLY THR LYS ARG MET TYR VAL GLY ARG SEQRES 35 A 483 GLN ASN ALA GLY GLU THR TRP HIS ASP ILE THR GLY ASN SEQRES 36 A 483 ARG SER ASP SER VAL VAL ILE ASN ALA GLU GLY TRP GLY SEQRES 37 A 483 GLU PHE HIS VAL ASN GLY GLY SER VAL SER ILE TYR VAL SEQRES 38 A 483 GLN ARG HET CA A 501 1 HET CA A 502 1 HET NA A 503 1 HET NA A 504 1 HET MLI A 505 7 HET FMT A 506 3 HET ACY A 507 4 HET ACY A 508 4 HET ACY A 509 4 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM MLI MALONATE ION HETNAM FMT FORMIC ACID HETNAM ACY ACETIC ACID FORMUL 2 CA 2(CA 2+) FORMUL 4 NA 2(NA 1+) FORMUL 6 MLI C3 H2 O4 2- FORMUL 7 FMT C H2 O2 FORMUL 8 ACY 3(C2 H4 O2) FORMUL 11 HOH *438(H2 O) HELIX 1 AA1 GLN A 20 HIS A 35 1 16 HELIX 2 AA2 THR A 79 ARG A 93 1 15 HELIX 3 AA3 TYR A 156 TYR A 158 5 3 HELIX 4 AA4 HIS A 205 GLN A 224 1 20 HELIX 5 AA5 ALA A 232 ILE A 236 5 5 HELIX 6 AA6 LYS A 237 GLY A 253 1 17 HELIX 7 AA7 ASP A 266 THR A 277 1 12 HELIX 8 AA8 ASP A 285 GLN A 298 1 14 HELIX 9 AA9 ASP A 303 ASN A 309 5 7 HELIX 10 AB1 THR A 311 HIS A 316 1 6 HELIX 11 AB2 PHE A 343 ARG A 354 1 12 HELIX 12 AB3 TYR A 363 GLY A 368 1 6 HELIX 13 AB4 LEU A 380 TYR A 394 1 15 HELIX 14 AB5 GLY A 441 ALA A 445 5 5 SHEET 1 AA1 9 LEU A 7 GLN A 9 0 SHEET 2 AA1 9 ALA A 39 ILE A 42 1 O TRP A 41 N MET A 8 SHEET 3 AA1 9 ASN A 96 VAL A 101 1 O TYR A 98 N VAL A 40 SHEET 4 AA1 9 GLY A 227 LEU A 230 1 O ARG A 229 N VAL A 101 SHEET 5 AA1 9 PHE A 257 ALA A 260 1 O VAL A 259 N LEU A 230 SHEET 6 AA1 9 SER A 282 PHE A 284 1 O SER A 282 N THR A 258 SHEET 7 AA1 9 ALA A 320 PHE A 323 1 O VAL A 321 N VAL A 283 SHEET 8 AA1 9 TYR A 358 PHE A 362 1 O TYR A 358 N ALA A 320 SHEET 9 AA1 9 LEU A 7 GLN A 9 1 N LEU A 7 O PRO A 359 SHEET 1 AA2 6 HIS A 105 LYS A 106 0 SHEET 2 AA2 6 ALA A 199 ILE A 201 -1 O ALA A 199 N LYS A 106 SHEET 3 AA2 6 PHE A 160 THR A 163 -1 N ASP A 161 O ASP A 200 SHEET 4 AA2 6 TYR A 175 PHE A 177 -1 O TYR A 175 N THR A 163 SHEET 5 AA2 6 ALA A 111 ASP A 121 -1 N VAL A 118 O LYS A 176 SHEET 6 AA2 6 ASP A 124 VAL A 128 -1 O ARG A 127 N ASP A 121 SHEET 1 AA3 6 HIS A 105 LYS A 106 0 SHEET 2 AA3 6 ALA A 199 ILE A 201 -1 O ALA A 199 N LYS A 106 SHEET 3 AA3 6 PHE A 160 THR A 163 -1 N ASP A 161 O ASP A 200 SHEET 4 AA3 6 TYR A 175 PHE A 177 -1 O TYR A 175 N THR A 163 SHEET 5 AA3 6 ALA A 111 ASP A 121 -1 N VAL A 118 O LYS A 176 SHEET 6 AA3 6 GLN A 133 HIS A 140 -1 O ILE A 135 N VAL A 115 SHEET 1 AA4 6 GLN A 399 TYR A 402 0 SHEET 2 AA4 6 ILE A 408 ARG A 413 -1 O GLY A 410 N TYR A 402 SHEET 3 AA4 6 LEU A 424 THR A 429 -1 O ALA A 426 N TRP A 411 SHEET 4 AA4 6 VAL A 477 GLN A 482 -1 O TYR A 480 N ALA A 425 SHEET 5 AA4 6 THR A 448 ASP A 451 -1 N HIS A 450 O VAL A 481 SHEET 6 AA4 6 SER A 459 VAL A 461 -1 O VAL A 460 N TRP A 449 SHEET 1 AA5 2 GLY A 434 TYR A 439 0 SHEET 2 AA5 2 TRP A 467 VAL A 472 -1 O GLY A 468 N MET A 438 LINK OD1 ASN A 104 CA CA A 501 1555 1555 2.40 LINK OD1 ASP A 161 CA CA A 502 1555 1555 2.39 LINK OD2 ASP A 161 CA CA A 502 1555 1555 2.55 LINK OD2 ASP A 161 NA NA A 503 1555 1555 2.39 LINK O ALA A 181 CA CA A 502 1555 1555 2.32 LINK OD1 ASP A 183 CA CA A 502 1555 1555 2.32 LINK OD2 ASP A 183 NA NA A 503 1555 1555 2.48 LINK O ASP A 194 CA CA A 501 1555 1555 2.36 LINK OD1 ASP A 194 CA CA A 501 1555 1555 2.35 LINK OD1 ASP A 194 NA NA A 503 1555 1555 2.94 LINK OD2 ASP A 194 NA NA A 503 1555 1555 2.41 LINK OD1 ASP A 200 CA CA A 501 1555 1555 2.34 LINK OD2 ASP A 200 CA CA A 501 1555 1555 3.00 LINK OD2 ASP A 200 NA NA A 503 1555 1555 2.32 LINK O ILE A 201 NA NA A 503 1555 1555 2.41 LINK OD1 ASP A 202 CA CA A 502 1555 1555 2.28 LINK OD2 ASP A 204 CA CA A 502 1555 1555 2.39 LINK O HIS A 235 CA CA A 501 1555 1555 2.26 LINK O GLY A 300 NA NA A 504 1555 1555 2.48 LINK O TYR A 302 NA NA A 504 1555 1555 2.13 LINK O HIS A 406 NA NA A 504 1555 1555 2.60 LINK OD1 ASN A 407 NA NA A 504 1555 1555 2.43 LINK OD1 ASP A 430 NA NA A 504 1555 1555 2.52 LINK OD2 ASP A 430 NA NA A 504 1555 1555 2.54 LINK CA CA A 501 O HOH A 805 1555 1555 2.52 LINK CA CA A 502 O HOH A 878 1555 1555 2.45 CISPEP 1 TRP A 184 GLU A 185 0 0.04 CISPEP 2 TRP A 184 GLU A 185 0 1.61 SITE 1 AC1 5 ASN A 104 ASP A 194 ASP A 200 HIS A 235 SITE 2 AC1 5 HOH A 805 SITE 1 AC2 6 ASP A 161 ALA A 181 ASP A 183 ASP A 202 SITE 2 AC2 6 ASP A 204 HOH A 878 SITE 1 AC3 5 ASP A 161 ASP A 183 ASP A 194 ASP A 200 SITE 2 AC3 5 ILE A 201 SITE 1 AC4 5 GLY A 300 TYR A 302 HIS A 406 ASN A 407 SITE 2 AC4 5 ASP A 430 SITE 1 AC5 6 ALA A 232 LYS A 234 HIS A 235 GLU A 261 SITE 2 AC5 6 HOH A 611 HOH A 675 SITE 1 AC6 6 ASP A 164 LEU A 171 ASN A 172 MET A 197 SITE 2 AC6 6 TYR A 198 HOH A 603 SITE 1 AC7 3 TYR A 114 ARG A 134 HOH A 620 SITE 1 AC8 3 ARG A 437 ASN A 463 TRP A 467 SITE 1 AC9 4 ARG A 214 THR A 217 HIS A 247 LYS A 251 CRYST1 83.500 83.500 188.510 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011976 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005305 0.00000