HEADER CELL ADHESION 14-DEC-19 6TPU TITLE CRYSTAL STRUCTURES OF FNIII DOMAIN THREE AND FOUR OF THE HUMAN TITLE 2 LEUCOCYTE COMMON ANTIGEN-RELATED PROTEIN, LAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LEUKOCYTE COMMON ANTIGEN RELATED,LAR; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRF, LAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FIBRONECTIN TYPE-III, ADHESION PROTEIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.P.VILSTRUP,S.S.THIRUP,A.SIMONSEN,T.BIRKEFELDT,D.STRANDBYGAARD REVDAT 2 24-JAN-24 6TPU 1 REMARK REVDAT 1 13-MAY-20 6TPU 0 JRNL AUTH J.VILSTRUP,A.SIMONSEN,T.BIRKEFELDT,D.STRANDBYGARD,J.LYNGSO, JRNL AUTH 2 J.S.PEDERSEN,S.THIRUP JRNL TITL CRYSTAL AND SOLUTION STRUCTURES OF FRAGMENTS OF THE HUMAN JRNL TITL 2 LEUCOCYTE COMMON ANTIGEN-RELATED PROTEIN. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 76 406 2020 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 32355037 JRNL DOI 10.1107/S2059798320003885 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 54966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4100 - 3.7400 1.00 3862 143 0.1362 0.1453 REMARK 3 2 3.7300 - 2.9700 1.00 3809 142 0.1423 0.1798 REMARK 3 3 2.9600 - 2.5900 1.00 3819 145 0.1677 0.1963 REMARK 3 4 2.5900 - 2.3500 1.00 3808 148 0.1752 0.2182 REMARK 3 5 2.3500 - 2.1800 1.00 3799 135 0.1671 0.1855 REMARK 3 6 2.1800 - 2.0600 1.00 3814 139 0.1596 0.1817 REMARK 3 7 2.0600 - 1.9500 1.00 3811 145 0.1623 0.2195 REMARK 3 8 1.9500 - 1.8700 1.00 3801 140 0.1731 0.2256 REMARK 3 9 1.8700 - 1.8000 1.00 3801 136 0.2000 0.2384 REMARK 3 10 1.8000 - 1.7300 1.00 3795 144 0.2015 0.2463 REMARK 3 11 1.7300 - 1.6800 1.00 3804 147 0.2266 0.2781 REMARK 3 12 1.6800 - 1.6300 0.99 3735 131 0.2633 0.2743 REMARK 3 13 1.6300 - 1.5900 0.97 3654 147 0.3215 0.3285 REMARK 3 14 1.5900 - 1.5500 0.97 3675 137 0.3466 0.3740 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3239 REMARK 3 ANGLE : 1.131 4456 REMARK 3 CHIRALITY : 0.078 491 REMARK 3 PLANARITY : 0.009 589 REMARK 3 DIHEDRAL : 23.432 1220 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 512 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.1798 5.5450 -58.4625 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.2016 REMARK 3 T33: 0.2424 T12: 0.0038 REMARK 3 T13: -0.0240 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.4299 L22: 4.3025 REMARK 3 L33: 0.7051 L12: 0.1278 REMARK 3 L13: 0.1371 L23: 1.4960 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.1027 S13: -0.0821 REMARK 3 S21: 0.3952 S22: 0.0379 S23: -0.5238 REMARK 3 S31: 0.1735 S32: -0.0088 S33: -0.0876 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 528 THROUGH 539 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.9654 14.4190 -51.3939 REMARK 3 T TENSOR REMARK 3 T11: 0.2128 T22: 0.2281 REMARK 3 T33: 0.2310 T12: -0.0099 REMARK 3 T13: -0.0263 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.9204 L22: 4.7190 REMARK 3 L33: 3.2173 L12: 0.4739 REMARK 3 L13: 0.2828 L23: 1.9176 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.3655 S13: 0.1786 REMARK 3 S21: 0.4756 S22: 0.1092 S23: -0.0889 REMARK 3 S31: -0.0402 S32: 0.1022 S33: -0.1227 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 540 THROUGH 561 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.1028 7.8149 -63.4130 REMARK 3 T TENSOR REMARK 3 T11: 0.1530 T22: 0.1913 REMARK 3 T33: 0.1568 T12: 0.0204 REMARK 3 T13: -0.0179 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.2750 L22: 1.5943 REMARK 3 L33: 3.0464 L12: 0.2752 REMARK 3 L13: 0.6536 L23: 0.0314 REMARK 3 S TENSOR REMARK 3 S11: 0.1332 S12: 0.0745 S13: -0.1933 REMARK 3 S21: -0.0656 S22: -0.1305 S23: 0.0821 REMARK 3 S31: 0.1444 S32: -0.2402 S33: -0.0198 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 562 THROUGH 576 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.0780 0.8342 -57.8302 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.2003 REMARK 3 T33: 0.2084 T12: -0.0041 REMARK 3 T13: -0.0218 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.6252 L22: 3.9553 REMARK 3 L33: 4.4771 L12: -0.7304 REMARK 3 L13: -1.0971 L23: 3.5092 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.0269 S13: -0.1896 REMARK 3 S21: 0.3028 S22: -0.1501 S23: 0.0306 REMARK 3 S31: 0.2759 S32: -0.1997 S33: 0.1575 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 577 THROUGH 622 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.3468 -4.9216 -68.7255 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.1918 REMARK 3 T33: 0.1567 T12: 0.0210 REMARK 3 T13: 0.0069 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.1893 L22: 2.8554 REMARK 3 L33: 0.3257 L12: -0.1654 REMARK 3 L13: 0.0433 L23: 0.8197 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: 0.0648 S13: -0.0208 REMARK 3 S21: -0.0664 S22: -0.0484 S23: -0.0249 REMARK 3 S31: 0.0025 S32: -0.0260 S33: -0.0057 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 623 THROUGH 659 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.5821 -29.9658 -74.0553 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.1784 REMARK 3 T33: 0.1489 T12: 0.0087 REMARK 3 T13: -0.0106 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.0202 L22: 1.5144 REMARK 3 L33: 1.9532 L12: 0.2560 REMARK 3 L13: 0.1991 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: 0.0406 S13: 0.0713 REMARK 3 S21: -0.1358 S22: -0.0362 S23: 0.0604 REMARK 3 S31: -0.0650 S32: -0.0849 S33: 0.0783 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 660 THROUGH 678 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.3698 -34.2274 -80.0243 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.1899 REMARK 3 T33: 0.1754 T12: 0.0269 REMARK 3 T13: 0.0188 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.7770 L22: 5.1035 REMARK 3 L33: 3.1129 L12: 0.1889 REMARK 3 L13: 0.3813 L23: 0.9380 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: 0.2240 S13: -0.0517 REMARK 3 S21: -0.3006 S22: 0.0209 S23: -0.2909 REMARK 3 S31: -0.0109 S32: 0.3481 S33: -0.0620 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 679 THROUGH 688 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.9360 -32.1268 -72.1106 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.1879 REMARK 3 T33: 0.1921 T12: 0.0044 REMARK 3 T13: -0.0120 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.1210 L22: 4.2053 REMARK 3 L33: 1.8799 L12: -0.0445 REMARK 3 L13: 0.3733 L23: 1.0074 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: -0.1810 S13: -0.1119 REMARK 3 S21: 0.1269 S22: -0.2008 S23: 0.2615 REMARK 3 S31: 0.1030 S32: -0.1748 S33: 0.1685 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 689 THROUGH 705 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.6531 -33.4159 -74.2508 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.1611 REMARK 3 T33: 0.2175 T12: 0.0452 REMARK 3 T13: -0.0361 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.2727 L22: 2.5980 REMARK 3 L33: 2.6882 L12: 0.2106 REMARK 3 L13: 0.4011 L23: 0.5525 REMARK 3 S TENSOR REMARK 3 S11: 0.1917 S12: 0.0404 S13: -0.1151 REMARK 3 S21: 0.3496 S22: -0.2330 S23: 0.2287 REMARK 3 S31: 0.4294 S32: -0.1889 S33: 0.0022 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 514 THROUGH 600 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.3729 -24.1076 -60.1212 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1591 REMARK 3 T33: 0.1517 T12: -0.0040 REMARK 3 T13: 0.0017 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.4002 L22: 2.7308 REMARK 3 L33: 2.2319 L12: -0.6973 REMARK 3 L13: 0.5881 L23: -0.8275 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.2283 S13: -0.2865 REMARK 3 S21: 0.1277 S22: -0.0205 S23: 0.1284 REMARK 3 S31: 0.0681 S32: -0.0063 S33: -0.0218 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 601 THROUGH 706 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.3093 16.0351 -76.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.3089 T22: 0.2291 REMARK 3 T33: 0.1978 T12: -0.0047 REMARK 3 T13: 0.0526 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.5696 L22: 2.3402 REMARK 3 L33: 1.8970 L12: 0.6284 REMARK 3 L13: -0.5010 L23: -1.1192 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.1969 S13: 0.0598 REMARK 3 S21: -0.6810 S22: 0.0244 S23: -0.2122 REMARK 3 S31: -0.0277 S32: 0.0467 S33: 0.0117 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54988 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 43.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2EDX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM CITRATE TRIBASIC PH REMARK 280 7.0, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.64500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.64500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 706 REMARK 465 GLY B 512 REMARK 465 ALA B 513 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 514 CB CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 581 CA CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 533 O HOH B 902 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 524 -166.79 -165.32 REMARK 500 ASP B 704 47.36 -157.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 802 DBREF 6TPU A 513 706 UNP P10586 PTPRF_HUMAN 513 706 DBREF 6TPU B 513 706 UNP P10586 PTPRF_HUMAN 513 706 SEQADV 6TPU GLY A 512 UNP P10586 EXPRESSION TAG SEQADV 6TPU GLY B 512 UNP P10586 EXPRESSION TAG SEQRES 1 A 195 GLY ALA GLN PRO ALA ASP PHE GLN ALA GLU VAL GLU SER SEQRES 2 A 195 ASP THR ARG ILE GLN LEU SER TRP LEU LEU PRO PRO GLN SEQRES 3 A 195 GLU ARG ILE ILE MET TYR GLU LEU VAL TYR TRP ALA ALA SEQRES 4 A 195 GLU ASP GLU ASP GLN GLN HIS LYS VAL THR PHE ASP PRO SEQRES 5 A 195 THR SER SER TYR THR LEU GLU ASP LEU LYS PRO ASP THR SEQRES 6 A 195 LEU TYR ARG PHE GLN LEU ALA ALA ARG SER ASP MET GLY SEQRES 7 A 195 VAL GLY VAL PHE THR PRO THR ILE GLU ALA ARG THR ALA SEQRES 8 A 195 GLN SER THR PRO SER ALA PRO PRO GLN LYS VAL MET CYS SEQRES 9 A 195 VAL SER MET GLY SER THR THR VAL ARG VAL SER TRP VAL SEQRES 10 A 195 PRO PRO PRO ALA ASP SER ARG ASN GLY VAL ILE THR GLN SEQRES 11 A 195 TYR SER VAL ALA TYR GLU ALA VAL ASP GLY GLU ASP ARG SEQRES 12 A 195 GLY ARG HIS VAL VAL ASP GLY ILE SER ARG GLU HIS SER SEQRES 13 A 195 SER TRP ASP LEU VAL GLY LEU GLU LYS TRP THR GLU TYR SEQRES 14 A 195 ARG VAL TRP VAL ARG ALA HIS THR ASP VAL GLY PRO GLY SEQRES 15 A 195 PRO GLU SER SER PRO VAL LEU VAL ARG THR ASP GLU ASP SEQRES 1 B 195 GLY ALA GLN PRO ALA ASP PHE GLN ALA GLU VAL GLU SER SEQRES 2 B 195 ASP THR ARG ILE GLN LEU SER TRP LEU LEU PRO PRO GLN SEQRES 3 B 195 GLU ARG ILE ILE MET TYR GLU LEU VAL TYR TRP ALA ALA SEQRES 4 B 195 GLU ASP GLU ASP GLN GLN HIS LYS VAL THR PHE ASP PRO SEQRES 5 B 195 THR SER SER TYR THR LEU GLU ASP LEU LYS PRO ASP THR SEQRES 6 B 195 LEU TYR ARG PHE GLN LEU ALA ALA ARG SER ASP MET GLY SEQRES 7 B 195 VAL GLY VAL PHE THR PRO THR ILE GLU ALA ARG THR ALA SEQRES 8 B 195 GLN SER THR PRO SER ALA PRO PRO GLN LYS VAL MET CYS SEQRES 9 B 195 VAL SER MET GLY SER THR THR VAL ARG VAL SER TRP VAL SEQRES 10 B 195 PRO PRO PRO ALA ASP SER ARG ASN GLY VAL ILE THR GLN SEQRES 11 B 195 TYR SER VAL ALA TYR GLU ALA VAL ASP GLY GLU ASP ARG SEQRES 12 B 195 GLY ARG HIS VAL VAL ASP GLY ILE SER ARG GLU HIS SER SEQRES 13 B 195 SER TRP ASP LEU VAL GLY LEU GLU LYS TRP THR GLU TYR SEQRES 14 B 195 ARG VAL TRP VAL ARG ALA HIS THR ASP VAL GLY PRO GLY SEQRES 15 B 195 PRO GLU SER SER PRO VAL LEU VAL ARG THR ASP GLU ASP HET CL A 801 1 HET CL B 801 1 HET CL B 802 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 3(CL 1-) FORMUL 6 HOH *467(H2 O) HELIX 1 AA1 GLU A 551 GLU A 553 5 3 HELIX 2 AA2 PRO A 631 ARG A 635 5 5 HELIX 3 AA3 GLU B 551 GLU B 553 5 3 HELIX 4 AA4 PRO B 631 ARG B 635 5 5 SHEET 1 AA1 3 GLN A 519 VAL A 522 0 SHEET 2 AA1 3 ILE A 528 SER A 531 -1 O GLN A 529 N GLU A 521 SHEET 3 AA1 3 SER A 566 LEU A 569 -1 O TYR A 567 N LEU A 530 SHEET 1 AA2 4 GLN A 556 PHE A 561 0 SHEET 2 AA2 4 ILE A 540 ALA A 549 -1 N LEU A 545 O VAL A 559 SHEET 3 AA2 4 LEU A 577 SER A 586 -1 O ARG A 585 N MET A 542 SHEET 4 AA2 4 GLY A 589 VAL A 590 -1 O GLY A 589 N SER A 586 SHEET 1 AA3 4 GLN A 556 PHE A 561 0 SHEET 2 AA3 4 ILE A 540 ALA A 549 -1 N LEU A 545 O VAL A 559 SHEET 3 AA3 4 LEU A 577 SER A 586 -1 O ARG A 585 N MET A 542 SHEET 4 AA3 4 ILE A 597 ARG A 600 -1 O ALA A 599 N TYR A 578 SHEET 1 AA4 3 GLN A 611 SER A 617 0 SHEET 2 AA4 3 VAL A 623 VAL A 628 -1 O ARG A 624 N VAL A 616 SHEET 3 AA4 3 SER A 668 LEU A 671 -1 O TRP A 669 N VAL A 625 SHEET 1 AA5 4 ARG A 656 SER A 663 0 SHEET 2 AA5 4 GLN A 641 ALA A 648 -1 N VAL A 644 O VAL A 659 SHEET 3 AA5 4 GLU A 679 THR A 688 -1 O ARG A 681 N GLU A 647 SHEET 4 AA5 4 GLY A 691 GLU A 695 -1 O GLY A 693 N ALA A 686 SHEET 1 AA6 4 ARG A 656 SER A 663 0 SHEET 2 AA6 4 GLN A 641 ALA A 648 -1 N VAL A 644 O VAL A 659 SHEET 3 AA6 4 GLU A 679 THR A 688 -1 O ARG A 681 N GLU A 647 SHEET 4 AA6 4 VAL A 699 ARG A 702 -1 O VAL A 701 N TYR A 680 SHEET 1 AA7 3 GLN B 519 VAL B 522 0 SHEET 2 AA7 3 ILE B 528 SER B 531 -1 O GLN B 529 N GLU B 521 SHEET 3 AA7 3 SER B 566 LEU B 569 -1 O TYR B 567 N LEU B 530 SHEET 1 AA8 4 HIS B 557 PHE B 561 0 SHEET 2 AA8 4 ILE B 540 ALA B 549 -1 N TYR B 543 O PHE B 561 SHEET 3 AA8 4 LEU B 577 SER B 586 -1 O ARG B 585 N ILE B 541 SHEET 4 AA8 4 GLY B 591 PHE B 593 -1 O VAL B 592 N ALA B 584 SHEET 1 AA9 4 HIS B 557 PHE B 561 0 SHEET 2 AA9 4 ILE B 540 ALA B 549 -1 N TYR B 543 O PHE B 561 SHEET 3 AA9 4 LEU B 577 SER B 586 -1 O ARG B 585 N ILE B 541 SHEET 4 AA9 4 ILE B 597 ARG B 600 -1 O ALA B 599 N TYR B 578 SHEET 1 AB1 3 GLN B 611 SER B 617 0 SHEET 2 AB1 3 THR B 622 VAL B 628 -1 O ARG B 624 N VAL B 616 SHEET 3 AB1 3 SER B 668 VAL B 672 -1 O TRP B 669 N VAL B 625 SHEET 1 AB2 4 ARG B 656 SER B 663 0 SHEET 2 AB2 4 ILE B 639 ALA B 648 -1 N VAL B 644 O VAL B 659 SHEET 3 AB2 4 GLU B 679 THR B 688 -1 O TRP B 683 N ALA B 645 SHEET 4 AB2 4 GLY B 691 GLU B 695 -1 O GLY B 693 N ALA B 686 SHEET 1 AB3 4 ARG B 656 SER B 663 0 SHEET 2 AB3 4 ILE B 639 ALA B 648 -1 N VAL B 644 O VAL B 659 SHEET 3 AB3 4 GLU B 679 THR B 688 -1 O TRP B 683 N ALA B 645 SHEET 4 AB3 4 VAL B 699 ARG B 702 -1 O VAL B 701 N TYR B 680 SITE 1 AC1 4 ARG A 656 VAL A 658 ARG A 685 HOH A1002 SITE 1 AC2 3 ARG B 656 ARG B 685 HOH B 978 SITE 1 AC3 3 TRP B 548 THR B 596 HOH B1092 CRYST1 85.290 105.100 62.000 90.00 135.56 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011725 0.000000 0.011957 0.00000 SCALE2 0.000000 0.009515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023037 0.00000