HEADER RNA BINDING PROTEIN 16-DEC-19 6TQB TITLE X-RAY STRUCTURE OF ROQUIN ROQ DOMAIN IN COMPLEX WITH A UCP3 CDE1 SL TITLE 2 RNA MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROQUIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ROQUIN,PROTEIN SANROQUE,RING FINGER AND C3H ZINC FINGER COMPND 5 PROTEIN 1,RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(P*GP*GP*AP*AP*AP*UP*UP*AP*UP*AP*UP*UP*AP*AP*UP*UP*UP*CP*C)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RC3H1, GM551, KIAA2025; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090 KEYWDS ROQUIN, ROQ DOMAIN, RNA BINDING, UCP1, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.BINAS,J.-N.TANTS,S.A.PETER,R.JANOWSKI,E.DAVYDOVA,J.BRAUN, AUTHOR 2 D.NIESSING,H.SCHWALBE,J.E.WEIGAND,A.SCHLUNDT REVDAT 4 24-JAN-24 6TQB 1 REMARK REVDAT 3 29-JUL-20 6TQB 1 JRNL LINK REVDAT 2 17-JUN-20 6TQB 1 JRNL REVDAT 1 27-MAY-20 6TQB 0 JRNL AUTH O.BINAS,J.N.TANTS,S.A.PETER,R.JANOWSKI,E.DAVYDOVA,J.BRAUN, JRNL AUTH 2 D.NIESSING,H.SCHWALBE,J.E.WEIGAND,A.SCHLUNDT JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF TRANSIENTLY JRNL TITL 2 STRUCTURED AU-RICH ELEMENTS BY ROQUIN. JRNL REF NUCLEIC ACIDS RES. V. 48 7385 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32491174 JRNL DOI 10.1093/NAR/GKAA465 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 34595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1959 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1224 REMARK 3 NUCLEIC ACID ATOMS : 400 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.482 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2033 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1584 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2887 ; 1.836 ; 1.516 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3727 ; 1.597 ; 1.826 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 182 ; 5.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;27.524 ;21.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 260 ;11.965 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.292 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1872 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 426 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6TQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36355 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QI2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M BIS TRIS PROPANE PH 6.5, 0.29 M REMARK 280 SODIUM TARTRATE, 19 % PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.49500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.49500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.49500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.49500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.49500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.49500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.49500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.49500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.49500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 858 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 147 REMARK 465 GLU A 148 REMARK 465 GLU A 149 REMARK 465 GLY A 150 REMARK 465 ARG A 151 REMARK 465 ILE A 152 REMARK 465 ARG A 153 REMARK 465 ALA A 154 REMARK 465 MET A 155 REMARK 465 ARG A 156 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 465 ARG A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 GLY A 162 REMARK 465 GLU A 163 REMARK 465 ARG A 164 REMARK 465 THR A 165 REMARK 465 VAL A 166 REMARK 465 THR A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 169 REMARK 465 ILE A 170 REMARK 465 LEU A 171 REMARK 465 GLN A 172 REMARK 465 THR A 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 261 O HOH A 703 1.92 REMARK 500 OP1 A B 7 O HOH B 208 2.13 REMARK 500 O HOH A 810 O HOH A 833 2.17 REMARK 500 OD1 ASP A 261 O HOH A 705 2.17 REMARK 500 OE2 GLU A 202 O HOH A 706 2.18 REMARK 500 O4 U B 13 O HOH B 209 2.18 REMARK 500 OP1 A B 6 O HOH B 210 2.19 REMARK 500 O HOH A 816 O HOH A 819 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 282 CD GLU A 282 OE1 -0.072 REMARK 500 A B 7 O3' U B 8 P 0.083 REMARK 500 A B 7 O3' U B 8 P -0.078 REMARK 500 A B 15 O3' A B 16 P -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 281 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 281 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 U B 19 O5' - P - OP2 ANGL. DEV. = -8.0 DEGREES REMARK 500 C B 20 O5' - P - OP1 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 250 O REMARK 620 2 HOH B 209 O 101.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 822 O REMARK 620 2 HOH B 257 O 121.8 REMARK 620 3 HOH B 258 O 133.6 79.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 105 DBREF 6TQB A 147 326 UNP Q4VGL6 RC3H1_MOUSE 147 326 DBREF 6TQB B 3 21 PDB 6TQB 6TQB 3 21 SEQRES 1 A 180 GLU GLU GLU GLY ARG ILE ARG ALA MET ARG ALA ALA ARG SEQRES 2 A 180 SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU GLN SEQRES 3 A 180 HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP ALA SEQRES 4 A 180 ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO ALA SEQRES 5 A 180 MET GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA LEU SEQRES 6 A 180 GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL LEU SEQRES 7 A 180 PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN ALA SEQRES 8 A 180 SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU TYR SEQRES 9 A 180 ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU ASP SEQRES 10 A 180 SER SER LEU MET GLN LEU LYS GLU GLU PHE ARG THR TYR SEQRES 11 A 180 GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL GLN SEQRES 12 A 180 ILE ALA MET GLU ALA GLY LEU ARG ILE ALA PRO ASP GLN SEQRES 13 A 180 TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SER SEQRES 14 A 180 HIS MET GLN SER ILE ILE ASP LYS LEU GLN THR SEQRES 1 B 19 G G A A A U U A U A U U A SEQRES 2 B 19 A U U U C C HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET NA A 605 1 HET CL A 606 2 HET EDO B 101 4 HET EDO B 102 4 HET MG B 103 1 HET NA B 104 1 HET CL B 105 2 HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 7 NA 2(NA 1+) FORMUL 8 CL 2(CL 1-) FORMUL 11 MG MG 2+ FORMUL 14 HOH *241(H2 O) HELIX 1 AA1 ASN A 175 ARG A 190 1 16 HELIX 2 AA2 GLY A 196 GLU A 212 1 17 HELIX 3 AA3 SER A 218 GLU A 231 1 14 HELIX 4 AA4 SER A 238 ALA A 252 1 15 HELIX 5 AA5 GLU A 271 ARG A 274 5 4 HELIX 6 AA6 THR A 275 ALA A 294 1 20 HELIX 7 AA7 ALA A 299 GLY A 309 1 11 HELIX 8 AA8 HIS A 313 GLN A 325 1 13 SHEET 1 AA1 2 PHE A 255 ARG A 260 0 SHEET 2 AA1 2 ASP A 263 LEU A 269 -1 O LEU A 266 N THR A 258 LINK O TYR A 250 NA NA A 605 1555 1555 2.90 LINK NA NA A 605 O HOH B 209 1555 1555 2.08 LINK O HOH A 822 NA NA B 104 1555 1555 2.03 LINK O2 U B 17 MG MG B 103 1555 1555 2.91 LINK NA NA B 104 O HOH B 257 1555 1555 3.01 LINK NA NA B 104 O HOH B 258 1555 1555 3.04 SITE 1 AC1 3 LEU A 296 ILE A 298 TRP A 303 SITE 1 AC2 7 PRO A 300 HOH A 713 HOH A 741 HOH A 793 SITE 2 AC2 7 U B 9 A B 10 HOH B 217 SITE 1 AC3 5 LEU A 195 GLY A 196 ALA A 198 MET A 199 SITE 2 AC3 5 ASP A 261 SITE 1 AC4 6 ARG A 260 ASP A 261 GLU A 262 HOH A 785 SITE 2 AC4 6 HOH A 803 U B 11 SITE 1 AC5 6 TYR A 250 SER A 253 CYS A 254 PHE A 255 SITE 2 AC5 6 U B 13 HOH B 209 SITE 1 AC6 2 U B 9 HOH B 224 SITE 1 AC7 6 GLN A 318 ASP A 322 HOH A 734 U B 8 SITE 2 AC7 6 U B 9 HOH B 217 SITE 1 AC8 5 A B 12 U B 14 A B 15 HOH B 220 SITE 2 AC8 5 HOH B 245 SITE 1 AC9 5 ASP A 322 A B 7 U B 8 U B 17 SITE 2 AC9 5 U B 18 SITE 1 AD1 5 HOH A 822 U B 14 A B 15 HOH B 257 SITE 2 AD1 5 HOH B 258 SITE 1 AD2 6 THR A 240 HIS A 244 A B 6 A B 7 SITE 2 AD2 6 HOH B 221 HOH B 235 CRYST1 86.990 86.990 72.990 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013701 0.00000