HEADER STRUCTURAL PROTEIN 16-DEC-19 6TQL TITLE CRYO-EM OF ELASTASE-TREATED HUMAN UROMODULIN (UMOD)/TAMM-HORSFALL TITLE 2 PROTEIN (THP) FILAMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROMODULIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TAMM-HORSFALL URINARY GLYCOPROTEIN,THP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS ZP MODULE, ZP DOMAIN, ZP-N DOMAIN, ZP-C DOMAIN, INTERDOMAIN LINKER, KEYWDS 2 EGF DOMAIN, EXTRACELLULAR MATRIX, GLYCOPROTEIN, N-GLYCAN, STRUCTURAL KEYWDS 3 PROTEIN, PROTEIN FILAMENT, PROTEIN POLYMERIZATION EXPDTA ELECTRON MICROSCOPY AUTHOR A.STSIAPANAVA,C.XU,M.CARRONI,B.WU,L.JOVINE REVDAT 4 03-MAR-21 6TQL 1 JRNL REVDAT 3 16-DEC-20 6TQL 1 REMARK REVDAT 2 25-NOV-20 6TQL 1 JRNL REVDAT 1 04-NOV-20 6TQL 0 JRNL AUTH A.STSIAPANAVA,C.XU,M.BRUNATI,S.ZAMORA-CABALLERO,C.SCHAEFFER, JRNL AUTH 2 M.BOKHOVE,L.HAN,H.HEBERT,M.CARRONI,S.YASUMASU,L.RAMPOLDI, JRNL AUTH 3 B.WU,L.JOVINE JRNL TITL CRYO-EM STRUCTURE OF NATIVE HUMAN UROMODULIN, A ZONA JRNL TITL 2 PELLUCIDA MODULE POLYMER. JRNL REF EMBO J. V. 39 06807 2020 JRNL REFN ESSN 1460-2075 JRNL PMID 33196145 JRNL DOI 10.15252/EMBJ.2020106807 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.TAMM,F.L.HORSFALL REMARK 1 TITL CHARACTERIZATION AND SEPARATION OF AN INHIBITOR OF VIRAL REMARK 1 TITL 2 HEMAGGLUTINATION PRESENT IN URINE. REMARK 1 REF PROC. SOC. EXP. BIOL. MED. V. 74 106 1950 REMARK 1 REFN ISSN 0037-9727 REMARK 1 PMID 15430405 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.DELAIN,J.P.THIERY,D.COULARD,A.JOLIVIENE,L.HARTMAN REMARK 1 TITL ETUDE CHIMIQUE ET ULTRASTRUCTURALE DE LA GLYCOPROTEINE DE REMARK 1 TITL 2 TAMM ET HORSFALL OU UROMUCOIDE. REMARK 1 REF BIOL. CELLULAIRE V. 39 31 1980 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.PENNICA,W.J.KOHR,W.J.KUANG,D.GLAISTER,B.B.AGGARWAL, REMARK 1 AUTH 2 E.Y.CHEN,D.V.GOEDDEL REMARK 1 TITL IDENTIFICATION OF HUMAN UROMODULIN AS THE TAMM-HORSFALL REMARK 1 TITL 2 URINARY GLYCOPROTEIN. REMARK 1 REF SCIENCE V. 236 83 1987 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 3453112 REMARK 1 DOI 10.1126/SCIENCE.3453112 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.JOVINE,H.QI,Z.WILLIAMS,E.LITSCHER REMARK 1 TITL THE ZP DOMAIN IS A CONSERVED MODULE FOR POLYMERIZATION OF REMARK 1 TITL 2 EXTRACELLULAR PROTEINS. REMARK 1 REF NAT. CELL BIOL. V. 4 457 2002 REMARK 1 REFN ISSN 1465-7392 REMARK 1 PMID 12021773 REMARK 1 DOI 10.1038/NCB802 REMARK 1 REFERENCE 5 REMARK 1 AUTH P.M.WASSARMAN,F.SERAFINI-CESSI,N.MALAGOLINI,D.CAVALLONE REMARK 1 TITL TAMM-HORSFALL GLYCOPROTEIN: BIOLOGY AND CLINICAL RELEVANCE. REMARK 1 REF AM. J. KIDNEY DIS. V. 42 658 2003 REMARK 1 REFN ISSN 1523-6838 REMARK 1 PMID 14520616 REMARK 1 DOI 10.1016/S0272-6386(03)00829-1 REMARK 1 REFERENCE 6 REMARK 1 AUTH L.JOVINE,H.QI,Z.WILLIAMS,E.S.LITSCHER,P.M.WASSARMAN REMARK 1 TITL A DUPLICATED MOTIF CONTROLS ASSEMBLY OF ZONA PELLUCIDA REMARK 1 TITL 2 DOMAIN PROTEINS. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 101 5922 2004 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 15079052 REMARK 1 DOI 10.1073/PNAS.0401600101 REMARK 1 REFERENCE 7 REMARK 1 AUTH L.JOVINE,C.C.DARIE,E.S.LITSCHER,P.M.WASSARMAN REMARK 1 TITL ZONA PELLUCIDA DOMAIN PROTEINS. REMARK 1 REF ANNU. REV. BIOCHEM. V. 74 83 2005 REMARK 1 REFN ISSN 0066-4154 REMARK 1 PMID 15952882 REMARK 1 DOI 10.1146/ANNUREV.BIOCHEM.74.082803.133039 REMARK 1 REFERENCE 8 REMARK 1 AUTH C.SCHAEFFER,S.SANTAMBROGIO,S.PERUCCA,G.CASARI,L.RAMPOLDI REMARK 1 TITL ANALYSIS OF UROMODULIN POLYMERIZATION PROVIDES NEW INSIGHTS REMARK 1 TITL 2 INTO THE MECHANISMS REGULATING ZP DOMAIN-MEDIATED PROTEIN REMARK 1 TITL 3 ASSEMBLY. REMARK 1 REF MOL. BIOL. CELL V. 20 589 2009 REMARK 1 REFN ESSN 1939-4586 REMARK 1 PMID 19005207 REMARK 1 DOI 10.1091/MBC.E08-08-0876 REMARK 1 REFERENCE 9 REMARK 1 AUTH L.HAN,M.MONNE,H.OKUMURA,T.SCHWEND,A.L.CHERRY,D.FLOT, REMARK 1 AUTH 2 T.MATSUDA,L.JOVINE REMARK 1 TITL INSIGHTS INTO EGG COAT ASSEMBLY AND EGG-SPERM INTERACTION REMARK 1 TITL 2 FROM THE X-RAY STRUCTURE OF FULL-LENGTH ZP3. REMARK 1 REF CELL V. 143 404 2010 REMARK 1 REFN ISSN 1097-4172 REMARK 1 PMID 20970175 REMARK 1 DOI 10.1016/J.CELL.2010.09.041 REMARK 1 REFERENCE 10 REMARK 1 AUTH L.RAMPOLDI,F.SCOLARI,A.AMOROSO,G.GHIGGERI,O.DEVUYST REMARK 1 TITL THE REDISCOVERY OF UROMODULIN (TAMM-HORSFALL PROTEIN): FROM REMARK 1 TITL 2 TUBULOINTERSTITIAL NEPHROPATHY TO CHRONIC KIDNEY DISEASE. REMARK 1 REF KIDNEY INT. V. 80 338 2011 REMARK 1 REFN ISSN 1523-1755 REMARK 1 PMID 21654721 REMARK 1 DOI 10.1038/KI.2011.134 REMARK 1 REFERENCE 11 REMARK 1 AUTH M.BRUNATI,S.PERUCCA,L.HAN,A.CATTANEO,F.CONSOLATO,A.ANDOLFO, REMARK 1 AUTH 2 C.SCHAEFFER,E.OLINGER,J.PENG,S.SANTAMBROGIO,R.PERRIER,S.LI, REMARK 1 AUTH 3 M.BOKHOVE,A.BACHI,E.HUMMLER,O.DEVUYST,Q.WU,L.JOVINE, REMARK 1 AUTH 4 L.RAMPOLDI REMARK 1 TITL THE SERINE PROTEASE HEPSIN MEDIATES URINARY SECRETION AND REMARK 1 TITL 2 POLYMERISATION OF ZONA PELLUCIDA DOMAIN PROTEIN UROMODULIN. REMARK 1 REF ELIFE V. 4 08887 2015 REMARK 1 REFN ESSN 2050-084X REMARK 1 PMID 26673890 REMARK 1 DOI 10.7554/ELIFE.08887 REMARK 1 REFERENCE 12 REMARK 1 AUTH M.BOKHOVE,K.NISHIMURA,M.BRUNATI,L.HAN,D.DE SANCTIS, REMARK 1 AUTH 2 L.RAMPOLDI,L.JOVINE REMARK 1 TITL A STRUCTURED INTERDOMAIN LINKER DIRECTS SELF-POLYMERIZATION REMARK 1 TITL 2 OF HUMAN UROMODULIN. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 113 1552 2016 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 26811476 REMARK 1 DOI 10.1073/PNAS.1519803113 REMARK 1 REFERENCE 13 REMARK 1 AUTH M.BOKHOVE,L.JOVINE REMARK 1 TITL STRUCTURE OF ZONA PELLUCIDA MODULE PROTEINS. REMARK 1 REF CURR. TOP. DEV. BIOL. V. 130 413 2018 REMARK 1 REFN ISSN 1557-8933 REMARK 1 PMID 29853186 REMARK 1 DOI 10.1016/BS.CTDB.2018.02.007 REMARK 1 REFERENCE 14 REMARK 1 AUTH A.STSIAPANAVA,C.XU,M.BRUNATI,S.ZAMORA-CABALLERO,C.SCHAEFFER, REMARK 1 AUTH 2 L.HAN,M.CARRONI,S.YASUMASU,L.RAMPOLDI,B.WU,L.JOVINE REMARK 1 TITL CRYO-EM STRUCTURE OF NATIVE HUMAN UROMODULIN, A ZONA REMARK 1 TITL 2 PELLUCIDA MODULE POLYMER. REMARK 1 REF BIORXIV 2020 REMARK 1 REFN REMARK 1 DOI 10.1101/2020.05.28.119206 REMARK 2 REMARK 2 RESOLUTION. 3.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, GCTF, UCSF CHIMERA, COOT, REMARK 3 PHENIX, RELION, RELION, RELION, RELION, REMARK 3 PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6TQK REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 171.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.960 REMARK 3 NUMBER OF PARTICLES : 94937 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: PHENIX RESOLVECRYOEM FSCREF=0.5 REMARK 4 REMARK 4 6TQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105882. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : UROMODULIN (UMOD)/TAMM-HORSFALL REMARK 245 PROTEIN (THP) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : ELASTASE-RESISTANT FRAGMENT REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 5683 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 45.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 165000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 585 REMARK 465 ARG A 586 REMARK 465 PHE A 587 REMARK 465 SER B 292 REMARK 465 VAL B 293 REMARK 465 GLU B 294 REMARK 465 GLY B 295 REMARK 465 THR B 296 REMARK 465 CYS B 297 REMARK 465 GLU B 298 REMARK 465 GLU B 299 REMARK 465 CYS B 300 REMARK 465 SER B 301 REMARK 465 ILE B 302 REMARK 465 ASP B 303 REMARK 465 GLU B 304 REMARK 465 ASP B 305 REMARK 465 CYS B 306 REMARK 465 LYS B 307 REMARK 465 SER B 308 REMARK 465 ASN B 309 REMARK 465 ASN B 310 REMARK 465 GLY B 311 REMARK 465 ARG B 312 REMARK 465 TRP B 313 REMARK 465 HIS B 314 REMARK 465 CYS B 315 REMARK 465 GLN B 316 REMARK 465 CYS B 317 REMARK 465 LYS B 318 REMARK 465 GLN B 319 REMARK 465 ASP B 320 REMARK 465 PHE B 321 REMARK 465 ASN B 322 REMARK 465 ILE B 323 REMARK 465 THR B 324 REMARK 465 ASP B 325 REMARK 465 ILE B 326 REMARK 465 SER B 327 REMARK 465 LEU B 328 REMARK 465 LEU B 329 REMARK 465 GLU B 330 REMARK 465 HIS B 331 REMARK 465 ARG B 332 REMARK 465 LEU B 333 REMARK 465 GLU B 334 REMARK 465 CYS B 335 REMARK 465 GLY B 336 REMARK 465 ALA B 337 REMARK 465 ASN B 338 REMARK 465 ASP B 339 REMARK 465 MET B 340 REMARK 465 LYS B 341 REMARK 465 VAL B 342 REMARK 465 SER B 343 REMARK 465 LEU B 344 REMARK 465 GLY B 345 REMARK 465 LYS B 346 REMARK 465 CYS B 347 REMARK 465 GLN B 348 REMARK 465 LEU B 349 REMARK 465 LYS B 350 REMARK 465 SER B 351 REMARK 465 LEU B 352 REMARK 465 GLY B 353 REMARK 465 PHE B 354 REMARK 465 ASP B 355 REMARK 465 LYS B 356 REMARK 465 VAL B 357 REMARK 465 PHE B 358 REMARK 465 MET B 359 REMARK 465 TYR B 360 REMARK 465 LEU B 361 REMARK 465 SER B 362 REMARK 465 ASP B 363 REMARK 465 SER B 364 REMARK 465 ARG B 365 REMARK 465 CYS B 366 REMARK 465 SER B 367 REMARK 465 GLY B 368 REMARK 465 PHE B 369 REMARK 465 ASN B 370 REMARK 465 ASP B 371 REMARK 465 ARG B 372 REMARK 465 ASP B 373 REMARK 465 ASN B 374 REMARK 465 ARG B 375 REMARK 465 ASP B 376 REMARK 465 TRP B 377 REMARK 465 VAL B 378 REMARK 465 SER B 379 REMARK 465 VAL B 380 REMARK 465 VAL B 381 REMARK 465 THR B 382 REMARK 465 PRO B 383 REMARK 465 ALA B 384 REMARK 465 ARG B 385 REMARK 465 ASP B 386 REMARK 465 GLY B 387 REMARK 465 PRO B 388 REMARK 465 CYS B 389 REMARK 465 GLY B 390 REMARK 465 THR B 391 REMARK 465 VAL B 392 REMARK 465 LEU B 393 REMARK 465 THR B 394 REMARK 465 ARG B 395 REMARK 465 ASN B 396 REMARK 465 GLU B 397 REMARK 465 THR B 398 REMARK 465 HIS B 399 REMARK 465 ALA B 400 REMARK 465 THR B 401 REMARK 465 TYR B 402 REMARK 465 SER B 403 REMARK 465 ASN B 404 REMARK 465 THR B 405 REMARK 465 LEU B 406 REMARK 465 TYR B 407 REMARK 465 LEU B 408 REMARK 465 ALA B 409 REMARK 465 ASP B 410 REMARK 465 GLU B 411 REMARK 465 ILE B 412 REMARK 465 ILE B 413 REMARK 465 ILE B 414 REMARK 465 ARG B 415 REMARK 465 ASP B 416 REMARK 465 LEU B 417 REMARK 465 ASN B 418 REMARK 465 ILE B 419 REMARK 465 LYS B 420 REMARK 465 ILE B 421 REMARK 465 ASN B 422 REMARK 465 PHE B 423 REMARK 465 ALA B 424 REMARK 465 CYS B 425 REMARK 465 SER B 426 REMARK 465 TYR B 427 REMARK 465 PRO B 428 REMARK 465 LEU B 429 REMARK 465 ASP B 430 REMARK 465 MET B 431 REMARK 465 LYS B 432 REMARK 465 VAL B 433 REMARK 465 SER B 434 REMARK 465 LEU B 435 REMARK 465 LYS B 436 REMARK 465 THR B 437 REMARK 465 ALA B 438 REMARK 465 LEU B 439 REMARK 465 GLN B 440 REMARK 465 PRO B 441 REMARK 465 MET B 442 REMARK 465 VAL B 443 REMARK 465 THR B 585 REMARK 465 ARG B 586 REMARK 465 PHE B 587 REMARK 465 ALA C 445 REMARK 465 LEU C 446 REMARK 465 ASN C 447 REMARK 465 ILE C 448 REMARK 465 ARG C 449 REMARK 465 VAL C 450 REMARK 465 GLY C 451 REMARK 465 GLY C 452 REMARK 465 THR C 453 REMARK 465 GLY C 454 REMARK 465 MET C 455 REMARK 465 PHE C 456 REMARK 465 THR C 457 REMARK 465 VAL C 458 REMARK 465 ARG C 459 REMARK 465 MET C 460 REMARK 465 ALA C 461 REMARK 465 LEU C 462 REMARK 465 PHE C 463 REMARK 465 GLN C 464 REMARK 465 THR C 465 REMARK 465 PRO C 466 REMARK 465 SER C 467 REMARK 465 TYR C 468 REMARK 465 THR C 469 REMARK 465 GLN C 470 REMARK 465 PRO C 471 REMARK 465 TYR C 472 REMARK 465 GLN C 473 REMARK 465 GLY C 474 REMARK 465 SER C 475 REMARK 465 SER C 476 REMARK 465 VAL C 477 REMARK 465 THR C 478 REMARK 465 LEU C 479 REMARK 465 SER C 480 REMARK 465 THR C 481 REMARK 465 GLU C 482 REMARK 465 ALA C 483 REMARK 465 PHE C 484 REMARK 465 LEU C 485 REMARK 465 TYR C 486 REMARK 465 VAL C 487 REMARK 465 GLY C 488 REMARK 465 THR C 489 REMARK 465 MET C 490 REMARK 465 LEU C 491 REMARK 465 ASP C 492 REMARK 465 GLY C 493 REMARK 465 GLY C 494 REMARK 465 ASP C 495 REMARK 465 LEU C 496 REMARK 465 SER C 497 REMARK 465 ARG C 498 REMARK 465 PHE C 499 REMARK 465 ALA C 500 REMARK 465 LEU C 501 REMARK 465 LEU C 502 REMARK 465 MET C 503 REMARK 465 THR C 504 REMARK 465 ASN C 505 REMARK 465 CYS C 506 REMARK 465 TYR C 507 REMARK 465 ALA C 508 REMARK 465 THR C 509 REMARK 465 PRO C 510 REMARK 465 SER C 511 REMARK 465 SER C 512 REMARK 465 ASN C 513 REMARK 465 ALA C 514 REMARK 465 THR C 515 REMARK 465 ASP C 516 REMARK 465 PRO C 517 REMARK 465 LEU C 518 REMARK 465 LYS C 519 REMARK 465 TYR C 520 REMARK 465 PHE C 521 REMARK 465 ILE C 522 REMARK 465 ILE C 523 REMARK 465 GLN C 524 REMARK 465 ASP C 525 REMARK 465 ARG C 526 REMARK 465 CYS C 527 REMARK 465 PRO C 528 REMARK 465 HIS C 529 REMARK 465 THR C 530 REMARK 465 ARG C 531 REMARK 465 ASP C 532 REMARK 465 SER C 533 REMARK 465 THR C 534 REMARK 465 ILE C 535 REMARK 465 GLN C 536 REMARK 465 VAL C 537 REMARK 465 VAL C 538 REMARK 465 GLU C 539 REMARK 465 ASN C 540 REMARK 465 GLY C 541 REMARK 465 GLU C 542 REMARK 465 SER C 543 REMARK 465 SER C 544 REMARK 465 GLN C 545 REMARK 465 GLY C 546 REMARK 465 ARG C 547 REMARK 465 PHE C 548 REMARK 465 SER C 549 REMARK 465 VAL C 550 REMARK 465 GLN C 551 REMARK 465 MET C 552 REMARK 465 PHE C 553 REMARK 465 ARG C 554 REMARK 465 PHE C 555 REMARK 465 ALA C 556 REMARK 465 GLY C 557 REMARK 465 ASN C 558 REMARK 465 TYR C 559 REMARK 465 ASP C 560 REMARK 465 LEU C 561 REMARK 465 VAL C 562 REMARK 465 TYR C 563 REMARK 465 LEU C 564 REMARK 465 HIS C 565 REMARK 465 CYS C 566 REMARK 465 GLU C 567 REMARK 465 VAL C 568 REMARK 465 TYR C 569 REMARK 465 LEU C 570 REMARK 465 CYS C 571 REMARK 465 ASP C 572 REMARK 465 THR C 573 REMARK 465 MET C 574 REMARK 465 ASN C 575 REMARK 465 GLU C 576 REMARK 465 LYS C 577 REMARK 465 CYS C 578 REMARK 465 LYS C 579 REMARK 465 PRO C 580 REMARK 465 THR C 581 REMARK 465 CYS C 582 REMARK 465 SER C 583 REMARK 465 GLY C 584 REMARK 465 THR C 585 REMARK 465 ARG C 586 REMARK 465 PHE C 587 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 318 -169.38 -124.25 REMARK 500 ARG A 372 -2.52 71.67 REMARK 500 ASN A 540 116.12 -161.18 REMARK 500 ASN B 540 116.03 -161.24 REMARK 500 LYS C 318 -169.37 -124.25 REMARK 500 ARG C 372 -2.55 71.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10554 RELATED DB: EMDB REMARK 900 CRYO-EM OF ELASTASE-TREATED NATIVE FILAMENTS OF HUMAN UROMODULIN REMARK 900 (UMOD)/TAMM-HORSFALL PROTEIN (THP). REMARK 900 RELATED ID: EMD-10553 RELATED DB: EMDB REMARK 900 CRYO-EM OF NATIVE HUMAN UROMODULIN (UMOD)/TAMM-HORSFALL PROTEIN REMARK 900 (THP) FILAMENT. REMARK 900 RELATED ID: 6TQK RELATED DB: PDB REMARK 900 CRYO-EM OF NATIVE HUMAN UROMODULIN (UMOD)/TAMM-HORSFALL PROTEIN REMARK 900 (THP) FILAMENT. REMARK 900 RELATED ID: 4WRN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PRONASE-RESISTANT FRAGMENT OF HUMAN REMARK 900 UROMODULIN IN PRECURSOR FORM AT 3.2 A RESOLUTION. REMARK 900 RELATED ID: 3NK4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH SPERM RECEPTOR ZP3 AT 2.0 A REMARK 900 RESOLUTION. DBREF 6TQL A 292 587 UNP P07911 UROM_HUMAN 292 587 DBREF 6TQL B 292 587 UNP P07911 UROM_HUMAN 292 587 DBREF 6TQL C 292 587 UNP P07911 UROM_HUMAN 292 587 SEQRES 1 A 296 SER VAL GLU GLY THR CYS GLU GLU CYS SER ILE ASP GLU SEQRES 2 A 296 ASP CYS LYS SER ASN ASN GLY ARG TRP HIS CYS GLN CYS SEQRES 3 A 296 LYS GLN ASP PHE ASN ILE THR ASP ILE SER LEU LEU GLU SEQRES 4 A 296 HIS ARG LEU GLU CYS GLY ALA ASN ASP MET LYS VAL SER SEQRES 5 A 296 LEU GLY LYS CYS GLN LEU LYS SER LEU GLY PHE ASP LYS SEQRES 6 A 296 VAL PHE MET TYR LEU SER ASP SER ARG CYS SER GLY PHE SEQRES 7 A 296 ASN ASP ARG ASP ASN ARG ASP TRP VAL SER VAL VAL THR SEQRES 8 A 296 PRO ALA ARG ASP GLY PRO CYS GLY THR VAL LEU THR ARG SEQRES 9 A 296 ASN GLU THR HIS ALA THR TYR SER ASN THR LEU TYR LEU SEQRES 10 A 296 ALA ASP GLU ILE ILE ILE ARG ASP LEU ASN ILE LYS ILE SEQRES 11 A 296 ASN PHE ALA CYS SER TYR PRO LEU ASP MET LYS VAL SER SEQRES 12 A 296 LEU LYS THR ALA LEU GLN PRO MET VAL SER ALA LEU ASN SEQRES 13 A 296 ILE ARG VAL GLY GLY THR GLY MET PHE THR VAL ARG MET SEQRES 14 A 296 ALA LEU PHE GLN THR PRO SER TYR THR GLN PRO TYR GLN SEQRES 15 A 296 GLY SER SER VAL THR LEU SER THR GLU ALA PHE LEU TYR SEQRES 16 A 296 VAL GLY THR MET LEU ASP GLY GLY ASP LEU SER ARG PHE SEQRES 17 A 296 ALA LEU LEU MET THR ASN CYS TYR ALA THR PRO SER SER SEQRES 18 A 296 ASN ALA THR ASP PRO LEU LYS TYR PHE ILE ILE GLN ASP SEQRES 19 A 296 ARG CYS PRO HIS THR ARG ASP SER THR ILE GLN VAL VAL SEQRES 20 A 296 GLU ASN GLY GLU SER SER GLN GLY ARG PHE SER VAL GLN SEQRES 21 A 296 MET PHE ARG PHE ALA GLY ASN TYR ASP LEU VAL TYR LEU SEQRES 22 A 296 HIS CYS GLU VAL TYR LEU CYS ASP THR MET ASN GLU LYS SEQRES 23 A 296 CYS LYS PRO THR CYS SER GLY THR ARG PHE SEQRES 1 B 296 SER VAL GLU GLY THR CYS GLU GLU CYS SER ILE ASP GLU SEQRES 2 B 296 ASP CYS LYS SER ASN ASN GLY ARG TRP HIS CYS GLN CYS SEQRES 3 B 296 LYS GLN ASP PHE ASN ILE THR ASP ILE SER LEU LEU GLU SEQRES 4 B 296 HIS ARG LEU GLU CYS GLY ALA ASN ASP MET LYS VAL SER SEQRES 5 B 296 LEU GLY LYS CYS GLN LEU LYS SER LEU GLY PHE ASP LYS SEQRES 6 B 296 VAL PHE MET TYR LEU SER ASP SER ARG CYS SER GLY PHE SEQRES 7 B 296 ASN ASP ARG ASP ASN ARG ASP TRP VAL SER VAL VAL THR SEQRES 8 B 296 PRO ALA ARG ASP GLY PRO CYS GLY THR VAL LEU THR ARG SEQRES 9 B 296 ASN GLU THR HIS ALA THR TYR SER ASN THR LEU TYR LEU SEQRES 10 B 296 ALA ASP GLU ILE ILE ILE ARG ASP LEU ASN ILE LYS ILE SEQRES 11 B 296 ASN PHE ALA CYS SER TYR PRO LEU ASP MET LYS VAL SER SEQRES 12 B 296 LEU LYS THR ALA LEU GLN PRO MET VAL SER ALA LEU ASN SEQRES 13 B 296 ILE ARG VAL GLY GLY THR GLY MET PHE THR VAL ARG MET SEQRES 14 B 296 ALA LEU PHE GLN THR PRO SER TYR THR GLN PRO TYR GLN SEQRES 15 B 296 GLY SER SER VAL THR LEU SER THR GLU ALA PHE LEU TYR SEQRES 16 B 296 VAL GLY THR MET LEU ASP GLY GLY ASP LEU SER ARG PHE SEQRES 17 B 296 ALA LEU LEU MET THR ASN CYS TYR ALA THR PRO SER SER SEQRES 18 B 296 ASN ALA THR ASP PRO LEU LYS TYR PHE ILE ILE GLN ASP SEQRES 19 B 296 ARG CYS PRO HIS THR ARG ASP SER THR ILE GLN VAL VAL SEQRES 20 B 296 GLU ASN GLY GLU SER SER GLN GLY ARG PHE SER VAL GLN SEQRES 21 B 296 MET PHE ARG PHE ALA GLY ASN TYR ASP LEU VAL TYR LEU SEQRES 22 B 296 HIS CYS GLU VAL TYR LEU CYS ASP THR MET ASN GLU LYS SEQRES 23 B 296 CYS LYS PRO THR CYS SER GLY THR ARG PHE SEQRES 1 C 296 SER VAL GLU GLY THR CYS GLU GLU CYS SER ILE ASP GLU SEQRES 2 C 296 ASP CYS LYS SER ASN ASN GLY ARG TRP HIS CYS GLN CYS SEQRES 3 C 296 LYS GLN ASP PHE ASN ILE THR ASP ILE SER LEU LEU GLU SEQRES 4 C 296 HIS ARG LEU GLU CYS GLY ALA ASN ASP MET LYS VAL SER SEQRES 5 C 296 LEU GLY LYS CYS GLN LEU LYS SER LEU GLY PHE ASP LYS SEQRES 6 C 296 VAL PHE MET TYR LEU SER ASP SER ARG CYS SER GLY PHE SEQRES 7 C 296 ASN ASP ARG ASP ASN ARG ASP TRP VAL SER VAL VAL THR SEQRES 8 C 296 PRO ALA ARG ASP GLY PRO CYS GLY THR VAL LEU THR ARG SEQRES 9 C 296 ASN GLU THR HIS ALA THR TYR SER ASN THR LEU TYR LEU SEQRES 10 C 296 ALA ASP GLU ILE ILE ILE ARG ASP LEU ASN ILE LYS ILE SEQRES 11 C 296 ASN PHE ALA CYS SER TYR PRO LEU ASP MET LYS VAL SER SEQRES 12 C 296 LEU LYS THR ALA LEU GLN PRO MET VAL SER ALA LEU ASN SEQRES 13 C 296 ILE ARG VAL GLY GLY THR GLY MET PHE THR VAL ARG MET SEQRES 14 C 296 ALA LEU PHE GLN THR PRO SER TYR THR GLN PRO TYR GLN SEQRES 15 C 296 GLY SER SER VAL THR LEU SER THR GLU ALA PHE LEU TYR SEQRES 16 C 296 VAL GLY THR MET LEU ASP GLY GLY ASP LEU SER ARG PHE SEQRES 17 C 296 ALA LEU LEU MET THR ASN CYS TYR ALA THR PRO SER SER SEQRES 18 C 296 ASN ALA THR ASP PRO LEU LYS TYR PHE ILE ILE GLN ASP SEQRES 19 C 296 ARG CYS PRO HIS THR ARG ASP SER THR ILE GLN VAL VAL SEQRES 20 C 296 GLU ASN GLY GLU SER SER GLN GLY ARG PHE SER VAL GLN SEQRES 21 C 296 MET PHE ARG PHE ALA GLY ASN TYR ASP LEU VAL TYR LEU SEQRES 22 C 296 HIS CYS GLU VAL TYR LEU CYS ASP THR MET ASN GLU LYS SEQRES 23 C 296 CYS LYS PRO THR CYS SER GLY THR ARG PHE HET NAG D 1 26 HET NAG D 2 27 HET NAG E 1 26 HET NAG E 2 26 HET BMA E 3 19 HET MAN E 4 19 HET NAG E 5 26 HET GAL E 6 21 HET NAG E 7 27 HET MAN E 8 19 HET NAG E 9 27 HET NAG E 10 27 HET NAG F 1 26 HET NAG F 2 27 HET NAG G 1 26 HET NAG G 2 26 HET BMA G 3 19 HET MAN G 4 19 HET NAG G 5 27 HET NAG G 6 27 HET MAN G 7 20 HET NAG G 8 27 HET NAG A 601 27 HET NAG B 601 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 4 NAG 17(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 5 MAN 4(C6 H12 O6) FORMUL 5 GAL C6 H12 O6 HELIX 1 1 THR A 324 LEU A 329 1 6 HELIX 2 2 LYS A 346 LEU A 352 1 7 HELIX 3 3 THR C 324 LEU C 329 1 6 HELIX 4 4 LYS C 346 LEU C 352 1 7 HELIX 5 5 CYS A 297 GLU A 299 3 3 HELIX 6 6 CYS C 297 GLU C 299 3 3 SHEET 1 A 1 CYS A 306 ASN A 309 0 SHEET 2 A 1 ARG A 312 CYS A 315 0 SHEET 3 A 1 ARG A 332 CYS A 335 0 SHEET 4 A 1 ASP A 339 GLY A 345 0 SHEET 5 A 1 PHE A 358 LEU A 361 0 SHEET 6 A 1 PHE A 369 ASN A 370 0 SHEET 7 A 1 TRP A 377 PRO A 383 0 SHEET 8 A 1 VAL A 392 ARG A 395 0 SHEET 9 A 1 ALA A 400 ALA A 409 0 SHEET 10 A 1 ASN A 418 SER A 426 0 SHEET 11 A 1 ASP A 430 MET A 442 0 SHEET 12 A 1 ALA A 445 THR A 453 0 SHEET 13 A 1 VAL A 458 PHE A 463 0 SHEET 14 A 1 SER A 476 SER A 480 0 SHEET 15 A 1 PHE A 484 LEU A 491 0 SHEET 16 A 1 PHE A 499 THR A 509 0 SHEET 17 A 1 TYR A 520 GLN A 524 0 SHEET 18 A 1 CYS A 527 PRO A 528 0 SHEET 19 A 1 GLN A 536 GLU A 539 0 SHEET 20 A 1 GLY A 546 GLN A 551 0 SHEET 21 A 1 VAL A 562 ASP A 572 0 SHEET 22 A 1 ALA B 445 THR B 453 0 SHEET 23 A 1 VAL B 458 PHE B 463 0 SHEET 24 A 1 SER B 476 SER B 480 0 SHEET 25 A 1 PHE B 484 LEU B 491 0 SHEET 26 A 1 PHE B 499 THR B 509 0 SHEET 27 A 1 TYR B 520 GLN B 524 0 SHEET 28 A 1 CYS B 527 PRO B 528 0 SHEET 29 A 1 GLN B 536 GLU B 539 0 SHEET 30 A 1 GLY B 546 GLN B 551 0 SHEET 31 A 1 ARG B 554 PHE B 555 0 SHEET 32 A 1 VAL B 562 ASP B 572 0 SHEET 33 A 1 CYS C 306 ASN C 309 0 SHEET 34 A 1 ARG C 312 CYS C 315 0 SHEET 35 A 1 ARG C 332 CYS C 335 0 SHEET 36 A 1 ASP C 339 GLY C 345 0 SHEET 37 A 1 PHE C 358 LEU C 361 0 SHEET 38 A 1 PHE C 369 ASN C 370 0 SHEET 39 A 1 TRP C 377 PRO C 383 0 SHEET 40 A 1 VAL C 392 ARG C 395 0 SHEET 41 A 1 ALA C 400 ALA C 409 0 SHEET 42 A 1 ILE C 413 ILE C 414 0 SHEET 43 A 1 ASN C 418 SER C 426 0 SHEET 44 A 1 ASP C 430 MET C 442 0 SSBOND 1 CYS A 297 CYS A 306 1555 1555 2.03 SSBOND 2 CYS A 300 CYS A 315 1555 1555 2.03 SSBOND 3 CYS A 317 CYS A 347 1555 1555 2.03 SSBOND 4 CYS A 335 CYS A 425 1555 1555 2.03 SSBOND 5 CYS A 366 CYS A 389 1555 1555 2.02 SSBOND 6 CYS A 506 CYS A 566 1555 1555 2.03 SSBOND 7 CYS A 527 CYS A 582 1555 1555 2.03 SSBOND 8 CYS A 571 CYS A 578 1555 1555 2.03 SSBOND 9 CYS B 506 CYS B 566 1555 1555 2.03 SSBOND 10 CYS B 527 CYS B 582 1555 1555 2.03 SSBOND 11 CYS B 571 CYS B 578 1555 1555 2.03 SSBOND 12 CYS C 297 CYS C 306 1555 1555 2.03 SSBOND 13 CYS C 300 CYS C 315 1555 1555 2.03 SSBOND 14 CYS C 317 CYS C 347 1555 1555 2.03 SSBOND 15 CYS C 335 CYS C 425 1555 1555 2.03 SSBOND 16 CYS C 366 CYS C 389 1555 1555 2.02 LINK ND2 ASN A 322 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 396 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 513 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN B 513 C1 NAG B 601 1555 1555 1.44 LINK ND2 ASN C 322 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN C 396 C1 NAG G 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 LINK O6 BMA E 3 C1 MAN E 4 1555 1555 1.45 LINK O3 BMA E 3 C1 MAN E 8 1555 1555 1.44 LINK O2 MAN E 4 C1 NAG E 5 1555 1555 1.46 LINK O4 MAN E 4 C1 NAG E 7 1555 1555 1.44 LINK O4 NAG E 5 C1 GAL E 6 1555 1555 1.46 LINK O2 MAN E 8 C1 NAG E 9 1555 1555 1.46 LINK O4 MAN E 8 C1 NAG E 10 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.45 LINK O3 BMA G 3 C1 MAN G 4 1555 1555 1.44 LINK O6 BMA G 3 C1 MAN G 7 1555 1555 1.45 LINK O2 MAN G 4 C1 NAG G 5 1555 1555 1.46 LINK O4 MAN G 4 C1 NAG G 6 1555 1555 1.44 LINK O4 MAN G 7 C1 NAG G 8 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000