HEADER PHOTOSYNTHESIS 17-DEC-19 6TR1 TITLE NATIVE CYTOCHROME C6 FROM THERMOSYNECHOCOCCUS ELONGATUS IN SPACE GROUP TITLE 2 H3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME C-553,CYTOCHROME C553,SOLUBLE CYTOCHROME F; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CYTOCHROME C6; COMPND 7 CHAIN: C; COMPND 8 SYNONYM: CYTOCHROME C-553,CYTOCHROME C553,SOLUBLE CYTOCHROME F; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CYTOCHROME C6; COMPND 11 CHAIN: E; COMPND 12 SYNONYM: CYTOCHROME C-553,CYTOCHROME C553,SOLUBLE CYTOCHROME F; COMPND 13 OTHER_DETAILS: CYTOCHROME C6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 6 ORGANISM_TAXID: 197221; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 9 ORGANISM_TAXID: 197221 KEYWDS PHOTOSYSTEM I, HEME, CYANOBACTERIA, ELECTRON TRANSPORT, KEYWDS 2 PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.FALKE,C.G.FEILER,I.SARROU REVDAT 4 24-JAN-24 6TR1 1 REMARK REVDAT 3 16-SEP-20 6TR1 1 JRNL REVDAT 2 09-SEP-20 6TR1 1 JRNL LINK REVDAT 1 25-DEC-19 6TR1 0 JRNL AUTH S.FALKE,C.FEILER,H.CHAPMAN,I.SARROU JRNL TITL CRYSTAL STRUCTURES OF NATIVE CYTOCHROME C6FROM JRNL TITL 2 THERMOSYNECHOCOCCUS ELONGATUS IN TWO DIFFERENT SPACE GROUPS JRNL TITL 3 AND IMPLICATIONS FOR ITS OLIGOMERIZATION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 76 444 2020 JRNL REFN ESSN 2053-230X JRNL PMID 32880593 JRNL DOI 10.1107/S2053230X20010249 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 55146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4100 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1922 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.30000 REMARK 3 B22 (A**2) : 3.30000 REMARK 3 B33 (A**2) : -6.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.015 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.015 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2108 ; 0.032 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1953 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2882 ; 2.804 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4455 ; 1.281 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 6.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;37.698 ;26.292 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;16.503 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;35.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 288 ; 0.207 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2517 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 516 ; 0.018 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.522 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.478 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6TR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 170023 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.189 REMARK 200 RESOLUTION RANGE LOW (A) : 73.065 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 1.55500 REMARK 200 R SYM FOR SHELL (I) : 1.55500 REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4EIC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, POTASSIUM NITRATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.40000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.36640 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.40667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 47.40000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 27.36640 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.40667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 47.40000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 27.36640 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.40667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.73281 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 106.81333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.73281 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 106.81333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.73281 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 106.81333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 17 CAC HEC C 101 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY C 54 C GLY C 54 O 0.114 REMARK 500 GLY E 6 N GLY E 6 CA 0.094 REMARK 500 ALA E 74 N ALA E 74 CA 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C 26 CG - SD - CE ANGL. DEV. = -19.6 DEGREES REMARK 500 ASP C 67 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 MET E 19 CG - SD - CE ANGL. DEV. = 11.0 DEGREES REMARK 500 VAL E 24 CG1 - CB - CG2 ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 100.87 -172.18 REMARK 500 LYS A 29 63.29 -102.04 REMARK 500 LYS A 55 113.24 -170.62 REMARK 500 ASN A 56 -123.04 57.06 REMARK 500 LYS C 29 70.80 -102.88 REMARK 500 LYS C 55 113.78 -171.11 REMARK 500 ASN C 56 -114.27 54.79 REMARK 500 LYS E 55 116.43 -165.72 REMARK 500 ASN E 56 -115.45 48.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 4 O REMARK 620 2 GLU C 37 OE2 114.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 101 NA 91.2 REMARK 620 3 HEC A 101 NB 90.3 87.9 REMARK 620 4 HEC A 101 NC 89.1 178.8 90.9 REMARK 620 5 HEC A 101 ND 90.9 92.1 178.8 89.1 REMARK 620 6 MET A 58 SD 174.4 83.2 90.0 96.4 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 44 OE1 REMARK 620 2 HOH A 205 O 135.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 13 OD1 REMARK 620 2 HOH C 208 O 108.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 18 NE2 REMARK 620 2 HEC C 101 NA 94.9 REMARK 620 3 HEC C 101 NB 90.0 88.9 REMARK 620 4 HEC C 101 NC 84.0 178.9 91.0 REMARK 620 5 HEC C 101 ND 91.8 91.5 178.1 88.6 REMARK 620 6 MET C 58 SD 179.3 84.6 90.5 96.5 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC E 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 18 NE2 REMARK 620 2 HEC E 101 NA 90.2 REMARK 620 3 HEC E 101 NB 92.4 91.7 REMARK 620 4 HEC E 101 NC 90.4 179.2 88.8 REMARK 620 5 HEC E 101 ND 87.3 87.8 179.4 91.7 REMARK 620 6 MET E 58 SD 174.3 85.3 91.2 94.1 89.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC E 101 DBREF 6TR1 A 1 86 UNP P0A3X9 CYC6_THEEB 26 111 DBREF 6TR1 C 1 87 UNP P0A3X9 CYC6_THEEB 26 112 DBREF 6TR1 E 1 86 UNP P0A3X9 CYC6_THEEB 26 111 SEQADV 6TR1 GLU A 45 UNP P0A3X9 ASP 70 CONFLICT SEQADV 6TR1 VAL A 86 UNP P0A3X9 ALA 111 CONFLICT SEQADV 6TR1 GLU C 45 UNP P0A3X9 ASP 70 CONFLICT SEQADV 6TR1 MEN C 72 UNP P0A3X9 ASP 97 CONFLICT SEQADV 6TR1 VAL E 86 UNP P0A3X9 ALA 111 CONFLICT SEQRES 1 A 86 ALA ASP LEU ALA ASN GLY ALA LYS VAL PHE SER GLY ASN SEQRES 2 A 86 CYS ALA ALA CYS HIS MET GLY GLY GLY ASN VAL VAL MET SEQRES 3 A 86 ALA ASN LYS THR LEU LYS LYS GLU ALA LEU GLU GLN PHE SEQRES 4 A 86 GLY MET TYR SER GLU GLU ALA ILE ILE TYR GLN VAL GLN SEQRES 5 A 86 HIS GLY LYS ASN ALA MET PRO ALA PHE ALA GLY ARG LEU SEQRES 6 A 86 THR ASP GLU GLN ILE GLN ASP VAL ALA ALA TYR VAL LEU SEQRES 7 A 86 ASP GLN ALA ALA LYS GLY TRP VAL SEQRES 1 C 87 ALA ASP LEU ALA ASN GLY ALA LYS VAL PHE SER GLY ASN SEQRES 2 C 87 CYS ALA ALA CYS HIS MET GLY GLY GLY ASN VAL VAL MET SEQRES 3 C 87 ALA ASN LYS THR LEU LYS LYS GLU ALA LEU GLU GLN PHE SEQRES 4 C 87 GLY MET TYR SER GLU GLU ALA ILE ILE TYR GLN VAL GLN SEQRES 5 C 87 HIS GLY LYS ASN ALA MET PRO ALA PHE ALA GLY ARG LEU SEQRES 6 C 87 THR ASP GLU GLN ILE GLN MEN VAL ALA ALA TYR VAL LEU SEQRES 7 C 87 ASP GLN ALA ALA LYS GLY TRP ALA GLY SEQRES 1 E 86 ALA ASP LEU ALA ASN GLY ALA LYS VAL PHE SER GLY ASN SEQRES 2 E 86 CYS ALA ALA CYS HIS MET GLY GLY GLY ASN VAL VAL MET SEQRES 3 E 86 ALA ASN LYS THR LEU LYS LYS GLU ALA LEU GLU GLN PHE SEQRES 4 E 86 GLY MET TYR SER GLU ASP ALA ILE ILE TYR GLN VAL GLN SEQRES 5 E 86 HIS GLY LYS ASN ALA MET PRO ALA PHE ALA GLY ARG LEU SEQRES 6 E 86 THR ASP GLU GLN ILE GLN ASP VAL ALA ALA TYR VAL LEU SEQRES 7 E 86 ASP GLN ALA ALA LYS GLY TRP VAL HET MEN C 72 9 HET HEC A 101 43 HET NA A 102 1 HET HEC C 101 43 HET NA C 102 1 HET NA C 103 1 HET NA C 104 1 HET NA C 105 1 HET HEC E 101 43 HETNAM MEN N-METHYL ASPARAGINE HETNAM HEC HEME C HETNAM NA SODIUM ION FORMUL 2 MEN C5 H10 N2 O3 FORMUL 4 HEC 3(C34 H34 FE N4 O4) FORMUL 5 NA 5(NA 1+) FORMUL 12 HOH *55(H2 O) HELIX 1 AA1 ASP A 2 CYS A 14 1 13 HELIX 2 AA2 CYS A 14 MET A 19 1 6 HELIX 3 AA3 GLY A 20 GLY A 22 5 3 HELIX 4 AA4 LYS A 32 PHE A 39 1 8 HELIX 5 AA5 SER A 43 GLY A 54 1 12 HELIX 6 AA6 THR A 66 GLY A 84 1 19 HELIX 7 AA7 ASP C 2 CYS C 14 1 13 HELIX 8 AA8 CYS C 14 MET C 19 1 6 HELIX 9 AA9 GLY C 20 GLY C 22 5 3 HELIX 10 AB1 LYS C 32 PHE C 39 1 8 HELIX 11 AB2 SER C 43 GLY C 54 1 12 HELIX 12 AB3 THR C 66 LYS C 83 1 18 HELIX 13 AB4 ASP E 2 CYS E 14 1 13 HELIX 14 AB5 CYS E 14 MET E 19 1 6 HELIX 15 AB6 GLY E 20 GLY E 22 5 3 HELIX 16 AB7 LYS E 32 PHE E 39 1 8 HELIX 17 AB8 SER E 43 GLY E 54 1 12 HELIX 18 AB9 THR E 66 GLY E 84 1 19 LINK SG CYS A 14 CAB HEC A 101 1555 1555 1.96 LINK SG CYS A 17 CAC HEC A 101 1555 1555 2.00 LINK SG CYS C 14 CAB HEC C 101 1555 1555 1.82 LINK C GLN C 71 N MEN C 72 1555 1555 1.33 LINK C MEN C 72 N VAL C 73 1555 1555 1.35 LINK SG CYS E 14 CAB HEC E 101 1555 1555 1.88 LINK SG CYS E 17 CAC HEC E 101 1555 1555 1.99 LINK O ALA A 4 NA NA C 103 1555 1555 2.55 LINK NE2 HIS A 18 FE HEC A 101 1555 1555 2.06 LINK OE1 GLU A 44 NA NA A 102 1555 1555 2.48 LINK SD MET A 58 FE HEC A 101 1555 1555 2.34 LINK NA NA A 102 O HOH A 205 1555 1555 2.90 LINK OD1 ASN C 13 NA NA C 102 1555 1555 2.72 LINK NE2 HIS C 18 FE HEC C 101 1555 1555 2.15 LINK OE2 GLU C 37 NA NA C 103 1555 1555 2.52 LINK SD MET C 58 FE HEC C 101 1555 1555 2.34 LINK NA NA C 102 O HOH C 208 1555 1555 3.03 LINK NE2 HIS E 18 FE HEC E 101 1555 1555 2.06 LINK SD MET E 58 FE HEC E 101 1555 1555 2.34 SITE 1 AC1 22 ASN A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 22 ASN A 23 VAL A 25 MET A 26 LYS A 29 SITE 3 AC1 22 THR A 30 LEU A 31 LEU A 36 PHE A 39 SITE 4 AC1 22 MET A 41 GLN A 50 VAL A 51 LYS A 55 SITE 5 AC1 22 ASN A 56 MET A 58 PRO A 59 HOH A 207 SITE 6 AC1 22 HOH A 215 HOH A 222 SITE 1 AC2 2 GLU A 44 HOH A 205 SITE 1 AC3 18 ASN C 13 CYS C 14 CYS C 17 HIS C 18 SITE 2 AC3 18 ASN C 23 MET C 26 LYS C 29 THR C 30 SITE 3 AC3 18 LEU C 31 PHE C 39 MET C 41 GLN C 50 SITE 4 AC3 18 VAL C 51 LYS C 55 ASN C 56 MET C 58 SITE 5 AC3 18 NA C 105 ALA E 57 SITE 1 AC4 4 ASN C 13 PHE C 61 ARG C 64 HOH C 208 SITE 1 AC5 3 ALA A 4 LYS C 33 GLU C 37 SITE 1 AC6 2 ASN C 28 LYS C 29 SITE 1 AC7 4 GLN C 50 LYS C 55 MET C 58 HEC C 101 SITE 1 AC8 18 ASN E 13 CYS E 14 CYS E 17 HIS E 18 SITE 2 AC8 18 ASN E 23 VAL E 25 MET E 26 LYS E 29 SITE 3 AC8 18 THR E 30 LEU E 31 PHE E 39 MET E 41 SITE 4 AC8 18 GLN E 50 VAL E 51 LYS E 55 ASN E 56 SITE 5 AC8 18 MET E 58 HOH E 205 CRYST1 94.800 94.800 160.220 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010549 0.006090 0.000000 0.00000 SCALE2 0.000000 0.012180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006241 0.00000