HEADER HYDROLASE 20-DEC-19 6TS9 TITLE CRYSTAL STRUCTURE OF GES-5 CARBAPENEMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLAGES-5, PGES-GZ_027; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBAPENEMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.MASO,D.TONDI,R.KLEIN,M.MONTANARI,C.BELLIO,G.CELENZA,R.BRENK, AUTHOR 2 L.CENDRON REVDAT 2 24-JAN-24 6TS9 1 REMARK REVDAT 1 04-MAR-20 6TS9 0 JRNL AUTH R.KLEIN,L.CENDRON,M.MONTANARI,P.BELLIO,G.CELENZA,L.MASO, JRNL AUTH 2 D.TONDI,R.BRENK JRNL TITL TARGETING THE CLASS A CARBAPENEMASE GES-5 VIA VIRTUAL JRNL TITL 2 SCREENING. JRNL REF BIOMOLECULES V. 10 2020 JRNL REFN ESSN 2218-273X JRNL PMID 32075131 JRNL DOI 10.3390/BIOM10020304 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 78894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4097 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 542 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 55.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.04645 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56430 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NABR; 0.1 M BIS TRIS PROPANE PH REMARK 280 8.5; 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.92500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.92500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 PHE A 3 REMARK 465 ILE A 4 REMARK 465 HIS A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 ILE A 12 REMARK 465 ALA A 13 REMARK 465 HIS A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 TYR A 17 REMARK 465 ALA A 18 REMARK 465 LYS A 287 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 PHE B 3 REMARK 465 ILE B 4 REMARK 465 HIS B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 ILE B 12 REMARK 465 ALA B 13 REMARK 465 HIS B 14 REMARK 465 SER B 15 REMARK 465 ALA B 16 REMARK 465 TYR B 17 REMARK 465 ALA B 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 49 CD GLU A 49 OE1 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 63 CB - CA - C ANGL. DEV. = 8.4 DEGREES REMARK 500 CYS B 233 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 63 -140.05 38.48 REMARK 500 CYS A 63 -148.21 53.32 REMARK 500 CYS A 63 -138.78 35.81 REMARK 500 TRP A 99 70.11 57.89 REMARK 500 THR A 215 -130.16 -108.37 REMARK 500 GLU A 248 14.85 58.59 REMARK 500 GLU A 248 15.53 58.59 REMARK 500 CYS B 63 -145.53 43.51 REMARK 500 CYS B 63 -149.29 50.17 REMARK 500 CYS B 63 -140.19 33.39 REMARK 500 TRP B 99 70.41 60.76 REMARK 500 THR B 215 -129.76 -104.03 REMARK 500 ALA B 259 82.90 -150.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 304 DBREF 6TS9 A 1 287 UNP Q09HD0 Q09HD0_KLEPN 1 287 DBREF 6TS9 B 1 287 UNP Q09HD0 Q09HD0_KLEPN 1 287 SEQRES 1 A 287 MET ARG PHE ILE HIS ALA LEU LEU LEU ALA GLY ILE ALA SEQRES 2 A 287 HIS SER ALA TYR ALA SER GLU LYS LEU THR PHE LYS THR SEQRES 3 A 287 ASP LEU GLU LYS LEU GLU ARG GLU LYS ALA ALA GLN ILE SEQRES 4 A 287 GLY VAL ALA ILE VAL ASP PRO GLN GLY GLU ILE VAL ALA SEQRES 5 A 287 GLY HIS ARG MET ALA GLN ARG PHE ALA MET CYS SER THR SEQRES 6 A 287 PHE LYS PHE PRO LEU ALA ALA LEU VAL PHE GLU ARG ILE SEQRES 7 A 287 ASP SER GLY THR GLU ARG GLY ASP ARG LYS LEU SER TYR SEQRES 8 A 287 GLY PRO ASP MET ILE VAL GLU TRP SER PRO ALA THR GLU SEQRES 9 A 287 ARG PHE LEU ALA SER GLY HIS MET THR VAL LEU GLU ALA SEQRES 10 A 287 ALA GLN ALA ALA VAL GLN LEU SER ASP ASN GLY ALA THR SEQRES 11 A 287 ASN LEU LEU LEU ARG GLU ILE GLY GLY PRO ALA ALA MET SEQRES 12 A 287 THR GLN TYR PHE ARG LYS ILE GLY ASP SER VAL SER ARG SEQRES 13 A 287 LEU ASP ARG LYS GLU PRO GLU MET SER ASP ASN THR PRO SEQRES 14 A 287 GLY ASP LEU ARG ASP THR THR THR PRO ILE ALA MET ALA SEQRES 15 A 287 ARG THR VAL ALA LYS VAL LEU TYR GLY GLY ALA LEU THR SEQRES 16 A 287 SER THR SER THR HIS THR ILE GLU ARG TRP LEU ILE GLY SEQRES 17 A 287 ASN GLN THR GLY ASP ALA THR LEU ARG ALA GLY PHE PRO SEQRES 18 A 287 LYS ASP TRP VAL VAL GLY GLU LYS THR GLY THR CYS ALA SEQRES 19 A 287 ASN GLY GLY ARG ASN ASP ILE GLY PHE PHE LYS ALA GLN SEQRES 20 A 287 GLU ARG ASP TYR ALA VAL ALA VAL TYR THR THR ALA PRO SEQRES 21 A 287 LYS LEU SER ALA VAL GLU ARG ASP GLU LEU VAL ALA SER SEQRES 22 A 287 VAL GLY GLN VAL ILE THR GLN LEU ILE LEU SER THR ASP SEQRES 23 A 287 LYS SEQRES 1 B 287 MET ARG PHE ILE HIS ALA LEU LEU LEU ALA GLY ILE ALA SEQRES 2 B 287 HIS SER ALA TYR ALA SER GLU LYS LEU THR PHE LYS THR SEQRES 3 B 287 ASP LEU GLU LYS LEU GLU ARG GLU LYS ALA ALA GLN ILE SEQRES 4 B 287 GLY VAL ALA ILE VAL ASP PRO GLN GLY GLU ILE VAL ALA SEQRES 5 B 287 GLY HIS ARG MET ALA GLN ARG PHE ALA MET CYS SER THR SEQRES 6 B 287 PHE LYS PHE PRO LEU ALA ALA LEU VAL PHE GLU ARG ILE SEQRES 7 B 287 ASP SER GLY THR GLU ARG GLY ASP ARG LYS LEU SER TYR SEQRES 8 B 287 GLY PRO ASP MET ILE VAL GLU TRP SER PRO ALA THR GLU SEQRES 9 B 287 ARG PHE LEU ALA SER GLY HIS MET THR VAL LEU GLU ALA SEQRES 10 B 287 ALA GLN ALA ALA VAL GLN LEU SER ASP ASN GLY ALA THR SEQRES 11 B 287 ASN LEU LEU LEU ARG GLU ILE GLY GLY PRO ALA ALA MET SEQRES 12 B 287 THR GLN TYR PHE ARG LYS ILE GLY ASP SER VAL SER ARG SEQRES 13 B 287 LEU ASP ARG LYS GLU PRO GLU MET SER ASP ASN THR PRO SEQRES 14 B 287 GLY ASP LEU ARG ASP THR THR THR PRO ILE ALA MET ALA SEQRES 15 B 287 ARG THR VAL ALA LYS VAL LEU TYR GLY GLY ALA LEU THR SEQRES 16 B 287 SER THR SER THR HIS THR ILE GLU ARG TRP LEU ILE GLY SEQRES 17 B 287 ASN GLN THR GLY ASP ALA THR LEU ARG ALA GLY PHE PRO SEQRES 18 B 287 LYS ASP TRP VAL VAL GLY GLU LYS THR GLY THR CYS ALA SEQRES 19 B 287 ASN GLY GLY ARG ASN ASP ILE GLY PHE PHE LYS ALA GLN SEQRES 20 B 287 GLU ARG ASP TYR ALA VAL ALA VAL TYR THR THR ALA PRO SEQRES 21 B 287 LYS LEU SER ALA VAL GLU ARG ASP GLU LEU VAL ALA SER SEQRES 22 B 287 VAL GLY GLN VAL ILE THR GLN LEU ILE LEU SER THR ASP SEQRES 23 B 287 LYS HET DMS A 301 4 HET BR A 302 1 HET BR A 303 1 HET DMS B 301 4 HET EDO B 302 4 HET BR B 303 1 HET BR B 304 1 HETNAM DMS DIMETHYL SULFOXIDE HETNAM BR BROMIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 DMS 2(C2 H6 O S) FORMUL 4 BR 4(BR 1-) FORMUL 7 EDO C2 H6 O2 FORMUL 10 HOH *542(H2 O) HELIX 1 AA1 SER A 19 LYS A 35 1 17 HELIX 2 AA2 CYS A 63 THR A 65 5 3 HELIX 3 AA3 PHE A 66 SER A 80 1 15 HELIX 4 AA4 GLY A 92 ILE A 96 5 5 HELIX 5 AA5 SER A 100 LEU A 107 1 8 HELIX 6 AA6 VAL A 114 LEU A 124 1 11 HELIX 7 AA7 ASP A 126 GLY A 138 1 13 HELIX 8 AA8 GLY A 138 ILE A 150 1 13 HELIX 9 AA9 PRO A 162 ASP A 166 5 5 HELIX 10 AB1 THR A 177 TYR A 190 1 14 HELIX 11 AB2 THR A 195 GLY A 208 1 14 HELIX 12 AB3 THR A 215 PHE A 220 1 6 HELIX 13 AB4 SER A 263 THR A 285 1 23 HELIX 14 AB5 GLU B 20 ALA B 36 1 17 HELIX 15 AB6 CYS B 63 THR B 65 5 3 HELIX 16 AB7 PHE B 66 SER B 80 1 15 HELIX 17 AB8 GLY B 92 ILE B 96 5 5 HELIX 18 AB9 SER B 100 LEU B 107 1 8 HELIX 19 AC1 VAL B 114 SER B 125 1 12 HELIX 20 AC2 ASP B 126 GLY B 138 1 13 HELIX 21 AC3 GLY B 138 ILE B 150 1 13 HELIX 22 AC4 PRO B 162 ASP B 166 5 5 HELIX 23 AC5 THR B 177 GLY B 191 1 15 HELIX 24 AC6 THR B 195 GLY B 208 1 14 HELIX 25 AC7 THR B 215 PHE B 220 1 6 HELIX 26 AC8 SER B 263 SER B 284 1 22 SHEET 1 AA1 5 ILE A 50 HIS A 54 0 SHEET 2 AA1 5 GLN A 38 VAL A 44 -1 N ILE A 43 O VAL A 51 SHEET 3 AA1 5 ARG A 249 THR A 258 -1 O TYR A 256 N GLY A 40 SHEET 4 AA1 5 GLY A 237 ALA A 246 -1 N GLY A 242 O VAL A 253 SHEET 5 AA1 5 VAL A 225 CYS A 233 -1 N GLY A 231 O ASN A 239 SHEET 1 AA2 2 PHE A 60 ALA A 61 0 SHEET 2 AA2 2 THR A 175 THR A 176 -1 O THR A 176 N PHE A 60 SHEET 1 AA3 2 LYS A 88 SER A 90 0 SHEET 2 AA3 2 HIS A 111 THR A 113 -1 O MET A 112 N LEU A 89 SHEET 1 AA4 5 ILE B 50 HIS B 54 0 SHEET 2 AA4 5 GLN B 38 VAL B 44 -1 N ILE B 43 O ALA B 52 SHEET 3 AA4 5 ARG B 249 THR B 258 -1 O TYR B 256 N GLY B 40 SHEET 4 AA4 5 GLY B 237 ALA B 246 -1 N GLY B 242 O VAL B 253 SHEET 5 AA4 5 VAL B 225 CYS B 233 -1 N LYS B 229 O ILE B 241 SHEET 1 AA5 2 PHE B 60 ALA B 61 0 SHEET 2 AA5 2 THR B 175 THR B 176 -1 O THR B 176 N PHE B 60 SHEET 1 AA6 2 LYS B 88 SER B 90 0 SHEET 2 AA6 2 HIS B 111 THR B 113 -1 O MET B 112 N LEU B 89 SSBOND 1 CYS A 63 CYS A 233 1555 1555 2.02 SSBOND 2 CYS B 63 CYS B 233 1555 1555 1.86 CISPEP 1 GLU A 161 PRO A 162 0 0.73 CISPEP 2 GLU B 161 PRO B 162 0 -2.58 SITE 1 AC1 7 SER A 64 SER A 125 LYS A 229 THR A 230 SITE 2 AC1 7 GLY A 231 ARG A 238 HOH A 511 SITE 1 AC2 5 ARG A 55 MET A 56 ALA A 57 PRO A 93 SITE 2 AC2 5 ASP A 94 SITE 1 AC3 6 ARG A 84 LYS A 88 PRO A 169 HOH A 409 SITE 2 AC3 6 HOH A 419 HOH A 483 SITE 1 AC4 10 SER B 64 SER B 125 THR B 211 LYS B 229 SITE 2 AC4 10 THR B 230 GLY B 231 THR B 232 ARG B 238 SITE 3 AC4 10 HOH B 458 HOH B 603 SITE 1 AC5 8 ARG A 156 HOH A 510 HOH A 609 LYS B 245 SITE 2 AC5 8 GLN B 247 GLU B 248 ARG B 249 ASP B 250 SITE 1 AC6 4 LYS A 222 HOH A 672 THR B 177 HOH B 641 SITE 1 AC7 3 ARG B 55 MET B 56 HOH B 629 CRYST1 76.300 80.360 87.850 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011383 0.00000