data_6TSV # _entry.id 6TSV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6TSV pdb_00006tsv 10.2210/pdb6tsv/pdb WWPDB D_1292105054 ? ? EMDB EMD-10566 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-22 2 'Structure model' 1 1 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_oper_list.name' 4 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6TSV _pdbx_database_status.recvd_initial_deposition_date 2019-12-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'neck of empty GTA particle computed with C6 symmetry' EMD-10542 'other EM volume' EMDB 'tail tube of native GTA particle, helical C6 symmetry' EMD-10478 'other EM volume' PDB 'neck of empty GTA particle computed with C6 symmetry' 6TOA unspecified PDB 'tail tube of native GTA particle' 6TEA unspecified EMDB 'whole virion of empty GTA particle' EMD-10592 'other EM volume' PDB 'model of whole virion of GTA particle' 6TUI unspecified EMDB 'tail tube of native GTA particle, C3 symmetry' EMD-10565 'other EM volume' EMDB 'Tail of empty GTA particle computed with helical refinement, C6 symmetry' EMD-10566 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bardy, P.' 1 ? 'Fuzik, T.' 2 ? 'Hrebik, D.' 3 ? 'Pantucek, R.' 4 ? 'Beatty, J.T.' 5 ? 'Plevka, P.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 3034 _citation.page_last 3034 _citation.title 'Structure and mechanism of DNA delivery of a gene transfer agent.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-020-16669-9 _citation.pdbx_database_id_PubMed 32541663 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bardy, P.' 1 0000-0002-1223-2584 primary 'Fuzik, T.' 2 0000-0002-1190-0210 primary 'Hrebik, D.' 3 ? primary 'Pantucek, R.' 4 0000-0002-3950-675X primary 'Thomas Beatty, J.' 5 0000-0002-1425-0532 primary 'Plevka, P.' 6 0000-0003-4215-3315 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Tail tube protein Rcc01691' _entity.formula_weight 14420.007 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAAQNGKDLLIKLDLTGSGQFETIAGLRATRISFNAETVDVTSLESQGGWRELLGGAGVRSASISGAGVFKDADTDERAR QIFFDGEVPEFQVIIPDFGIVQGPFMITSIDYAGSHNGEASYELAMASAGALSFTAI ; _entity_poly.pdbx_seq_one_letter_code_can ;MAAQNGKDLLIKLDLTGSGQFETIAGLRATRISFNAETVDVTSLESQGGWRELLGGAGVRSASISGAGVFKDADTDERAR QIFFDGEVPEFQVIIPDFGIVQGPFMITSIDYAGSHNGEASYELAMASAGALSFTAI ; _entity_poly.pdbx_strand_id B,A,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ALA n 1 4 GLN n 1 5 ASN n 1 6 GLY n 1 7 LYS n 1 8 ASP n 1 9 LEU n 1 10 LEU n 1 11 ILE n 1 12 LYS n 1 13 LEU n 1 14 ASP n 1 15 LEU n 1 16 THR n 1 17 GLY n 1 18 SER n 1 19 GLY n 1 20 GLN n 1 21 PHE n 1 22 GLU n 1 23 THR n 1 24 ILE n 1 25 ALA n 1 26 GLY n 1 27 LEU n 1 28 ARG n 1 29 ALA n 1 30 THR n 1 31 ARG n 1 32 ILE n 1 33 SER n 1 34 PHE n 1 35 ASN n 1 36 ALA n 1 37 GLU n 1 38 THR n 1 39 VAL n 1 40 ASP n 1 41 VAL n 1 42 THR n 1 43 SER n 1 44 LEU n 1 45 GLU n 1 46 SER n 1 47 GLN n 1 48 GLY n 1 49 GLY n 1 50 TRP n 1 51 ARG n 1 52 GLU n 1 53 LEU n 1 54 LEU n 1 55 GLY n 1 56 GLY n 1 57 ALA n 1 58 GLY n 1 59 VAL n 1 60 ARG n 1 61 SER n 1 62 ALA n 1 63 SER n 1 64 ILE n 1 65 SER n 1 66 GLY n 1 67 ALA n 1 68 GLY n 1 69 VAL n 1 70 PHE n 1 71 LYS n 1 72 ASP n 1 73 ALA n 1 74 ASP n 1 75 THR n 1 76 ASP n 1 77 GLU n 1 78 ARG n 1 79 ALA n 1 80 ARG n 1 81 GLN n 1 82 ILE n 1 83 PHE n 1 84 PHE n 1 85 ASP n 1 86 GLY n 1 87 GLU n 1 88 VAL n 1 89 PRO n 1 90 GLU n 1 91 PHE n 1 92 GLN n 1 93 VAL n 1 94 ILE n 1 95 ILE n 1 96 PRO n 1 97 ASP n 1 98 PHE n 1 99 GLY n 1 100 ILE n 1 101 VAL n 1 102 GLN n 1 103 GLY n 1 104 PRO n 1 105 PHE n 1 106 MET n 1 107 ILE n 1 108 THR n 1 109 SER n 1 110 ILE n 1 111 ASP n 1 112 TYR n 1 113 ALA n 1 114 GLY n 1 115 SER n 1 116 HIS n 1 117 ASN n 1 118 GLY n 1 119 GLU n 1 120 ALA n 1 121 SER n 1 122 TYR n 1 123 GLU n 1 124 LEU n 1 125 ALA n 1 126 MET n 1 127 ALA n 1 128 SER n 1 129 ALA n 1 130 GLY n 1 131 ALA n 1 132 LEU n 1 133 SER n 1 134 PHE n 1 135 THR n 1 136 ALA n 1 137 ILE n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 137 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Rhodobacter capsulatus DE442' _entity_src_nat.pdbx_ncbi_taxonomy_id 1415160 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? B . n A 1 2 ALA 2 2 ? ? ? B . n A 1 3 ALA 3 3 3 ALA ALA B . n A 1 4 GLN 4 4 4 GLN GLN B . n A 1 5 ASN 5 5 5 ASN ASN B . n A 1 6 GLY 6 6 6 GLY GLY B . n A 1 7 LYS 7 7 7 LYS LYS B . n A 1 8 ASP 8 8 8 ASP ASP B . n A 1 9 LEU 9 9 9 LEU LEU B . n A 1 10 LEU 10 10 10 LEU LEU B . n A 1 11 ILE 11 11 11 ILE ILE B . n A 1 12 LYS 12 12 12 LYS LYS B . n A 1 13 LEU 13 13 13 LEU LEU B . n A 1 14 ASP 14 14 14 ASP ASP B . n A 1 15 LEU 15 15 15 LEU LEU B . n A 1 16 THR 16 16 16 THR THR B . n A 1 17 GLY 17 17 17 GLY GLY B . n A 1 18 SER 18 18 18 SER SER B . n A 1 19 GLY 19 19 19 GLY GLY B . n A 1 20 GLN 20 20 20 GLN GLN B . n A 1 21 PHE 21 21 21 PHE PHE B . n A 1 22 GLU 22 22 22 GLU GLU B . n A 1 23 THR 23 23 23 THR THR B . n A 1 24 ILE 24 24 24 ILE ILE B . n A 1 25 ALA 25 25 25 ALA ALA B . n A 1 26 GLY 26 26 26 GLY GLY B . n A 1 27 LEU 27 27 27 LEU LEU B . n A 1 28 ARG 28 28 28 ARG ARG B . n A 1 29 ALA 29 29 29 ALA ALA B . n A 1 30 THR 30 30 30 THR THR B . n A 1 31 ARG 31 31 31 ARG ARG B . n A 1 32 ILE 32 32 32 ILE ILE B . n A 1 33 SER 33 33 33 SER SER B . n A 1 34 PHE 34 34 34 PHE PHE B . n A 1 35 ASN 35 35 35 ASN ASN B . n A 1 36 ALA 36 36 36 ALA ALA B . n A 1 37 GLU 37 37 37 GLU GLU B . n A 1 38 THR 38 38 38 THR THR B . n A 1 39 VAL 39 39 39 VAL VAL B . n A 1 40 ASP 40 40 40 ASP ASP B . n A 1 41 VAL 41 41 41 VAL VAL B . n A 1 42 THR 42 42 42 THR THR B . n A 1 43 SER 43 43 43 SER SER B . n A 1 44 LEU 44 44 44 LEU LEU B . n A 1 45 GLU 45 45 45 GLU GLU B . n A 1 46 SER 46 46 46 SER SER B . n A 1 47 GLN 47 47 47 GLN GLN B . n A 1 48 GLY 48 48 48 GLY GLY B . n A 1 49 GLY 49 49 49 GLY GLY B . n A 1 50 TRP 50 50 50 TRP TRP B . n A 1 51 ARG 51 51 51 ARG ARG B . n A 1 52 GLU 52 52 52 GLU GLU B . n A 1 53 LEU 53 53 53 LEU LEU B . n A 1 54 LEU 54 54 54 LEU LEU B . n A 1 55 GLY 55 55 55 GLY GLY B . n A 1 56 GLY 56 56 56 GLY GLY B . n A 1 57 ALA 57 57 57 ALA ALA B . n A 1 58 GLY 58 58 58 GLY GLY B . n A 1 59 VAL 59 59 59 VAL VAL B . n A 1 60 ARG 60 60 60 ARG ARG B . n A 1 61 SER 61 61 61 SER SER B . n A 1 62 ALA 62 62 62 ALA ALA B . n A 1 63 SER 63 63 63 SER SER B . n A 1 64 ILE 64 64 64 ILE ILE B . n A 1 65 SER 65 65 65 SER SER B . n A 1 66 GLY 66 66 66 GLY GLY B . n A 1 67 ALA 67 67 67 ALA ALA B . n A 1 68 GLY 68 68 68 GLY GLY B . n A 1 69 VAL 69 69 69 VAL VAL B . n A 1 70 PHE 70 70 70 PHE PHE B . n A 1 71 LYS 71 71 71 LYS LYS B . n A 1 72 ASP 72 72 72 ASP ASP B . n A 1 73 ALA 73 73 73 ALA ALA B . n A 1 74 ASP 74 74 74 ASP ASP B . n A 1 75 THR 75 75 75 THR THR B . n A 1 76 ASP 76 76 76 ASP ASP B . n A 1 77 GLU 77 77 77 GLU GLU B . n A 1 78 ARG 78 78 78 ARG ARG B . n A 1 79 ALA 79 79 79 ALA ALA B . n A 1 80 ARG 80 80 80 ARG ARG B . n A 1 81 GLN 81 81 81 GLN GLN B . n A 1 82 ILE 82 82 82 ILE ILE B . n A 1 83 PHE 83 83 83 PHE PHE B . n A 1 84 PHE 84 84 84 PHE PHE B . n A 1 85 ASP 85 85 85 ASP ASP B . n A 1 86 GLY 86 86 86 GLY GLY B . n A 1 87 GLU 87 87 87 GLU GLU B . n A 1 88 VAL 88 88 88 VAL VAL B . n A 1 89 PRO 89 89 89 PRO PRO B . n A 1 90 GLU 90 90 90 GLU GLU B . n A 1 91 PHE 91 91 91 PHE PHE B . n A 1 92 GLN 92 92 92 GLN GLN B . n A 1 93 VAL 93 93 93 VAL VAL B . n A 1 94 ILE 94 94 94 ILE ILE B . n A 1 95 ILE 95 95 95 ILE ILE B . n A 1 96 PRO 96 96 96 PRO PRO B . n A 1 97 ASP 97 97 97 ASP ASP B . n A 1 98 PHE 98 98 98 PHE PHE B . n A 1 99 GLY 99 99 99 GLY GLY B . n A 1 100 ILE 100 100 100 ILE ILE B . n A 1 101 VAL 101 101 101 VAL VAL B . n A 1 102 GLN 102 102 102 GLN GLN B . n A 1 103 GLY 103 103 103 GLY GLY B . n A 1 104 PRO 104 104 104 PRO PRO B . n A 1 105 PHE 105 105 105 PHE PHE B . n A 1 106 MET 106 106 106 MET MET B . n A 1 107 ILE 107 107 107 ILE ILE B . n A 1 108 THR 108 108 108 THR THR B . n A 1 109 SER 109 109 109 SER SER B . n A 1 110 ILE 110 110 110 ILE ILE B . n A 1 111 ASP 111 111 111 ASP ASP B . n A 1 112 TYR 112 112 112 TYR TYR B . n A 1 113 ALA 113 113 113 ALA ALA B . n A 1 114 GLY 114 114 114 GLY GLY B . n A 1 115 SER 115 115 115 SER SER B . n A 1 116 HIS 116 116 116 HIS HIS B . n A 1 117 ASN 117 117 117 ASN ASN B . n A 1 118 GLY 118 118 118 GLY GLY B . n A 1 119 GLU 119 119 119 GLU GLU B . n A 1 120 ALA 120 120 120 ALA ALA B . n A 1 121 SER 121 121 121 SER SER B . n A 1 122 TYR 122 122 122 TYR TYR B . n A 1 123 GLU 123 123 123 GLU GLU B . n A 1 124 LEU 124 124 124 LEU LEU B . n A 1 125 ALA 125 125 125 ALA ALA B . n A 1 126 MET 126 126 126 MET MET B . n A 1 127 ALA 127 127 127 ALA ALA B . n A 1 128 SER 128 128 128 SER SER B . n A 1 129 ALA 129 129 129 ALA ALA B . n A 1 130 GLY 130 130 130 GLY GLY B . n A 1 131 ALA 131 131 131 ALA ALA B . n A 1 132 LEU 132 132 132 LEU LEU B . n A 1 133 SER 133 133 133 SER SER B . n A 1 134 PHE 134 134 134 PHE PHE B . n A 1 135 THR 135 135 135 THR THR B . n A 1 136 ALA 136 136 136 ALA ALA B . n A 1 137 ILE 137 137 ? ? ? B . n B 1 1 MET 1 1 ? ? ? A . n B 1 2 ALA 2 2 ? ? ? A . n B 1 3 ALA 3 3 3 ALA ALA A . n B 1 4 GLN 4 4 4 GLN GLN A . n B 1 5 ASN 5 5 5 ASN ASN A . n B 1 6 GLY 6 6 6 GLY GLY A . n B 1 7 LYS 7 7 7 LYS LYS A . n B 1 8 ASP 8 8 8 ASP ASP A . n B 1 9 LEU 9 9 9 LEU LEU A . n B 1 10 LEU 10 10 10 LEU LEU A . n B 1 11 ILE 11 11 11 ILE ILE A . n B 1 12 LYS 12 12 12 LYS LYS A . n B 1 13 LEU 13 13 13 LEU LEU A . n B 1 14 ASP 14 14 14 ASP ASP A . n B 1 15 LEU 15 15 15 LEU LEU A . n B 1 16 THR 16 16 16 THR THR A . n B 1 17 GLY 17 17 17 GLY GLY A . n B 1 18 SER 18 18 18 SER SER A . n B 1 19 GLY 19 19 19 GLY GLY A . n B 1 20 GLN 20 20 20 GLN GLN A . n B 1 21 PHE 21 21 21 PHE PHE A . n B 1 22 GLU 22 22 22 GLU GLU A . n B 1 23 THR 23 23 23 THR THR A . n B 1 24 ILE 24 24 24 ILE ILE A . n B 1 25 ALA 25 25 25 ALA ALA A . n B 1 26 GLY 26 26 26 GLY GLY A . n B 1 27 LEU 27 27 27 LEU LEU A . n B 1 28 ARG 28 28 28 ARG ARG A . n B 1 29 ALA 29 29 29 ALA ALA A . n B 1 30 THR 30 30 30 THR THR A . n B 1 31 ARG 31 31 31 ARG ARG A . n B 1 32 ILE 32 32 32 ILE ILE A . n B 1 33 SER 33 33 33 SER SER A . n B 1 34 PHE 34 34 34 PHE PHE A . n B 1 35 ASN 35 35 35 ASN ASN A . n B 1 36 ALA 36 36 36 ALA ALA A . n B 1 37 GLU 37 37 37 GLU GLU A . n B 1 38 THR 38 38 38 THR THR A . n B 1 39 VAL 39 39 39 VAL VAL A . n B 1 40 ASP 40 40 40 ASP ASP A . n B 1 41 VAL 41 41 41 VAL VAL A . n B 1 42 THR 42 42 42 THR THR A . n B 1 43 SER 43 43 43 SER SER A . n B 1 44 LEU 44 44 44 LEU LEU A . n B 1 45 GLU 45 45 45 GLU GLU A . n B 1 46 SER 46 46 46 SER SER A . n B 1 47 GLN 47 47 47 GLN GLN A . n B 1 48 GLY 48 48 48 GLY GLY A . n B 1 49 GLY 49 49 49 GLY GLY A . n B 1 50 TRP 50 50 50 TRP TRP A . n B 1 51 ARG 51 51 51 ARG ARG A . n B 1 52 GLU 52 52 52 GLU GLU A . n B 1 53 LEU 53 53 53 LEU LEU A . n B 1 54 LEU 54 54 54 LEU LEU A . n B 1 55 GLY 55 55 55 GLY GLY A . n B 1 56 GLY 56 56 56 GLY GLY A . n B 1 57 ALA 57 57 57 ALA ALA A . n B 1 58 GLY 58 58 58 GLY GLY A . n B 1 59 VAL 59 59 59 VAL VAL A . n B 1 60 ARG 60 60 60 ARG ARG A . n B 1 61 SER 61 61 61 SER SER A . n B 1 62 ALA 62 62 62 ALA ALA A . n B 1 63 SER 63 63 63 SER SER A . n B 1 64 ILE 64 64 64 ILE ILE A . n B 1 65 SER 65 65 65 SER SER A . n B 1 66 GLY 66 66 66 GLY GLY A . n B 1 67 ALA 67 67 67 ALA ALA A . n B 1 68 GLY 68 68 68 GLY GLY A . n B 1 69 VAL 69 69 69 VAL VAL A . n B 1 70 PHE 70 70 70 PHE PHE A . n B 1 71 LYS 71 71 71 LYS LYS A . n B 1 72 ASP 72 72 72 ASP ASP A . n B 1 73 ALA 73 73 73 ALA ALA A . n B 1 74 ASP 74 74 74 ASP ASP A . n B 1 75 THR 75 75 75 THR THR A . n B 1 76 ASP 76 76 76 ASP ASP A . n B 1 77 GLU 77 77 77 GLU GLU A . n B 1 78 ARG 78 78 78 ARG ARG A . n B 1 79 ALA 79 79 79 ALA ALA A . n B 1 80 ARG 80 80 80 ARG ARG A . n B 1 81 GLN 81 81 81 GLN GLN A . n B 1 82 ILE 82 82 82 ILE ILE A . n B 1 83 PHE 83 83 83 PHE PHE A . n B 1 84 PHE 84 84 84 PHE PHE A . n B 1 85 ASP 85 85 85 ASP ASP A . n B 1 86 GLY 86 86 86 GLY GLY A . n B 1 87 GLU 87 87 87 GLU GLU A . n B 1 88 VAL 88 88 88 VAL VAL A . n B 1 89 PRO 89 89 89 PRO PRO A . n B 1 90 GLU 90 90 90 GLU GLU A . n B 1 91 PHE 91 91 91 PHE PHE A . n B 1 92 GLN 92 92 92 GLN GLN A . n B 1 93 VAL 93 93 93 VAL VAL A . n B 1 94 ILE 94 94 94 ILE ILE A . n B 1 95 ILE 95 95 95 ILE ILE A . n B 1 96 PRO 96 96 96 PRO PRO A . n B 1 97 ASP 97 97 97 ASP ASP A . n B 1 98 PHE 98 98 98 PHE PHE A . n B 1 99 GLY 99 99 99 GLY GLY A . n B 1 100 ILE 100 100 100 ILE ILE A . n B 1 101 VAL 101 101 101 VAL VAL A . n B 1 102 GLN 102 102 102 GLN GLN A . n B 1 103 GLY 103 103 103 GLY GLY A . n B 1 104 PRO 104 104 104 PRO PRO A . n B 1 105 PHE 105 105 105 PHE PHE A . n B 1 106 MET 106 106 106 MET MET A . n B 1 107 ILE 107 107 107 ILE ILE A . n B 1 108 THR 108 108 108 THR THR A . n B 1 109 SER 109 109 109 SER SER A . n B 1 110 ILE 110 110 110 ILE ILE A . n B 1 111 ASP 111 111 111 ASP ASP A . n B 1 112 TYR 112 112 112 TYR TYR A . n B 1 113 ALA 113 113 113 ALA ALA A . n B 1 114 GLY 114 114 114 GLY GLY A . n B 1 115 SER 115 115 115 SER SER A . n B 1 116 HIS 116 116 116 HIS HIS A . n B 1 117 ASN 117 117 117 ASN ASN A . n B 1 118 GLY 118 118 118 GLY GLY A . n B 1 119 GLU 119 119 119 GLU GLU A . n B 1 120 ALA 120 120 120 ALA ALA A . n B 1 121 SER 121 121 121 SER SER A . n B 1 122 TYR 122 122 122 TYR TYR A . n B 1 123 GLU 123 123 123 GLU GLU A . n B 1 124 LEU 124 124 124 LEU LEU A . n B 1 125 ALA 125 125 125 ALA ALA A . n B 1 126 MET 126 126 126 MET MET A . n B 1 127 ALA 127 127 127 ALA ALA A . n B 1 128 SER 128 128 128 SER SER A . n B 1 129 ALA 129 129 129 ALA ALA A . n B 1 130 GLY 130 130 130 GLY GLY A . n B 1 131 ALA 131 131 131 ALA ALA A . n B 1 132 LEU 132 132 132 LEU LEU A . n B 1 133 SER 133 133 133 SER SER A . n B 1 134 PHE 134 134 134 PHE PHE A . n B 1 135 THR 135 135 135 THR THR A . n B 1 136 ALA 136 136 136 ALA ALA A . n B 1 137 ILE 137 137 ? ? ? A . n C 1 1 MET 1 1 ? ? ? C . n C 1 2 ALA 2 2 ? ? ? C . n C 1 3 ALA 3 3 3 ALA ALA C . n C 1 4 GLN 4 4 4 GLN GLN C . n C 1 5 ASN 5 5 5 ASN ASN C . n C 1 6 GLY 6 6 6 GLY GLY C . n C 1 7 LYS 7 7 7 LYS LYS C . n C 1 8 ASP 8 8 8 ASP ASP C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 LEU 10 10 10 LEU LEU C . n C 1 11 ILE 11 11 11 ILE ILE C . n C 1 12 LYS 12 12 12 LYS LYS C . n C 1 13 LEU 13 13 13 LEU LEU C . n C 1 14 ASP 14 14 14 ASP ASP C . n C 1 15 LEU 15 15 15 LEU LEU C . n C 1 16 THR 16 16 16 THR THR C . n C 1 17 GLY 17 17 17 GLY GLY C . n C 1 18 SER 18 18 18 SER SER C . n C 1 19 GLY 19 19 19 GLY GLY C . n C 1 20 GLN 20 20 20 GLN GLN C . n C 1 21 PHE 21 21 21 PHE PHE C . n C 1 22 GLU 22 22 22 GLU GLU C . n C 1 23 THR 23 23 23 THR THR C . n C 1 24 ILE 24 24 24 ILE ILE C . n C 1 25 ALA 25 25 25 ALA ALA C . n C 1 26 GLY 26 26 26 GLY GLY C . n C 1 27 LEU 27 27 27 LEU LEU C . n C 1 28 ARG 28 28 28 ARG ARG C . n C 1 29 ALA 29 29 29 ALA ALA C . n C 1 30 THR 30 30 30 THR THR C . n C 1 31 ARG 31 31 31 ARG ARG C . n C 1 32 ILE 32 32 32 ILE ILE C . n C 1 33 SER 33 33 33 SER SER C . n C 1 34 PHE 34 34 34 PHE PHE C . n C 1 35 ASN 35 35 35 ASN ASN C . n C 1 36 ALA 36 36 36 ALA ALA C . n C 1 37 GLU 37 37 37 GLU GLU C . n C 1 38 THR 38 38 38 THR THR C . n C 1 39 VAL 39 39 39 VAL VAL C . n C 1 40 ASP 40 40 40 ASP ASP C . n C 1 41 VAL 41 41 41 VAL VAL C . n C 1 42 THR 42 42 42 THR THR C . n C 1 43 SER 43 43 43 SER SER C . n C 1 44 LEU 44 44 44 LEU LEU C . n C 1 45 GLU 45 45 45 GLU GLU C . n C 1 46 SER 46 46 46 SER SER C . n C 1 47 GLN 47 47 47 GLN GLN C . n C 1 48 GLY 48 48 48 GLY GLY C . n C 1 49 GLY 49 49 49 GLY GLY C . n C 1 50 TRP 50 50 50 TRP TRP C . n C 1 51 ARG 51 51 51 ARG ARG C . n C 1 52 GLU 52 52 52 GLU GLU C . n C 1 53 LEU 53 53 53 LEU LEU C . n C 1 54 LEU 54 54 54 LEU LEU C . n C 1 55 GLY 55 55 55 GLY GLY C . n C 1 56 GLY 56 56 56 GLY GLY C . n C 1 57 ALA 57 57 57 ALA ALA C . n C 1 58 GLY 58 58 58 GLY GLY C . n C 1 59 VAL 59 59 59 VAL VAL C . n C 1 60 ARG 60 60 60 ARG ARG C . n C 1 61 SER 61 61 61 SER SER C . n C 1 62 ALA 62 62 62 ALA ALA C . n C 1 63 SER 63 63 63 SER SER C . n C 1 64 ILE 64 64 64 ILE ILE C . n C 1 65 SER 65 65 65 SER SER C . n C 1 66 GLY 66 66 66 GLY GLY C . n C 1 67 ALA 67 67 67 ALA ALA C . n C 1 68 GLY 68 68 68 GLY GLY C . n C 1 69 VAL 69 69 69 VAL VAL C . n C 1 70 PHE 70 70 70 PHE PHE C . n C 1 71 LYS 71 71 71 LYS LYS C . n C 1 72 ASP 72 72 72 ASP ASP C . n C 1 73 ALA 73 73 73 ALA ALA C . n C 1 74 ASP 74 74 74 ASP ASP C . n C 1 75 THR 75 75 75 THR THR C . n C 1 76 ASP 76 76 76 ASP ASP C . n C 1 77 GLU 77 77 77 GLU GLU C . n C 1 78 ARG 78 78 78 ARG ARG C . n C 1 79 ALA 79 79 79 ALA ALA C . n C 1 80 ARG 80 80 80 ARG ARG C . n C 1 81 GLN 81 81 81 GLN GLN C . n C 1 82 ILE 82 82 82 ILE ILE C . n C 1 83 PHE 83 83 83 PHE PHE C . n C 1 84 PHE 84 84 84 PHE PHE C . n C 1 85 ASP 85 85 85 ASP ASP C . n C 1 86 GLY 86 86 86 GLY GLY C . n C 1 87 GLU 87 87 87 GLU GLU C . n C 1 88 VAL 88 88 88 VAL VAL C . n C 1 89 PRO 89 89 89 PRO PRO C . n C 1 90 GLU 90 90 90 GLU GLU C . n C 1 91 PHE 91 91 91 PHE PHE C . n C 1 92 GLN 92 92 92 GLN GLN C . n C 1 93 VAL 93 93 93 VAL VAL C . n C 1 94 ILE 94 94 94 ILE ILE C . n C 1 95 ILE 95 95 95 ILE ILE C . n C 1 96 PRO 96 96 96 PRO PRO C . n C 1 97 ASP 97 97 97 ASP ASP C . n C 1 98 PHE 98 98 98 PHE PHE C . n C 1 99 GLY 99 99 99 GLY GLY C . n C 1 100 ILE 100 100 100 ILE ILE C . n C 1 101 VAL 101 101 101 VAL VAL C . n C 1 102 GLN 102 102 102 GLN GLN C . n C 1 103 GLY 103 103 103 GLY GLY C . n C 1 104 PRO 104 104 104 PRO PRO C . n C 1 105 PHE 105 105 105 PHE PHE C . n C 1 106 MET 106 106 106 MET MET C . n C 1 107 ILE 107 107 107 ILE ILE C . n C 1 108 THR 108 108 108 THR THR C . n C 1 109 SER 109 109 109 SER SER C . n C 1 110 ILE 110 110 110 ILE ILE C . n C 1 111 ASP 111 111 111 ASP ASP C . n C 1 112 TYR 112 112 112 TYR TYR C . n C 1 113 ALA 113 113 113 ALA ALA C . n C 1 114 GLY 114 114 114 GLY GLY C . n C 1 115 SER 115 115 115 SER SER C . n C 1 116 HIS 116 116 116 HIS HIS C . n C 1 117 ASN 117 117 117 ASN ASN C . n C 1 118 GLY 118 118 118 GLY GLY C . n C 1 119 GLU 119 119 119 GLU GLU C . n C 1 120 ALA 120 120 120 ALA ALA C . n C 1 121 SER 121 121 121 SER SER C . n C 1 122 TYR 122 122 122 TYR TYR C . n C 1 123 GLU 123 123 123 GLU GLU C . n C 1 124 LEU 124 124 124 LEU LEU C . n C 1 125 ALA 125 125 125 ALA ALA C . n C 1 126 MET 126 126 126 MET MET C . n C 1 127 ALA 127 127 127 ALA ALA C . n C 1 128 SER 128 128 128 SER SER C . n C 1 129 ALA 129 129 129 ALA ALA C . n C 1 130 GLY 130 130 130 GLY GLY C . n C 1 131 ALA 131 131 131 ALA ALA C . n C 1 132 LEU 132 132 132 LEU LEU C . n C 1 133 SER 133 133 133 SER SER C . n C 1 134 PHE 134 134 134 PHE PHE C . n C 1 135 THR 135 135 135 THR THR C . n C 1 136 ALA 136 136 136 ALA ALA C . n C 1 137 ILE 137 137 ? ? ? C . n D 1 1 MET 1 1 ? ? ? D . n D 1 2 ALA 2 2 ? ? ? D . n D 1 3 ALA 3 3 3 ALA ALA D . n D 1 4 GLN 4 4 4 GLN GLN D . n D 1 5 ASN 5 5 5 ASN ASN D . n D 1 6 GLY 6 6 6 GLY GLY D . n D 1 7 LYS 7 7 7 LYS LYS D . n D 1 8 ASP 8 8 8 ASP ASP D . n D 1 9 LEU 9 9 9 LEU LEU D . n D 1 10 LEU 10 10 10 LEU LEU D . n D 1 11 ILE 11 11 11 ILE ILE D . n D 1 12 LYS 12 12 12 LYS LYS D . n D 1 13 LEU 13 13 13 LEU LEU D . n D 1 14 ASP 14 14 14 ASP ASP D . n D 1 15 LEU 15 15 15 LEU LEU D . n D 1 16 THR 16 16 16 THR THR D . n D 1 17 GLY 17 17 17 GLY GLY D . n D 1 18 SER 18 18 18 SER SER D . n D 1 19 GLY 19 19 19 GLY GLY D . n D 1 20 GLN 20 20 20 GLN GLN D . n D 1 21 PHE 21 21 21 PHE PHE D . n D 1 22 GLU 22 22 22 GLU GLU D . n D 1 23 THR 23 23 23 THR THR D . n D 1 24 ILE 24 24 24 ILE ILE D . n D 1 25 ALA 25 25 25 ALA ALA D . n D 1 26 GLY 26 26 26 GLY GLY D . n D 1 27 LEU 27 27 27 LEU LEU D . n D 1 28 ARG 28 28 28 ARG ARG D . n D 1 29 ALA 29 29 29 ALA ALA D . n D 1 30 THR 30 30 30 THR THR D . n D 1 31 ARG 31 31 31 ARG ARG D . n D 1 32 ILE 32 32 32 ILE ILE D . n D 1 33 SER 33 33 33 SER SER D . n D 1 34 PHE 34 34 34 PHE PHE D . n D 1 35 ASN 35 35 35 ASN ASN D . n D 1 36 ALA 36 36 36 ALA ALA D . n D 1 37 GLU 37 37 37 GLU GLU D . n D 1 38 THR 38 38 38 THR THR D . n D 1 39 VAL 39 39 39 VAL VAL D . n D 1 40 ASP 40 40 40 ASP ASP D . n D 1 41 VAL 41 41 41 VAL VAL D . n D 1 42 THR 42 42 42 THR THR D . n D 1 43 SER 43 43 43 SER SER D . n D 1 44 LEU 44 44 44 LEU LEU D . n D 1 45 GLU 45 45 45 GLU GLU D . n D 1 46 SER 46 46 46 SER SER D . n D 1 47 GLN 47 47 47 GLN GLN D . n D 1 48 GLY 48 48 48 GLY GLY D . n D 1 49 GLY 49 49 49 GLY GLY D . n D 1 50 TRP 50 50 50 TRP TRP D . n D 1 51 ARG 51 51 51 ARG ARG D . n D 1 52 GLU 52 52 52 GLU GLU D . n D 1 53 LEU 53 53 53 LEU LEU D . n D 1 54 LEU 54 54 54 LEU LEU D . n D 1 55 GLY 55 55 55 GLY GLY D . n D 1 56 GLY 56 56 56 GLY GLY D . n D 1 57 ALA 57 57 57 ALA ALA D . n D 1 58 GLY 58 58 58 GLY GLY D . n D 1 59 VAL 59 59 59 VAL VAL D . n D 1 60 ARG 60 60 60 ARG ARG D . n D 1 61 SER 61 61 61 SER SER D . n D 1 62 ALA 62 62 62 ALA ALA D . n D 1 63 SER 63 63 63 SER SER D . n D 1 64 ILE 64 64 64 ILE ILE D . n D 1 65 SER 65 65 65 SER SER D . n D 1 66 GLY 66 66 66 GLY GLY D . n D 1 67 ALA 67 67 67 ALA ALA D . n D 1 68 GLY 68 68 68 GLY GLY D . n D 1 69 VAL 69 69 69 VAL VAL D . n D 1 70 PHE 70 70 70 PHE PHE D . n D 1 71 LYS 71 71 71 LYS LYS D . n D 1 72 ASP 72 72 72 ASP ASP D . n D 1 73 ALA 73 73 73 ALA ALA D . n D 1 74 ASP 74 74 74 ASP ASP D . n D 1 75 THR 75 75 75 THR THR D . n D 1 76 ASP 76 76 76 ASP ASP D . n D 1 77 GLU 77 77 77 GLU GLU D . n D 1 78 ARG 78 78 78 ARG ARG D . n D 1 79 ALA 79 79 79 ALA ALA D . n D 1 80 ARG 80 80 80 ARG ARG D . n D 1 81 GLN 81 81 81 GLN GLN D . n D 1 82 ILE 82 82 82 ILE ILE D . n D 1 83 PHE 83 83 83 PHE PHE D . n D 1 84 PHE 84 84 84 PHE PHE D . n D 1 85 ASP 85 85 85 ASP ASP D . n D 1 86 GLY 86 86 86 GLY GLY D . n D 1 87 GLU 87 87 87 GLU GLU D . n D 1 88 VAL 88 88 88 VAL VAL D . n D 1 89 PRO 89 89 89 PRO PRO D . n D 1 90 GLU 90 90 90 GLU GLU D . n D 1 91 PHE 91 91 91 PHE PHE D . n D 1 92 GLN 92 92 92 GLN GLN D . n D 1 93 VAL 93 93 93 VAL VAL D . n D 1 94 ILE 94 94 94 ILE ILE D . n D 1 95 ILE 95 95 95 ILE ILE D . n D 1 96 PRO 96 96 96 PRO PRO D . n D 1 97 ASP 97 97 97 ASP ASP D . n D 1 98 PHE 98 98 98 PHE PHE D . n D 1 99 GLY 99 99 99 GLY GLY D . n D 1 100 ILE 100 100 100 ILE ILE D . n D 1 101 VAL 101 101 101 VAL VAL D . n D 1 102 GLN 102 102 102 GLN GLN D . n D 1 103 GLY 103 103 103 GLY GLY D . n D 1 104 PRO 104 104 104 PRO PRO D . n D 1 105 PHE 105 105 105 PHE PHE D . n D 1 106 MET 106 106 106 MET MET D . n D 1 107 ILE 107 107 107 ILE ILE D . n D 1 108 THR 108 108 108 THR THR D . n D 1 109 SER 109 109 109 SER SER D . n D 1 110 ILE 110 110 110 ILE ILE D . n D 1 111 ASP 111 111 111 ASP ASP D . n D 1 112 TYR 112 112 112 TYR TYR D . n D 1 113 ALA 113 113 113 ALA ALA D . n D 1 114 GLY 114 114 114 GLY GLY D . n D 1 115 SER 115 115 115 SER SER D . n D 1 116 HIS 116 116 116 HIS HIS D . n D 1 117 ASN 117 117 117 ASN ASN D . n D 1 118 GLY 118 118 118 GLY GLY D . n D 1 119 GLU 119 119 119 GLU GLU D . n D 1 120 ALA 120 120 120 ALA ALA D . n D 1 121 SER 121 121 121 SER SER D . n D 1 122 TYR 122 122 122 TYR TYR D . n D 1 123 GLU 123 123 123 GLU GLU D . n D 1 124 LEU 124 124 124 LEU LEU D . n D 1 125 ALA 125 125 125 ALA ALA D . n D 1 126 MET 126 126 126 MET MET D . n D 1 127 ALA 127 127 127 ALA ALA D . n D 1 128 SER 128 128 128 SER SER D . n D 1 129 ALA 129 129 129 ALA ALA D . n D 1 130 GLY 130 130 130 GLY GLY D . n D 1 131 ALA 131 131 131 ALA ALA D . n D 1 132 LEU 132 132 132 LEU LEU D . n D 1 133 SER 133 133 133 SER SER D . n D 1 134 PHE 134 134 134 PHE PHE D . n D 1 135 THR 135 135 135 THR THR D . n D 1 136 ALA 136 136 136 ALA ALA D . n D 1 137 ILE 137 137 ? ? ? D . n # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.13_2998: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6TSV _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6TSV _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6TSV _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? ? ? ? ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.174 ? 32712 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 17.556 ? 14112 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.080 ? 3648 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.006 ? 4368 ? f_plane_restr ? ? # _struct.entry_id 6TSV _struct.title 'Tail of empty GTA particle computed with helical refinement, C6 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6TSV _struct_keywords.text ;"helical refinement", "gene transfer agent", "bacteriophage", "tail", VIRUS ; _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D5ATZ7_RHOCB _struct_ref.pdbx_db_accession D5ATZ7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAAQNGKDLLIKLDLTGSGQFETIAGLRATRISFNAETVDVTSLESQGGWRELLGGAGVRSASISGAGVFKDADTDERAR QIFFDGEVPEFQVIIPDFGIVQGPFMITSIDYAGSHNGEASYELAMASAGALSFTAI ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6TSV B 1 ? 137 ? D5ATZ7 1 ? 137 ? 1 137 2 1 6TSV A 1 ? 137 ? D5ATZ7 1 ? 137 ? 1 137 3 1 6TSV C 1 ? 137 ? D5ATZ7 1 ? 137 ? 1 137 4 1 6TSV D 1 ? 137 ? D5ATZ7 1 ? 137 ? 1 137 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details 'computed with helical refinement using RELION' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 0.000000 -0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 -0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.500000 -0.866025 -0.000000 185.86688 0.866025 0.500000 -0.000000 -49.80288 -0.000000 0.000000 1.000000 -0.00000 3 'point symmetry operation' ? ? -0.500000 -0.866025 -0.000000 321.93088 0.866025 -0.500000 -0.000000 86.26112 -0.000000 0.000000 1.000000 -0.00000 4 'point symmetry operation' ? ? -1.000000 -0.000000 0.000000 272.12800 -0.000000 -1.000000 0.000000 272.12800 0.000000 0.000000 1.000000 -0.00000 5 'point symmetry operation' ? ? -0.500000 0.866025 -0.000000 86.26112 -0.866025 -0.500000 0.000000 321.93088 -0.000000 -0.000000 1.000000 -0.00000 6 'point symmetry operation' ? ? 0.500000 0.866025 -0.000000 -49.80288 -0.866025 0.500000 0.000000 185.86688 -0.000000 -0.000000 1.000000 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 5 ? LEU A 9 ? ASN B 5 LEU B 9 5 ? 5 HELX_P HELX_P2 AA2 ALA A 73 ? ASP A 85 ? ALA B 73 ASP B 85 1 ? 13 HELX_P HELX_P3 AA3 ASN B 5 ? LEU B 9 ? ASN A 5 LEU A 9 5 ? 5 HELX_P HELX_P4 AA4 ALA B 73 ? ASP B 85 ? ALA A 73 ASP A 85 1 ? 13 HELX_P HELX_P5 AA5 ASN C 5 ? LEU C 9 ? ASN C 5 LEU C 9 5 ? 5 HELX_P HELX_P6 AA6 ALA C 73 ? ASP C 85 ? ALA C 73 ASP C 85 1 ? 13 HELX_P HELX_P7 AA7 ASN D 5 ? LEU D 9 ? ASN D 5 LEU D 9 5 ? 5 HELX_P HELX_P8 AA8 ALA D 73 ? ASP D 85 ? ALA D 73 ASP D 85 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 4 ? AA3 ? 7 ? AA4 ? 4 ? AA5 ? 7 ? AA6 ? 4 ? AA7 ? 7 ? AA8 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA5 6 7 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA7 4 5 ? anti-parallel AA7 5 6 ? anti-parallel AA7 6 7 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 21 ? THR A 23 ? PHE B 21 THR B 23 AA1 2 LEU A 10 ? ASP A 14 ? LEU B 10 ASP B 14 AA1 3 GLU A 90 ? ILE A 95 ? GLU B 90 ILE B 95 AA1 4 GLY A 103 ? ALA A 113 ? GLY B 103 ALA B 113 AA1 5 SER A 121 ? SER A 128 ? SER B 121 SER B 128 AA1 6 SER A 61 ? VAL A 69 ? SER B 61 VAL B 69 AA1 7 LEU A 27 ? ASN A 35 ? LEU B 27 ASN B 35 AA2 1 PHE A 21 ? THR A 23 ? PHE B 21 THR B 23 AA2 2 LEU A 10 ? ASP A 14 ? LEU B 10 ASP B 14 AA2 3 GLU A 90 ? ILE A 95 ? GLU B 90 ILE B 95 AA2 4 GLY A 99 ? ILE A 100 ? GLY B 99 ILE B 100 AA3 1 PHE B 21 ? THR B 23 ? PHE A 21 THR A 23 AA3 2 LEU B 10 ? ASP B 14 ? LEU A 10 ASP A 14 AA3 3 GLU B 90 ? ILE B 95 ? GLU A 90 ILE A 95 AA3 4 GLY B 103 ? ALA B 113 ? GLY A 103 ALA A 113 AA3 5 SER B 121 ? SER B 128 ? SER A 121 SER A 128 AA3 6 SER B 61 ? VAL B 69 ? SER A 61 VAL A 69 AA3 7 LEU B 27 ? ASN B 35 ? LEU A 27 ASN A 35 AA4 1 PHE B 21 ? THR B 23 ? PHE A 21 THR A 23 AA4 2 LEU B 10 ? ASP B 14 ? LEU A 10 ASP A 14 AA4 3 GLU B 90 ? ILE B 95 ? GLU A 90 ILE A 95 AA4 4 GLY B 99 ? ILE B 100 ? GLY A 99 ILE A 100 AA5 1 PHE C 21 ? THR C 23 ? PHE C 21 THR C 23 AA5 2 LEU C 10 ? ASP C 14 ? LEU C 10 ASP C 14 AA5 3 GLU C 90 ? ILE C 95 ? GLU C 90 ILE C 95 AA5 4 GLY C 103 ? ALA C 113 ? GLY C 103 ALA C 113 AA5 5 SER C 121 ? SER C 128 ? SER C 121 SER C 128 AA5 6 SER C 61 ? VAL C 69 ? SER C 61 VAL C 69 AA5 7 LEU C 27 ? ASN C 35 ? LEU C 27 ASN C 35 AA6 1 PHE C 21 ? THR C 23 ? PHE C 21 THR C 23 AA6 2 LEU C 10 ? ASP C 14 ? LEU C 10 ASP C 14 AA6 3 GLU C 90 ? ILE C 95 ? GLU C 90 ILE C 95 AA6 4 GLY C 99 ? ILE C 100 ? GLY C 99 ILE C 100 AA7 1 PHE D 21 ? THR D 23 ? PHE D 21 THR D 23 AA7 2 LEU D 10 ? ASP D 14 ? LEU D 10 ASP D 14 AA7 3 GLU D 90 ? ILE D 95 ? GLU D 90 ILE D 95 AA7 4 GLY D 103 ? ALA D 113 ? GLY D 103 ALA D 113 AA7 5 SER D 121 ? SER D 128 ? SER D 121 SER D 128 AA7 6 SER D 61 ? VAL D 69 ? SER D 61 VAL D 69 AA7 7 LEU D 27 ? ASN D 35 ? LEU D 27 ASN D 35 AA8 1 PHE D 21 ? THR D 23 ? PHE D 21 THR D 23 AA8 2 LEU D 10 ? ASP D 14 ? LEU D 10 ASP D 14 AA8 3 GLU D 90 ? ILE D 95 ? GLU D 90 ILE D 95 AA8 4 GLY D 99 ? ILE D 100 ? GLY D 99 ILE D 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU A 22 ? O GLU B 22 N LEU A 13 ? N LEU B 13 AA1 2 3 N LYS A 12 ? N LYS B 12 O GLN A 92 ? O GLN B 92 AA1 3 4 N PHE A 91 ? N PHE B 91 O GLY A 103 ? O GLY B 103 AA1 4 5 N ALA A 113 ? N ALA B 113 O SER A 121 ? O SER B 121 AA1 5 6 O LEU A 124 ? O LEU B 124 N GLY A 66 ? N GLY B 66 AA1 6 7 O SER A 63 ? O SER B 63 N SER A 33 ? N SER B 33 AA2 1 2 O GLU A 22 ? O GLU B 22 N LEU A 13 ? N LEU B 13 AA2 2 3 N LYS A 12 ? N LYS B 12 O GLN A 92 ? O GLN B 92 AA2 3 4 N ILE A 95 ? N ILE B 95 O GLY A 99 ? O GLY B 99 AA3 1 2 O GLU B 22 ? O GLU A 22 N LEU B 13 ? N LEU A 13 AA3 2 3 N LYS B 12 ? N LYS A 12 O GLN B 92 ? O GLN A 92 AA3 3 4 N PHE B 91 ? N PHE A 91 O GLY B 103 ? O GLY A 103 AA3 4 5 N ALA B 113 ? N ALA A 113 O SER B 121 ? O SER A 121 AA3 5 6 O LEU B 124 ? O LEU A 124 N GLY B 66 ? N GLY A 66 AA3 6 7 O SER B 63 ? O SER A 63 N SER B 33 ? N SER A 33 AA4 1 2 O GLU B 22 ? O GLU A 22 N LEU B 13 ? N LEU A 13 AA4 2 3 N LYS B 12 ? N LYS A 12 O GLN B 92 ? O GLN A 92 AA4 3 4 N ILE B 95 ? N ILE A 95 O GLY B 99 ? O GLY A 99 AA5 1 2 O GLU C 22 ? O GLU C 22 N LEU C 13 ? N LEU C 13 AA5 2 3 N LYS C 12 ? N LYS C 12 O GLN C 92 ? O GLN C 92 AA5 3 4 N PHE C 91 ? N PHE C 91 O GLY C 103 ? O GLY C 103 AA5 4 5 N ALA C 113 ? N ALA C 113 O SER C 121 ? O SER C 121 AA5 5 6 O LEU C 124 ? O LEU C 124 N GLY C 66 ? N GLY C 66 AA5 6 7 O SER C 63 ? O SER C 63 N SER C 33 ? N SER C 33 AA6 1 2 O GLU C 22 ? O GLU C 22 N LEU C 13 ? N LEU C 13 AA6 2 3 N LYS C 12 ? N LYS C 12 O GLN C 92 ? O GLN C 92 AA6 3 4 N ILE C 95 ? N ILE C 95 O GLY C 99 ? O GLY C 99 AA7 1 2 O GLU D 22 ? O GLU D 22 N LEU D 13 ? N LEU D 13 AA7 2 3 N LYS D 12 ? N LYS D 12 O GLN D 92 ? O GLN D 92 AA7 3 4 N PHE D 91 ? N PHE D 91 O GLY D 103 ? O GLY D 103 AA7 4 5 N ALA D 113 ? N ALA D 113 O SER D 121 ? O SER D 121 AA7 5 6 O LEU D 124 ? O LEU D 124 N GLY D 66 ? N GLY D 66 AA7 6 7 O SER D 63 ? O SER D 63 N SER D 33 ? N SER D 33 AA8 1 2 O GLU D 22 ? O GLU D 22 N LEU D 13 ? N LEU D 13 AA8 2 3 N LYS D 12 ? N LYS D 12 O GLN D 92 ? O GLN D 92 AA8 3 4 N ILE D 95 ? N ILE D 95 O GLY D 99 ? O GLY D 99 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA B 25 ? ? -164.12 -164.12 2 1 SER B 46 ? ? -144.20 28.49 3 1 GLN B 102 ? ? 61.26 72.62 4 1 ALA A 25 ? ? -164.10 -164.09 5 1 SER A 46 ? ? -144.23 28.49 6 1 GLN A 102 ? ? 61.21 72.64 7 1 ALA C 25 ? ? -164.05 -164.14 8 1 SER C 46 ? ? -144.21 28.52 9 1 GLN C 102 ? ? 61.24 72.58 10 1 ALA D 25 ? ? -164.04 -164.10 11 1 SER D 46 ? ? -144.21 28.44 12 1 GLN D 102 ? ? 61.34 72.55 # _em_3d_fitting.entry_id 6TSV _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6TSV _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 49821 _em_3d_reconstruction.resolution 3.78 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details 'G-buffer, doi: 10.1016/0003-9861(77)90508-2' _em_buffer.pH 7.8 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'tubular structure interconnecting head to baseplate (host recognition device), partial' _em_entity_assembly.name 'Rhodobacter capsulatus DE442 gene transfer agent tail tube' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6TSV _em_image_scans.id 1 _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6TSV _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max -3000 _em_imaging.nominal_defocus_min -1000 _em_imaging.nominal_magnification 75000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.method ? _em_sample_support.film_material ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty YES _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 293.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6TSV _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6TSV _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 1 ? A MET 1 2 1 Y 1 B ALA 2 ? A ALA 2 3 1 Y 1 B ILE 137 ? A ILE 137 4 1 Y 1 A MET 1 ? B MET 1 5 1 Y 1 A ALA 2 ? B ALA 2 6 1 Y 1 A ILE 137 ? B ILE 137 7 1 Y 1 C MET 1 ? C MET 1 8 1 Y 1 C ALA 2 ? C ALA 2 9 1 Y 1 C ILE 137 ? C ILE 137 10 1 Y 1 D MET 1 ? D MET 1 11 1 Y 1 D ALA 2 ? D ALA 2 12 1 Y 1 D ILE 137 ? D ILE 137 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 10 mM ? Tris 1 2 1 mM NaCl ? 1 3 1 mM MgCl2 ? 1 4 1 mM CaCl2 ? 1 5 0.01 mg/ml ? 'Bovine serum albumin' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # loop_ _em_entity_assembly_molwt.entity_assembly_id _em_entity_assembly_molwt.id _em_entity_assembly_molwt.experimental_flag _em_entity_assembly_molwt.units _em_entity_assembly_molwt.value 1 1 NO MEGADALTONS 0.35 1 2 NO MEGADALTONS 0.35 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 1415160 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Rhodobacter capsulatus DE442' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 24.4 _em_helical_entity.axial_rise_per_subunit 38.4 _em_helical_entity.axial_symmetry C6 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 42.75 _em_image_recording.average_exposure_time 1 _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 3114 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 49821 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 2.1 1 ? ? 2 'IMAGE ACQUISITION' ? EPU 2.1 ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? RELION 2.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot 0.9 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 2.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? RELION 2.1 1 ? ? 12 RECONSTRUCTION ? RELION 2.1 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.16 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 20 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.id 1 _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.ncbi_tax_id 1061 _em_virus_natural_host.organism 'Rhodobacter capsulatus' _em_virus_natural_host.strain ? # _em_virus_shell.id 1 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.diameter 380 _em_virus_shell.name 'HK97-like oblate capsid' _em_virus_shell.triangulation 3 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education (Czech Republic)' 'Czech Republic' LQ1601 1 'European Regional Development Fund' 'Czech Republic' CZ.1.05/1.1.00/02.0070 2 'Ministry of Education (Czech Republic)' 'Czech Republic' LM2011033 3 'Czech Science Foundation' 'Czech Republic' 15-21631Y 4 'Czech Science Foundation' 'Czech Republic' 18-17810S 5 'European Molecular Biology Organization' 'Czech Republic' 3041 6 'Grant Agency of the Czech Republic' 'Czech Republic' 18-13064S 7 # _atom_sites.entry_id 6TSV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_