HEADER OXIDOREDUCTASE 29-DEC-19 6TTM TITLE HYOSCYAMINE 6-HYDROXYLASE IN COMPLEX WITH N-OXALYLGLYCINE AND TITLE 2 HYOSCYAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYOSCYAMINE 6 BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SNA - PURIFICATION TAG FRAGMENT REMAINED AFTER TEV COMPND 6 PROTEASE CLEAVAGE. N-TERMINAL, C-TERMINAL 3-RESIDUES AND TWO LOOPS COMPND 7 ARE DISORDERED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DATURA METEL; SOURCE 3 ORGANISM_COMMON: HINDU DATURA; SOURCE 4 ORGANISM_TAXID: 35625; SOURCE 5 GENE: H6H; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS JELLY-ROLL, NON-HEME, 2-OXOGLUTARATE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KLUZA,K.KURPIEWSKA,B.MRUGALA,P.J.POREBSKI,E.NIEDZIALKOWSKA,W.MINOR, AUTHOR 2 T.BOROWSKI REVDAT 4 24-JAN-24 6TTM 1 LINK REVDAT 3 15-APR-20 6TTM 1 JRNL REVDAT 2 25-MAR-20 6TTM 1 JRNL REVDAT 1 18-MAR-20 6TTM 0 JRNL AUTH A.KLUZA,Z.WOJDYLA,B.MRUGALA,K.KURPIEWSKA,P.J.POREBSKI, JRNL AUTH 2 E.NIEDZIALKOWSKA,W.MINOR,M.S.WEISS,T.BOROWSKI JRNL TITL REGIOSELECTIVITY OF HYOSCYAMINE 6 BETA-HYDROXYLASE-CATALYSED JRNL TITL 2 HYDROXYLATION AS REVEALED BY HIGH-RESOLUTION STRUCTURAL JRNL TITL 3 INFORMATION AND QM/MM CALCULATIONS. JRNL REF DALTON TRANS V. 49 4454 2020 JRNL REFN ESSN 1477-9234 JRNL PMID 32182320 JRNL DOI 10.1039/D0DT00302F REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 29374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2400 - 4.2500 0.95 2645 144 0.1518 0.1776 REMARK 3 2 4.2500 - 3.3700 0.98 2600 124 0.1439 0.1923 REMARK 3 3 3.3700 - 2.9400 0.97 2550 139 0.1663 0.2277 REMARK 3 4 2.9400 - 2.6800 0.98 2557 148 0.1614 0.1956 REMARK 3 5 2.6800 - 2.4800 0.98 2560 140 0.1490 0.1768 REMARK 3 6 2.4800 - 2.3400 0.97 2528 118 0.1555 0.2005 REMARK 3 7 2.3400 - 2.2200 0.99 2569 131 0.1546 0.2177 REMARK 3 8 2.2200 - 2.1200 0.99 2561 149 0.1786 0.2068 REMARK 3 9 2.1200 - 2.0400 0.98 2525 140 0.1910 0.2024 REMARK 3 10 2.0400 - 1.9700 0.95 2407 154 0.2027 0.2749 REMARK 3 11 1.9700 - 1.9100 0.91 2334 151 0.2329 0.2539 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7030 4.1365 6.9666 REMARK 3 T TENSOR REMARK 3 T11: 0.2812 T22: 0.3097 REMARK 3 T33: 0.2761 T12: 0.0211 REMARK 3 T13: -0.0076 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.2922 L22: 1.2702 REMARK 3 L33: 2.0414 L12: -0.2991 REMARK 3 L13: 0.4482 L23: -0.3158 REMARK 3 S TENSOR REMARK 3 S11: -0.1238 S12: -0.0758 S13: 0.0023 REMARK 3 S21: 0.1089 S22: 0.1031 S23: 0.1324 REMARK 3 S31: 0.1349 S32: -0.0251 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1156 2.3992 5.2658 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.2366 REMARK 3 T33: 0.2212 T12: -0.0153 REMARK 3 T13: 0.0032 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 3.4151 L22: 1.7573 REMARK 3 L33: 2.6431 L12: -0.6070 REMARK 3 L13: -0.4194 L23: 0.2171 REMARK 3 S TENSOR REMARK 3 S11: -0.1293 S12: 0.1110 S13: -0.0234 REMARK 3 S21: 0.0308 S22: 0.0832 S23: 0.0863 REMARK 3 S31: 0.2769 S32: -0.1212 S33: -0.0224 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8023 -5.8607 1.5306 REMARK 3 T TENSOR REMARK 3 T11: 0.4154 T22: 0.8549 REMARK 3 T33: 0.6156 T12: -0.3335 REMARK 3 T13: 0.0025 T23: -0.0676 REMARK 3 L TENSOR REMARK 3 L11: 0.7579 L22: 1.6743 REMARK 3 L33: 1.9272 L12: 0.4275 REMARK 3 L13: -1.1485 L23: -0.5294 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: 0.3712 S13: -0.4312 REMARK 3 S21: -0.2631 S22: -0.0755 S23: 0.8681 REMARK 3 S31: 0.5533 S32: -1.5717 S33: -0.4694 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29418 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : 0.34400 REMARK 200 FOR SHELL : 1.971 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 1GP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SAMPLE: 20 MG/ML H6H IN WATER, REMARK 280 100 MM N-OXALYLGLYCINE, 10 MM HYOSCYAMINE. MOTHER LIQUOR: 100 MM REMARK 280 STRONTIUM CHLORIDE, 180 MM SODIUM FORMATE, 21% PEG 3350., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.26800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.31500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.31500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.26800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 TRP A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 ASN A 11 REMARK 465 ASN A 12 REMARK 465 VAL A 13 REMARK 465 SER A 14 REMARK 465 GLU A 15 REMARK 465 SER A 16 REMARK 465 PHE A 17 REMARK 465 ILE A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 GLU A 22 REMARK 465 LYS A 23 REMARK 465 ARG A 24 REMARK 465 ALA A 25 REMARK 465 GLU A 26 REMARK 465 LYS A 27 REMARK 465 ASP A 28 REMARK 465 VAL A 29 REMARK 465 ALA A 30 REMARK 465 LEU A 31 REMARK 465 GLY A 32 REMARK 465 CYS A 121 REMARK 465 ASN A 122 REMARK 465 GLU A 123 REMARK 465 GLU A 124 REMARK 465 PHE A 125 REMARK 465 LEU A 126 REMARK 465 PRO A 208 REMARK 465 SER A 209 REMARK 465 THR A 210 REMARK 465 THR A 211 REMARK 465 ILE A 212 REMARK 465 GLY A 213 REMARK 465 SER A 214 REMARK 465 PHE A 345 REMARK 465 PRO A 346 REMARK 465 ASN A 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 ASP A 34 CG OD1 OD2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 127 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 GLN A 308 CG CD OE1 NE2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 ASN A 310 CG OD1 ND2 REMARK 470 GLN A 344 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 408 O HOH A 586 1.94 REMARK 500 OE1 GLU A 78 O HOH A 501 1.98 REMARK 500 UNK UNX A 408 O HOH A 543 2.05 REMARK 500 O HOH A 543 O HOH A 586 2.06 REMARK 500 UNK UNX A 408 O HOH A 576 2.11 REMARK 500 O HOH A 502 O HOH A 600 2.18 REMARK 500 O HOH A 563 O HOH A 649 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 189 -149.13 -163.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 704 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 11.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 407 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 67 O REMARK 620 2 GLU A 92 OE1 52.7 REMARK 620 3 GLU A 92 OE2 51.3 3.2 REMARK 620 4 GLN A 95 OE1 48.5 4.4 5.0 REMARK 620 5 GLY A 98 O 49.6 4.7 6.4 2.3 REMARK 620 6 HOH A 595 O 45.9 6.9 6.4 2.7 4.6 REMARK 620 7 HOH A 637 O 46.6 6.6 4.7 4.1 6.5 3.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 403 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 217 NE2 REMARK 620 2 ASP A 219 OD1 95.0 REMARK 620 3 HIS A 274 NE2 87.5 98.3 REMARK 620 4 OGA A 404 O2 94.3 93.6 167.8 REMARK 620 5 OGA A 404 O2' 91.7 171.4 87.5 80.4 REMARK 620 6 HOH A 512 O 176.2 88.7 91.4 86.0 84.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HYO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TTO RELATED DB: PDB REMARK 900 TRUNCATED VERSION OF H6H IN COMPLEX WITH CO-SUBSTRATE REMARK 900 RELATED ID: 6TTN RELATED DB: PDB REMARK 900 TRUNCATED VERSION OF H6H IN COMPLEX WITH N-OXALYLGLYCINE AND REMARK 900 HYOSCYAMINE DBREF 6TTM A 1 347 UNP Q6EZB3 Q6EZB3_DATME 1 347 SEQADV 6TTM SER A -2 UNP Q6EZB3 EXPRESSION TAG SEQADV 6TTM ASN A -1 UNP Q6EZB3 EXPRESSION TAG SEQADV 6TTM ALA A 0 UNP Q6EZB3 EXPRESSION TAG SEQRES 1 A 350 SER ASN ALA MET ALA THR LEU VAL SER ASN TRP SER THR SEQRES 2 A 350 ASN ASN VAL SER GLU SER PHE ILE ALA PRO LEU GLU LYS SEQRES 3 A 350 ARG ALA GLU LYS ASP VAL ALA LEU GLY ASN ASP VAL PRO SEQRES 4 A 350 ILE ILE ASP LEU GLN GLN ASP HIS LEU LEU ILE VAL GLN SEQRES 5 A 350 GLN ILE THR LYS ALA CYS GLN ASP PHE GLY LEU PHE GLN SEQRES 6 A 350 VAL ILE ASN HIS GLY VAL PRO GLU LYS LEU MET VAL GLU SEQRES 7 A 350 ALA MET GLU VAL TYR LYS GLU PHE PHE ALA LEU PRO ALA SEQRES 8 A 350 GLU GLU LYS GLU LYS PHE GLN PRO LYS GLY GLU PRO ALA SEQRES 9 A 350 LYS PHE GLU LEU PRO LEU GLU GLN LYS ALA LYS LEU TYR SEQRES 10 A 350 VAL GLU GLY GLU ARG ARG CYS ASN GLU GLU PHE LEU TYR SEQRES 11 A 350 TRP LYS ASP THR LEU ALA HIS GLY CYS TYR PRO LEU HIS SEQRES 12 A 350 GLU GLU LEU LEU ASN SER TRP PRO GLU LYS PRO PRO THR SEQRES 13 A 350 TYR ARG ASP VAL ILE ALA LYS TYR SER VAL GLU VAL ARG SEQRES 14 A 350 LYS LEU THR MET ARG ILE LEU ASP TYR ILE CYS GLU GLY SEQRES 15 A 350 LEU GLY LEU LYS LEU GLY TYR PHE ASP ASN GLU LEU THR SEQRES 16 A 350 GLN ILE GLN MET LEU LEU ALA ASN TYR TYR PRO SER CYS SEQRES 17 A 350 PRO ASP PRO SER THR THR ILE GLY SER GLY GLY HIS TYR SEQRES 18 A 350 ASP GLY ASN LEU ILE THR LEU LEU GLN GLN ASP LEU VAL SEQRES 19 A 350 GLY LEU GLN GLN LEU ILE VAL LYS ASP ASP LYS TRP ILE SEQRES 20 A 350 ALA VAL GLU PRO ILE PRO THR ALA PHE VAL VAL ASN LEU SEQRES 21 A 350 GLY LEU THR LEU LYS VAL MET SER ASN GLU LYS PHE GLU SEQRES 22 A 350 GLY SER ILE HIS ARG VAL VAL THR HIS PRO ILE ARG ASN SEQRES 23 A 350 ARG ILE SER ILE GLY THR LEU ILE GLY PRO ASP TYR SER SEQRES 24 A 350 CYS THR ILE GLU PRO ILE LYS GLU LEU ILE SER GLN GLU SEQRES 25 A 350 ASN PRO PRO LEU TYR LYS PRO TYR PRO TYR ALA GLU PHE SEQRES 26 A 350 ALA GLU ILE TYR LEU SER ASP LYS SER ASP TYR ASP ALA SEQRES 27 A 350 GLY VAL LYS PRO TYR LYS ILE ASN GLN PHE PRO ASN HET PEG A 401 14 HET HYO A 402 21 HET NI A 403 1 HET OGA A 404 10 HET EDO A 405 4 HET EDO A 406 4 HET SR A 407 1 HET UNX A 408 1 HET UNX A 409 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM HYO [(1S,5R)-8-METHYL-8-AZABICYCLO[3.2.1]OCTAN-3-YL] (2S)- HETNAM 2 HYO 3-HYDROXY-2-PHENYLPROPANOATE HETNAM NI NICKEL (II) ION HETNAM OGA N-OXALYLGLYCINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SR STRONTIUM ION HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PEG C4 H10 O3 FORMUL 3 HYO C17 H23 N O3 FORMUL 4 NI NI 2+ FORMUL 5 OGA C4 H5 N O5 FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 SR SR 2+ FORMUL 9 UNX 2(X) FORMUL 11 HOH *205(H2 O) HELIX 1 AA1 ASP A 43 PHE A 58 1 16 HELIX 2 AA2 PRO A 69 ALA A 85 1 17 HELIX 3 AA3 PRO A 87 GLU A 92 1 6 HELIX 4 AA4 LYS A 93 GLU A 99 5 7 HELIX 5 AA5 HIS A 140 ASN A 145 1 6 HELIX 6 AA6 THR A 153 GLY A 181 1 29 HELIX 7 AA7 ASN A 189 GLN A 193 5 5 HELIX 8 AA8 GLY A 258 SER A 265 1 8 HELIX 9 AA9 ILE A 302 ILE A 306 5 5 HELIX 10 AB1 TYR A 319 ASP A 329 1 11 HELIX 11 AB2 VAL A 337 LYS A 341 5 5 SHEET 1 AA1 9 ILE A 37 ASP A 39 0 SHEET 2 AA1 9 LEU A 60 ILE A 64 1 O GLN A 62 N ILE A 38 SHEET 3 AA1 9 PHE A 253 LEU A 257 -1 O VAL A 255 N PHE A 61 SHEET 4 AA1 9 ILE A 223 GLN A 228 -1 N LEU A 226 O VAL A 254 SHEET 5 AA1 9 ARG A 284 GLY A 292 -1 O THR A 289 N LEU A 225 SHEET 6 AA1 9 ILE A 194 TYR A 202 -1 N MET A 196 O LEU A 290 SHEET 7 AA1 9 ASP A 130 GLY A 135 -1 N HIS A 134 O LEU A 197 SHEET 8 AA1 9 LYS A 112 VAL A 115 -1 N TYR A 114 O THR A 131 SHEET 9 AA1 9 ALA A 101 LYS A 102 1 N ALA A 101 O LEU A 113 SHEET 1 AA2 4 HIS A 217 TYR A 218 0 SHEET 2 AA2 4 ILE A 273 VAL A 276 -1 O HIS A 274 N HIS A 217 SHEET 3 AA2 4 LEU A 233 ILE A 237 -1 N LEU A 236 O ILE A 273 SHEET 4 AA2 4 LYS A 242 ALA A 245 -1 O LYS A 242 N ILE A 237 SHEET 1 AA3 2 THR A 298 ILE A 299 0 SHEET 2 AA3 2 TYR A 317 PRO A 318 -1 O TYR A 317 N ILE A 299 LINK O GLY A 67 SR SR A 407 1555 2555 2.58 LINK OE1 GLU A 92 SR SR A 407 1555 1555 2.79 LINK OE2 GLU A 92 SR SR A 407 1555 1555 2.56 LINK OE1 GLN A 95 SR SR A 407 1555 1555 2.56 LINK O GLY A 98 SR SR A 407 1555 1555 2.39 LINK NE2 HIS A 217 NI NI A 403 1555 1555 2.12 LINK OD1 ASP A 219 NI NI A 403 1555 1555 2.09 LINK NE2 HIS A 274 NI NI A 403 1555 1555 2.01 LINK NI NI A 403 O2 OGA A 404 1555 1555 2.08 LINK NI NI A 403 O2' OGA A 404 1555 1555 2.16 LINK NI NI A 403 O HOH A 512 1555 1555 2.18 LINK SR SR A 407 O HOH A 595 1555 2554 2.57 LINK SR SR A 407 O HOH A 637 1555 1555 2.62 CISPEP 1 LEU A 105 PRO A 106 0 -1.35 CISPEP 2 TYR A 137 PRO A 138 0 -5.98 CISPEP 3 LYS A 150 PRO A 151 0 1.35 CISPEP 4 LYS A 150 PRO A 151 0 -3.80 SITE 1 AC1 6 GLN A 56 ASP A 57 GLU A 267 LYS A 268 SITE 2 AC1 6 GLU A 270 HOH A 525 SITE 1 AC2 12 PHE A 103 LEU A 107 GLU A 116 MET A 196 SITE 2 AC2 12 LEU A 198 GLY A 220 ASN A 221 LEU A 290 SITE 3 AC2 12 TYR A 319 TYR A 326 OGA A 404 HOH A 509 SITE 1 AC3 5 HIS A 217 ASP A 219 HIS A 274 OGA A 404 SITE 2 AC3 5 HOH A 512 SITE 1 AC4 13 ASN A 200 TYR A 202 HIS A 217 ASP A 219 SITE 2 AC4 13 HIS A 274 VAL A 276 ARG A 284 SER A 286 SITE 3 AC4 13 HYO A 402 NI A 403 HOH A 512 HOH A 526 SITE 4 AC4 13 HOH A 579 SITE 1 AC5 7 LYS A 81 ASP A 229 LEU A 230 ARG A 282 SITE 2 AC5 7 ASN A 283 ILE A 285 HOH A 578 SITE 1 AC6 3 PRO A 69 GLU A 75 GLU A 99 SITE 1 AC7 7 GLY A 67 GLU A 92 GLN A 95 GLY A 98 SITE 2 AC7 7 HOH A 595 HOH A 618 HOH A 637 CRYST1 68.536 70.780 78.630 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014591 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012718 0.00000