HEADER OXIDOREDUCTASE 29-DEC-19 6TTO TITLE N-TERMINALLY TRUNCATED HYOSCYAMINE 6-HYDROXYLASE (TH6H) IN COMPLEX TITLE 2 WITH 2-OXOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYOSCYAMINE 6 BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SNA - FRAGMENT OF PURIFICATION TAG REMAINED AFTER TEV COMPND 6 PROTEASE CLEAVAGE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DATURA METEL; SOURCE 3 ORGANISM_COMMON: HINDU DATURA; SOURCE 4 ORGANISM_TAXID: 35625; SOURCE 5 GENE: H6H; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS JELLY-ROLL, NON-HEME, 2-OXOGLUTARATE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KLUZA,B.MRUGALA,P.J.POREBSKI,K.KURPIEWSKA,E.NIEDZIALKOWSKA, AUTHOR 2 M.S.WEISS,T.BOROWSKI REVDAT 4 24-JAN-24 6TTO 1 LINK REVDAT 3 15-APR-20 6TTO 1 JRNL REVDAT 2 25-MAR-20 6TTO 1 JRNL REVDAT 1 18-MAR-20 6TTO 0 JRNL AUTH A.KLUZA,Z.WOJDYLA,B.MRUGALA,K.KURPIEWSKA,P.J.POREBSKI, JRNL AUTH 2 E.NIEDZIALKOWSKA,W.MINOR,M.S.WEISS,T.BOROWSKI JRNL TITL REGIOSELECTIVITY OF HYOSCYAMINE 6 BETA-HYDROXYLASE-CATALYSED JRNL TITL 2 HYDROXYLATION AS REVEALED BY HIGH-RESOLUTION STRUCTURAL JRNL TITL 3 INFORMATION AND QM/MM CALCULATIONS. JRNL REF DALTON TRANS V. 49 4454 2020 JRNL REFN ESSN 1477-9234 JRNL PMID 32182320 JRNL DOI 10.1039/D0DT00302F REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 81462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.580 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7000 - 3.2200 1.00 5618 149 0.1477 0.1609 REMARK 3 2 3.2200 - 2.5600 1.00 5394 143 0.1315 0.1586 REMARK 3 3 2.5600 - 2.2300 1.00 5341 141 0.1105 0.1454 REMARK 3 4 2.2300 - 2.0300 1.00 5314 141 0.1047 0.1194 REMARK 3 5 2.0300 - 1.8800 1.00 5320 141 0.1046 0.1268 REMARK 3 6 1.8800 - 1.7700 1.00 5269 139 0.1094 0.1443 REMARK 3 7 1.7700 - 1.6800 1.00 5251 139 0.1170 0.1817 REMARK 3 8 1.6800 - 1.6100 1.00 5283 140 0.1271 0.1686 REMARK 3 9 1.6100 - 1.5500 1.00 5262 139 0.1343 0.1584 REMARK 3 10 1.5500 - 1.5000 1.00 5237 139 0.1484 0.1675 REMARK 3 11 1.5000 - 1.4500 1.00 5243 138 0.1726 0.2228 REMARK 3 12 1.4500 - 1.4100 1.00 5238 139 0.1974 0.2340 REMARK 3 13 1.4100 - 1.3700 1.00 5186 137 0.2262 0.2849 REMARK 3 14 1.3700 - 1.3400 1.00 5223 138 0.2479 0.3244 REMARK 3 15 1.3400 - 1.3100 0.99 5182 138 0.2845 0.3108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.159 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.752 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2895 REMARK 3 ANGLE : 1.059 3955 REMARK 3 CHIRALITY : 0.083 425 REMARK 3 PLANARITY : 0.007 527 REMARK 3 DIHEDRAL : 16.469 1129 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 43.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6TTN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SAMPLE: 37.5 MG/ML TH6H IN REMARK 280 WATER. MOTHER LIQUOR: 100 MM DISODIUM 2-OXOGLUTARATE, 100 MM REMARK 280 STRONTIUM CHLORIDE, 200 MM SODIUM FORMATE, 25% PEG 3350. 1.3 UL REMARK 280 OF PROTEIN SOLUTION, 1 UL OF MOTHER LIQUOR, 0.3 UL OF 100X REMARK 280 DILUTED SEEDS STOCK OF TH6H:NOG:HYO CRYSTALS., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.94800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.21850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.90400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.21850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.94800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.90400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 ALA A 33 REMARK 465 ASP A 34 REMARK 465 PRO A 346 REMARK 465 ASN A 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 PHE A 125 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 210 OG1 CG2 REMARK 470 LYS A 239 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 171 O HOH A 502 1.36 REMARK 500 HO1 EDO A 407 O HOH A 505 1.43 REMARK 500 HD21 ASN A 200 O HOH A 503 1.58 REMARK 500 O ILE A 306 O HOH A 501 1.69 REMARK 500 O HOH A 569 O HOH A 778 1.72 REMARK 500 NH2 ARG A 171 O HOH A 502 1.76 REMARK 500 ND2 ASN A 200 O HOH A 503 1.77 REMARK 500 OE1 GLU A 149 O HOH A 504 1.80 REMARK 500 O1 EDO A 407 O HOH A 505 1.80 REMARK 500 OH TYR A 295 O HOH A 506 1.89 REMARK 500 O HOH A 506 O HOH A 520 1.90 REMARK 500 OE1 GLU A 324 O HOH A 507 1.92 REMARK 500 O HOH A 792 O HOH A 867 1.95 REMARK 500 NH2 ARG A 171 O HOH A 508 1.99 REMARK 500 OE2 GLU A 247 O HOH A 509 2.00 REMARK 500 O HOH A 556 O HOH A 619 2.00 REMARK 500 O HOH A 748 O HOH A 769 2.00 REMARK 500 OD2 ASP A 294 O HOH A 510 2.01 REMARK 500 O HOH A 637 O HOH A 763 2.06 REMARK 500 O HOH A 676 O HOH A 777 2.06 REMARK 500 O HOH A 845 O HOH A 872 2.07 REMARK 500 O2 FMT A 412 O HOH A 511 2.09 REMARK 500 O HOH A 503 O HOH A 544 2.15 REMARK 500 O HOH A 794 O HOH A 860 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 294 O HOH A 889 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 124 -78.39 -129.56 REMARK 500 ASN A 189 -156.21 -167.00 REMARK 500 ASN A 189 -154.96 -167.00 REMARK 500 ASN A 221 -164.30 -79.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 889 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 890 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 891 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 892 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 893 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 894 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 895 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 896 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 897 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 898 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A 899 DISTANCE = 8.71 ANGSTROMS REMARK 525 HOH A 900 DISTANCE = 9.74 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 414 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 67 O REMARK 620 2 GLU A 92 OE1 52.7 REMARK 620 3 GLU A 92 OE2 51.4 3.0 REMARK 620 4 GLN A 95 OE1 48.5 4.5 5.2 REMARK 620 5 GLY A 98 O 49.8 4.8 6.7 2.5 REMARK 620 6 HOH A 741 O 47.0 6.2 4.4 4.2 6.7 REMARK 620 7 HOH A 754 O 49.0 4.4 2.4 3.9 6.1 2.0 REMARK 620 8 HOH A 775 O 46.5 6.3 6.1 2.1 4.2 3.3 4.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 416 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 204 OG REMARK 620 2 ASN A 283 OD1 83.4 REMARK 620 3 HOH A 640 O 79.5 83.3 REMARK 620 4 HOH A 699 O 80.8 93.0 160.3 REMARK 620 5 HOH A 719 O 173.6 95.2 106.6 93.0 REMARK 620 6 HOH A 771 O 86.7 168.4 88.9 91.3 95.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 413 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 217 NE2 REMARK 620 2 ASP A 219 OD1 93.9 REMARK 620 3 HIS A 274 NE2 88.4 94.2 REMARK 620 4 AKG A 401 O1 96.1 94.5 170.0 REMARK 620 5 AKG A 401 O5 94.6 170.9 89.3 81.4 REMARK 620 6 HOH A 525 O 176.8 88.7 89.6 85.5 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 415 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 O REMARK 620 2 ASP A 240 OD1 76.5 REMARK 620 3 HOH A 779 O 78.6 88.0 REMARK 620 4 HOH A 783 O 81.0 156.6 81.1 REMARK 620 5 HOH A 790 O 80.5 106.4 150.9 75.8 REMARK 620 6 HOH A 801 O 152.4 88.4 78.0 109.4 126.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TTM RELATED DB: PDB REMARK 900 FULL LENGTH VERSION OF H6H IN COMPLEX WITH NOG AND HYOSCYAMINE REMARK 900 RELATED ID: 6TTN RELATED DB: PDB REMARK 900 TH6H IN COMPLEX WITH NOG AND HYOSCYAMINE DBREF 6TTO A 34 347 UNP Q6EZB3 Q6EZB3_DATME 34 347 SEQADV 6TTO SER A 31 UNP Q6EZB3 EXPRESSION TAG SEQADV 6TTO ASN A 32 UNP Q6EZB3 EXPRESSION TAG SEQADV 6TTO ALA A 33 UNP Q6EZB3 EXPRESSION TAG SEQRES 1 A 317 SER ASN ALA ASP VAL PRO ILE ILE ASP LEU GLN GLN ASP SEQRES 2 A 317 HIS LEU LEU ILE VAL GLN GLN ILE THR LYS ALA CYS GLN SEQRES 3 A 317 ASP PHE GLY LEU PHE GLN VAL ILE ASN HIS GLY VAL PRO SEQRES 4 A 317 GLU LYS LEU MET VAL GLU ALA MET GLU VAL TYR LYS GLU SEQRES 5 A 317 PHE PHE ALA LEU PRO ALA GLU GLU LYS GLU LYS PHE GLN SEQRES 6 A 317 PRO LYS GLY GLU PRO ALA LYS PHE GLU LEU PRO LEU GLU SEQRES 7 A 317 GLN LYS ALA LYS LEU TYR VAL GLU GLY GLU ARG ARG CYS SEQRES 8 A 317 ASN GLU GLU PHE LEU TYR TRP LYS ASP THR LEU ALA HIS SEQRES 9 A 317 GLY CYS TYR PRO LEU HIS GLU GLU LEU LEU ASN SER TRP SEQRES 10 A 317 PRO GLU LYS PRO PRO THR TYR ARG ASP VAL ILE ALA LYS SEQRES 11 A 317 TYR SER VAL GLU VAL ARG LYS LEU THR MET ARG ILE LEU SEQRES 12 A 317 ASP TYR ILE CYS GLU GLY LEU GLY LEU LYS LEU GLY TYR SEQRES 13 A 317 PHE ASP ASN GLU LEU THR GLN ILE GLN MET LEU LEU ALA SEQRES 14 A 317 ASN TYR TYR PRO SER CYS PRO ASP PRO SER THR THR ILE SEQRES 15 A 317 GLY SER GLY GLY HIS TYR ASP GLY ASN LEU ILE THR LEU SEQRES 16 A 317 LEU GLN GLN ASP LEU VAL GLY LEU GLN GLN LEU ILE VAL SEQRES 17 A 317 LYS ASP ASP LYS TRP ILE ALA VAL GLU PRO ILE PRO THR SEQRES 18 A 317 ALA PHE VAL VAL ASN LEU GLY LEU THR LEU LYS VAL MET SEQRES 19 A 317 SER ASN GLU LYS PHE GLU GLY SER ILE HIS ARG VAL VAL SEQRES 20 A 317 THR HIS PRO ILE ARG ASN ARG ILE SER ILE GLY THR LEU SEQRES 21 A 317 ILE GLY PRO ASP TYR SER CYS THR ILE GLU PRO ILE LYS SEQRES 22 A 317 GLU LEU ILE SER GLN GLU ASN PRO PRO LEU TYR LYS PRO SEQRES 23 A 317 TYR PRO TYR ALA GLU PHE ALA GLU ILE TYR LEU SER ASP SEQRES 24 A 317 LYS SER ASP TYR ASP ALA GLY VAL LYS PRO TYR LYS ILE SEQRES 25 A 317 ASN GLN PHE PRO ASN HET AKG A 401 14 HET EDO A 402 10 HET EDO A 403 10 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 20 HET EDO A 408 10 HET EDO A 409 10 HET EDO A 410 10 HET EDO A 411 10 HET FMT A 412 8 HET NI A 413 1 HET SR A 414 1 HET SR A 415 1 HET NA A 416 1 HETNAM AKG 2-OXOGLUTARIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETNAM NI NICKEL (II) ION HETNAM SR STRONTIUM ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 AKG C5 H6 O5 FORMUL 3 EDO 10(C2 H6 O2) FORMUL 13 FMT C H2 O2 FORMUL 14 NI NI 2+ FORMUL 15 SR 2(SR 2+) FORMUL 17 NA NA 1+ FORMUL 18 HOH *400(H2 O) HELIX 1 AA1 ASP A 43 PHE A 58 1 16 HELIX 2 AA2 PRO A 69 ALA A 85 1 17 HELIX 3 AA3 PRO A 87 GLU A 92 1 6 HELIX 4 AA4 LYS A 93 GLU A 99 5 7 HELIX 5 AA5 HIS A 140 ASN A 145 1 6 HELIX 6 AA6 THR A 153 GLY A 181 1 29 HELIX 7 AA7 ASN A 189 GLN A 193 5 5 HELIX 8 AA8 VAL A 238 ASP A 241 5 4 HELIX 9 AA9 GLY A 258 SER A 265 1 8 HELIX 10 AB1 ILE A 302 ILE A 306 5 5 HELIX 11 AB2 TYR A 319 ASP A 329 1 11 HELIX 12 AB3 VAL A 337 LYS A 341 5 5 SHEET 1 AA1 8 ILE A 37 ASP A 39 0 SHEET 2 AA1 8 LEU A 60 ILE A 64 1 O GLN A 62 N ILE A 38 SHEET 3 AA1 8 PHE A 253 LEU A 257 -1 O VAL A 255 N PHE A 61 SHEET 4 AA1 8 ILE A 223 GLN A 228 -1 N LEU A 226 O VAL A 254 SHEET 5 AA1 8 ARG A 284 GLY A 292 -1 O THR A 289 N LEU A 225 SHEET 6 AA1 8 ILE A 194 TYR A 202 -1 N MET A 196 O LEU A 290 SHEET 7 AA1 8 PHE A 125 GLY A 135 -1 N ASP A 130 O TYR A 201 SHEET 8 AA1 8 LYS A 112 CYS A 121 -1 N CYS A 121 O PHE A 125 SHEET 1 AA2 4 ILE A 212 TYR A 218 0 SHEET 2 AA2 4 ILE A 273 VAL A 277 -1 O HIS A 274 N HIS A 217 SHEET 3 AA2 4 LEU A 233 ILE A 237 -1 N LEU A 236 O ILE A 273 SHEET 4 AA2 4 LYS A 242 ALA A 245 -1 O LYS A 242 N ILE A 237 SHEET 1 AA3 2 THR A 298 ILE A 299 0 SHEET 2 AA3 2 TYR A 317 PRO A 318 -1 O TYR A 317 N ILE A 299 SSBOND 1 CYS A 121 CYS A 205 1555 1555 2.06 LINK O GLY A 67 SR SR A 414 1555 3746 2.54 LINK OE1 GLU A 92 SR SR A 414 1555 1555 2.71 LINK OE2 GLU A 92 SR SR A 414 1555 1555 2.59 LINK OE1 GLN A 95 SR SR A 414 1555 1555 2.59 LINK O GLY A 98 SR SR A 414 1555 1555 2.53 LINK OG SER A 204 NA NA A 416 1555 1555 2.48 LINK NE2 HIS A 217 NI NI A 413 1555 1555 2.07 LINK OD1 ASP A 219 NI NI A 413 1555 1555 2.05 LINK O ASP A 240 SR SR A 415 1555 1555 2.68 LINK OD1 ASP A 240 SR SR A 415 1555 1555 2.43 LINK NE2 HIS A 274 NI NI A 413 1555 1555 2.08 LINK OD1 ASN A 283 NA NA A 416 1555 1555 2.59 LINK O1 AKG A 401 NI NI A 413 1555 1555 2.06 LINK O5 AKG A 401 NI NI A 413 1555 1555 2.07 LINK NI NI A 413 O HOH A 525 1555 1555 2.15 LINK SR SR A 414 O HOH A 741 1555 1555 2.60 LINK SR SR A 414 O HOH A 754 1555 1555 2.55 LINK SR SR A 414 O HOH A 775 1555 1555 2.61 LINK SR SR A 415 O HOH A 779 1555 1555 2.60 LINK SR SR A 415 O HOH A 783 1555 1555 2.46 LINK SR SR A 415 O HOH A 790 1555 1555 2.68 LINK SR SR A 415 O HOH A 801 1555 1555 2.71 LINK NA NA A 416 O HOH A 640 1555 1555 2.78 LINK NA NA A 416 O HOH A 699 1555 1555 2.33 LINK NA NA A 416 O HOH A 719 1555 1555 2.24 LINK NA NA A 416 O HOH A 771 1555 1555 2.23 CISPEP 1 LEU A 105 PRO A 106 0 -2.48 CISPEP 2 TYR A 137 PRO A 138 0 -12.17 CISPEP 3 LYS A 150 PRO A 151 0 3.06 SITE 1 AC1 15 ASN A 200 TYR A 202 HIS A 217 ASP A 219 SITE 2 AC1 15 LEU A 226 HIS A 274 VAL A 276 ARG A 284 SITE 3 AC1 15 SER A 286 NI A 413 HOH A 519 HOH A 525 SITE 4 AC1 15 HOH A 544 HOH A 621 HOH A 746 SITE 1 AC2 6 ASP A 229 LEU A 230 ARG A 282 ASN A 283 SITE 2 AC2 6 ILE A 285 HOH A 564 SITE 1 AC3 8 LEU A 40 GLN A 42 HIS A 44 ILE A 47 SITE 2 AC3 8 GLU A 90 LYS A 93 HOH A 542 HOH A 665 SITE 1 AC4 4 PHE A 84 LYS A 91 ASP A 130 TYR A 201 SITE 1 AC5 7 GLU A 108 GLN A 109 LYS A 110 PRO A 206 SITE 2 AC5 7 PRO A 280 ILE A 281 HOH A 877 SITE 1 AC6 4 LEU A 46 GLN A 49 LEU A 182 LYS A 183 SITE 1 AC7 9 ILE A 64 ASN A 65 HIS A 66 GLU A 70 SITE 2 AC7 9 THR A 251 HOH A 505 HOH A 551 HOH A 623 SITE 3 AC7 9 HOH A 624 SITE 1 AC8 4 GLN A 227 ASP A 229 PRO A 250 HOH A 539 SITE 1 AC9 4 LEU A 46 GLN A 49 GLN A 50 GLY A 181 SITE 1 AD1 7 LEU A 107 GLY A 220 ASN A 221 TYR A 295 SITE 2 AD1 7 TYR A 319 ALA A 323 HOH A 512 SITE 1 AD2 2 SER A 331 ASP A 332 SITE 1 AD3 6 GLN A 56 ASP A 57 LYS A 268 GLU A 270 SITE 2 AD3 6 HOH A 511 HOH A 517 SITE 1 AD4 5 HIS A 217 ASP A 219 HIS A 274 AKG A 401 SITE 2 AD4 5 HOH A 525 SITE 1 AD5 7 GLY A 67 GLU A 92 GLN A 95 GLY A 98 SITE 2 AD5 7 HOH A 741 HOH A 754 HOH A 775 SITE 1 AD6 5 ASP A 240 HOH A 779 HOH A 783 HOH A 790 SITE 2 AD6 5 HOH A 801 SITE 1 AD7 6 SER A 204 ASN A 283 HOH A 640 HOH A 699 SITE 2 AD7 6 HOH A 719 HOH A 771 CRYST1 39.896 79.808 104.437 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009575 0.00000