HEADER SIGNALING PROTEIN 30-DEC-19 6TTR TITLE CRYSTAL STRUCTURE OF THE COILED COIL AND GGDEF DOMAIN OF DGCB FROM TITLE 2 CAULOBACTER CRESCENTUS IN COMPLEX WITH C-DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GGDEF DIGUANYLATE CYCLASE DGCB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES (STRAIN NA1000 / CB15N); SOURCE 3 ORGANISM_TAXID: 565050; SOURCE 4 GENE: DGCB, CCNA_01926; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GGDEF, C-DI-GMP, CYCLIC DI-GMP, CAULOBACTER, DGCB, DIGUANYLATE KEYWDS 2 CYCLASE, DGC, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.HOLZSCHUH,T.SCHIRMER,R.D.TEIXEIRA REVDAT 2 01-MAY-24 6TTR 1 REMARK REVDAT 1 13-JAN-21 6TTR 0 JRNL AUTH F.HOLZSCHUH,T.SCHIRMER,R.D.TEIXEIRA JRNL TITL CRYSTAL STRUCTURE OF THE COILED COIL AND GGDEF DOMAIN OF JRNL TITL 2 DGCB FROM CAULOBACTER CRESCENTUS IN COMPLEX WITH C-DI-GMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 17709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2400 - 5.1900 0.86 2731 163 0.1892 0.2255 REMARK 3 2 5.1900 - 4.1200 0.93 2804 163 0.1747 0.2308 REMARK 3 3 4.1200 - 3.6000 0.92 2797 133 0.2199 0.2864 REMARK 3 4 3.6000 - 3.2700 0.93 2758 146 0.2423 0.2942 REMARK 3 5 3.2700 - 3.0300 0.97 2884 133 0.2836 0.3622 REMARK 3 6 3.0300 - 2.8500 0.96 2852 145 0.3259 0.3518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.427 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.943 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3147 REMARK 3 ANGLE : 1.022 4280 REMARK 3 CHIRALITY : 0.052 473 REMARK 3 PLANARITY : 0.004 547 REMARK 3 DIHEDRAL : 21.055 1880 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TTR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180808 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17722 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 47.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: DGCB GGDEF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M SODIUM NITRATE, 0.09 M SODIUM REMARK 280 PHOSPHATE DIBASIC, 0.09 M AMMONIUM SULFATE, 0.1 M TRIS BICINE, REMARK 280 20% V/V GLYCEROL, 10% W/V PEG 4000, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.04200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.37250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.04200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.37250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 132 REMARK 465 GLY A 133 REMARK 465 SER A 134 REMARK 465 SER A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 SER A 142 REMARK 465 SER A 143 REMARK 465 GLY A 144 REMARK 465 LEU A 145 REMARK 465 VAL A 146 REMARK 465 PRO A 147 REMARK 465 ARG A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 HIS A 151 REMARK 465 MET A 152 REMARK 465 GLU A 344 REMARK 465 SER A 345 REMARK 465 MET A 346 REMARK 465 PRO A 347 REMARK 465 GLY A 348 REMARK 465 ALA A 349 REMARK 465 ALA A 350 REMARK 465 ASN A 351 REMARK 465 ALA A 352 REMARK 465 ALA A 353 REMARK 465 MET B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 SER B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 SER B 142 REMARK 465 SER B 143 REMARK 465 GLY B 144 REMARK 465 LEU B 145 REMARK 465 VAL B 146 REMARK 465 PRO B 147 REMARK 465 ARG B 148 REMARK 465 GLU B 344 REMARK 465 SER B 345 REMARK 465 MET B 346 REMARK 465 PRO B 347 REMARK 465 GLY B 348 REMARK 465 ALA B 349 REMARK 465 ALA B 350 REMARK 465 ASN B 351 REMARK 465 ALA B 352 REMARK 465 ALA B 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 337 177.93 61.54 REMARK 500 SER B 150 -75.11 22.36 REMARK 500 ALA B 249 40.27 -105.52 REMARK 500 ARG B 337 170.49 61.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 DBREF1 6TTR A 153 353 UNP A0A0H3CAN8_CAUVN DBREF2 6TTR A A0A0H3CAN8 153 353 DBREF1 6TTR B 153 353 UNP A0A0H3CAN8_CAUVN DBREF2 6TTR B A0A0H3CAN8 153 353 SEQADV 6TTR MET A 132 UNP A0A0H3CAN INITIATING METHIONINE SEQADV 6TTR GLY A 133 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER A 134 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER A 135 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS A 136 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS A 137 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS A 138 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS A 139 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS A 140 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS A 141 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER A 142 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER A 143 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR GLY A 144 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR LEU A 145 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR VAL A 146 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR PRO A 147 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR ARG A 148 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR GLY A 149 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER A 150 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS A 151 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR MET A 152 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR ALA A 261 UNP A0A0H3CAN GLU 261 ENGINEERED MUTATION SEQADV 6TTR ALA A 262 UNP A0A0H3CAN GLU 262 ENGINEERED MUTATION SEQADV 6TTR MET B 132 UNP A0A0H3CAN INITIATING METHIONINE SEQADV 6TTR GLY B 133 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER B 134 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER B 135 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS B 136 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS B 137 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS B 138 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS B 139 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS B 140 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS B 141 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER B 142 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER B 143 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR GLY B 144 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR LEU B 145 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR VAL B 146 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR PRO B 147 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR ARG B 148 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR GLY B 149 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR SER B 150 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR HIS B 151 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR MET B 152 UNP A0A0H3CAN EXPRESSION TAG SEQADV 6TTR ALA B 261 UNP A0A0H3CAN GLU 261 ENGINEERED MUTATION SEQADV 6TTR ALA B 262 UNP A0A0H3CAN GLU 262 ENGINEERED MUTATION SEQRES 1 A 222 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 222 LEU VAL PRO ARG GLY SER HIS MET GLN SER LEU GLU ALA SEQRES 3 A 222 ARG LEU ALA ASP SER THR ALA GLU VAL GLU ARG LEU ARG SEQRES 4 A 222 GLU HIS LEU GLU GLN VAL ARG ARG ASP ALA THR THR ASP SEQRES 5 A 222 GLY LEU THR ASN LEU ALA ASN ARG LYS ALA PHE ASP ASP SEQRES 6 A 222 GLU LEU ASP ARG ALA CYS ALA GLU ALA GLU GLU GLY GLY SEQRES 7 A 222 THR THR ILE CYS LEU ALA VAL LEU ASP ILE ASP HIS PHE SEQRES 8 A 222 LYS GLY PHE ASN ASP THR TRP GLY HIS GLN THR GLY ASP SEQRES 9 A 222 GLN VAL ILE ARG TYR VAL ALA SER VAL ILE GLY ARG VAL SEQRES 10 A 222 ALA ALA PRO PRO ARG PHE ALA ALA ARG TYR GLY GLY ALA SEQRES 11 A 222 ALA PHE ALA MET ILE PHE PRO ARG GLU ALA ALA SER VAL SEQRES 12 A 222 VAL ALA THR THR LEU GLU GLU ILE ARG VAL GLU VAL SER SEQRES 13 A 222 SER ARG MET LEU LYS ARG ARG SER THR ASN GLU ASP LEU SEQRES 14 A 222 GLY ALA ILE THR VAL SER SER GLY PHE ALA GLU ARG LYS SEQRES 15 A 222 PRO GLY GLU SER GLY HIS SER VAL MET GLU ARG ALA ASP SEQRES 16 A 222 ALA ALA LEU TYR ALA SER LYS ARG GLY GLY ARG ASN ARG SEQRES 17 A 222 VAL THR ALA ALA GLU SER MET PRO GLY ALA ALA ASN ALA SEQRES 18 A 222 ALA SEQRES 1 B 222 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 222 LEU VAL PRO ARG GLY SER HIS MET GLN SER LEU GLU ALA SEQRES 3 B 222 ARG LEU ALA ASP SER THR ALA GLU VAL GLU ARG LEU ARG SEQRES 4 B 222 GLU HIS LEU GLU GLN VAL ARG ARG ASP ALA THR THR ASP SEQRES 5 B 222 GLY LEU THR ASN LEU ALA ASN ARG LYS ALA PHE ASP ASP SEQRES 6 B 222 GLU LEU ASP ARG ALA CYS ALA GLU ALA GLU GLU GLY GLY SEQRES 7 B 222 THR THR ILE CYS LEU ALA VAL LEU ASP ILE ASP HIS PHE SEQRES 8 B 222 LYS GLY PHE ASN ASP THR TRP GLY HIS GLN THR GLY ASP SEQRES 9 B 222 GLN VAL ILE ARG TYR VAL ALA SER VAL ILE GLY ARG VAL SEQRES 10 B 222 ALA ALA PRO PRO ARG PHE ALA ALA ARG TYR GLY GLY ALA SEQRES 11 B 222 ALA PHE ALA MET ILE PHE PRO ARG GLU ALA ALA SER VAL SEQRES 12 B 222 VAL ALA THR THR LEU GLU GLU ILE ARG VAL GLU VAL SER SEQRES 13 B 222 SER ARG MET LEU LYS ARG ARG SER THR ASN GLU ASP LEU SEQRES 14 B 222 GLY ALA ILE THR VAL SER SER GLY PHE ALA GLU ARG LYS SEQRES 15 B 222 PRO GLY GLU SER GLY HIS SER VAL MET GLU ARG ALA ASP SEQRES 16 B 222 ALA ALA LEU TYR ALA SER LYS ARG GLY GLY ARG ASN ARG SEQRES 17 B 222 VAL THR ALA ALA GLU SER MET PRO GLY ALA ALA ASN ALA SEQRES 18 B 222 ALA HET PO4 A 401 5 HET C2E A 402 46 HET C2E A 403 46 HET C2E B 401 46 HET PO4 B 402 5 HETNAM PO4 PHOSPHATE ION HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 C2E 3(C20 H24 N10 O14 P2) HELIX 1 AA1 SER A 154 ALA A 180 1 27 HELIX 2 AA2 ASN A 190 GLY A 208 1 19 HELIX 3 AA3 PHE A 222 GLY A 230 1 9 HELIX 4 AA4 GLY A 230 ALA A 249 1 20 HELIX 5 AA5 ALA A 271 ARG A 289 1 19 HELIX 6 AA6 SER A 317 GLY A 335 1 19 HELIX 7 AA7 SER B 150 THR B 181 1 32 HELIX 8 AA8 ARG B 191 GLU B 207 1 17 HELIX 9 AA9 HIS B 221 GLY B 230 1 10 HELIX 10 AB1 GLY B 230 ALA B 249 1 20 HELIX 11 AB2 ALA B 271 ARG B 289 1 19 HELIX 12 AB3 SER B 317 GLY B 335 1 19 SHEET 1 AA1 5 PHE A 254 ALA A 256 0 SHEET 2 AA1 5 ALA A 262 PRO A 268 -1 O ILE A 266 N PHE A 254 SHEET 3 AA1 5 ILE A 212 ILE A 219 -1 N LEU A 217 O PHE A 263 SHEET 4 AA1 5 VAL A 305 GLU A 311 -1 O GLY A 308 N VAL A 216 SHEET 5 AA1 5 VAL A 340 ALA A 342 1 O THR A 341 N PHE A 309 SHEET 1 AA2 7 THR B 182 ASP B 183 0 SHEET 2 AA2 7 LEU B 188 ASN B 190 -1 O LEU B 188 N ASP B 183 SHEET 3 AA2 7 PHE B 254 ARG B 257 1 O ARG B 257 N ALA B 189 SHEET 4 AA2 7 ALA B 262 PRO B 268 -1 O ALA B 264 N ALA B 256 SHEET 5 AA2 7 ILE B 212 ILE B 219 -1 N LEU B 217 O PHE B 263 SHEET 6 AA2 7 VAL B 305 GLU B 311 -1 O GLY B 308 N VAL B 216 SHEET 7 AA2 7 VAL B 340 ALA B 342 1 O THR B 341 N PHE B 309 CISPEP 1 PRO A 251 PRO A 252 0 8.17 CISPEP 2 PRO B 251 PRO B 252 0 9.92 SITE 1 AC1 6 ILE A 219 ASP A 220 HIS A 221 LYS A 333 SITE 2 AC1 6 ARG A 337 LYS B 223 SITE 1 AC2 13 GLN A 236 ARG A 239 TYR A 240 SER A 243 SITE 2 AC2 13 ARG A 247 ARG A 289 LEU A 291 LYS A 292 SITE 3 AC2 13 ARG A 294 C2E A 403 ARG B 289 LYS B 292 SITE 4 AC2 13 ARG B 294 SITE 1 AC3 11 ARG A 289 ARG A 294 C2E A 402 GLN B 236 SITE 2 AC3 11 ARG B 239 TYR B 240 SER B 243 ARG B 289 SITE 3 AC3 11 LEU B 291 LYS B 292 ARG B 294 SITE 1 AC4 17 LEU A 185 PHE A 222 ASN A 226 HIS A 231 SITE 2 AC4 17 ASP A 235 ILE A 238 ARG A 257 ALA A 261 SITE 3 AC4 17 PHE B 222 LYS B 223 ASN B 226 HIS B 231 SITE 4 AC4 17 GLY B 234 ASP B 235 ILE B 238 ARG B 257 SITE 5 AC4 17 GLY B 260 SITE 1 AC5 6 ASP B 218 ILE B 219 ASP B 220 HIS B 221 SITE 2 AC5 6 LYS B 333 ARG B 337 CRYST1 88.084 148.745 60.401 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011353 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016556 0.00000