HEADER RECOMBINATION 08-JAN-20 6TUU TITLE LEISHMANIA INFANTUM RAD51 SURROGATE LIRADA10 IN COMPLEX WITH 5,6,7,8- TITLE 2 TETRAHYDRO-2-NAPHTHOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR AND RECOMBINATION PROTEIN RADA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM SOURCE 3 3638 / JCM 8422 / VC1); SOURCE 4 ORGANISM_TAXID: 186497; SOURCE 5 GENE: RADA, PF1926; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RECOMBINASE, FBDD, FRAGMENT, SURROGATE, RADA, RAD51, ARCHAEAL, KEYWDS 2 RECOMBINATION EXPDTA X-RAY DIFFRACTION AUTHOR T.PANTELEJEVS,M.HYVONEN REVDAT 2 24-JAN-24 6TUU 1 REMARK REVDAT 1 27-JAN-21 6TUU 0 JRNL AUTH P.BREAR,T.PANTELEJEVS,M.HYVONEN JRNL TITL DEVELOPMENT OF DEDICATED CRYSTALLOGRAPHIC SYSTEMS FOR JRNL TITL 2 STRUCTURE-GUIDED DRUG DISCOVERY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 80642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3999 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1613 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2051 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1535 REMARK 3 BIN R VALUE (WORKING SET) : 0.2056 REMARK 3 BIN FREE R VALUE : 0.1953 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.84 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 78 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.37700 REMARK 3 B22 (A**2) : -6.23410 REMARK 3 B33 (A**2) : 0.85710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.134 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.132 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7052 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9567 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2539 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1266 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7052 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 919 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8709 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.18 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.43 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968610 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80648 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.735 REMARK 200 RESOLUTION RANGE LOW (A) : 48.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.86600 REMARK 200 R SYM FOR SHELL (I) : 0.86600 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 5JFG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 %W/V PEG 1K (PRECIPITANT), 0.1 M NA REMARK 280 K PHOS 6.2 PH (BUFFER), 0.2 M NACL (SALT), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.48800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 107 REMARK 465 GLN A 286 REMARK 465 ALA A 287 REMARK 465 ASN A 288 REMARK 465 PRO A 289 REMARK 465 ASP A 290 REMARK 465 ALA A 291 REMARK 465 PHE A 292 REMARK 465 PHE A 293 REMARK 465 GLY A 294 REMARK 465 ASP A 295 REMARK 465 PRO A 296 REMARK 465 THR A 297 REMARK 465 ARG A 298 REMARK 465 PRO A 299 REMARK 465 ILE A 300 REMARK 465 GLY A 301 REMARK 465 GLY A 302 REMARK 465 HIS A 303 REMARK 465 ILE A 304 REMARK 465 LEU A 305 REMARK 465 ALA A 306 REMARK 465 HIS A 307 REMARK 465 ALA A 330 REMARK 465 PRO A 331 REMARK 465 HIS A 332 REMARK 465 LEU A 333 REMARK 465 PRO A 334 REMARK 465 GLU A 335 REMARK 465 MET B 107 REMARK 465 ASN B 288 REMARK 465 PRO B 289 REMARK 465 ASP B 290 REMARK 465 ALA B 291 REMARK 465 PHE B 292 REMARK 465 PHE B 293 REMARK 465 GLY B 294 REMARK 465 ASP B 295 REMARK 465 PRO B 296 REMARK 465 THR B 297 REMARK 465 ARG B 298 REMARK 465 PRO B 299 REMARK 465 ILE B 300 REMARK 465 GLY B 301 REMARK 465 GLY B 302 REMARK 465 HIS B 303 REMARK 465 ILE B 304 REMARK 465 LEU B 305 REMARK 465 ALA B 306 REMARK 465 HIS B 307 REMARK 465 MET C 107 REMARK 465 GLN C 286 REMARK 465 ALA C 287 REMARK 465 ASN C 288 REMARK 465 PRO C 289 REMARK 465 ASP C 290 REMARK 465 ALA C 291 REMARK 465 PHE C 292 REMARK 465 PHE C 293 REMARK 465 GLY C 294 REMARK 465 ASP C 295 REMARK 465 PRO C 296 REMARK 465 THR C 297 REMARK 465 ARG C 298 REMARK 465 PRO C 299 REMARK 465 ILE C 300 REMARK 465 ALA C 330 REMARK 465 PRO C 331 REMARK 465 MET D 107 REMARK 465 ALA D 108 REMARK 465 THR D 109 REMARK 465 PRO D 289 REMARK 465 ASP D 290 REMARK 465 ALA D 291 REMARK 465 PHE D 292 REMARK 465 PHE D 293 REMARK 465 GLY D 294 REMARK 465 ASP D 295 REMARK 465 PRO D 296 REMARK 465 THR D 297 REMARK 465 ARG D 298 REMARK 465 PRO D 299 REMARK 465 ILE D 300 REMARK 465 PRO D 331 REMARK 465 HIS D 332 REMARK 465 LEU D 333 REMARK 465 PRO D 334 REMARK 465 GLU D 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 251 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG B 251 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG C 251 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS C 319 CG CD CE NZ REMARK 470 ARG D 251 CB CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 269 CG REMARK 480 ASP A 329 CG REMARK 480 HIS B 269 NE2 REMARK 480 ASP B 329 CG REMARK 480 HIS C 269 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 251 -78.45 -64.78 REMARK 500 ARG B 251 -77.35 -54.22 REMARK 500 THR B 343 -167.75 -127.44 REMARK 500 ALA C 306 71.22 -165.10 REMARK 500 THR C 343 -166.44 -127.94 REMARK 500 ALA D 287 29.26 -140.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 659 DISTANCE = 6.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NY5 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NY5 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NY5 C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NY5 D 401 DBREF 6TUU A 108 349 UNP O74036 RADA_PYRFU 108 349 DBREF 6TUU B 108 349 UNP O74036 RADA_PYRFU 108 349 DBREF 6TUU C 108 349 UNP O74036 RADA_PYRFU 108 349 DBREF 6TUU D 108 349 UNP O74036 RADA_PYRFU 108 349 SEQADV 6TUU MET A 107 UNP O74036 INITIATING METHIONINE SEQADV 6TUU ALA A 168 UNP O74036 VAL 168 CONFLICT SEQADV 6TUU LEU A 169 UNP O74036 ILE 169 CONFLICT SEQADV 6TUU TYR A 170 UNP O74036 TRP 170 CONFLICT SEQADV 6TUU LEU A 182 UNP O74036 ILE 182 CONFLICT SEQADV 6TUU ALA A 198 UNP O74036 LYS 198 CONFLICT SEQADV 6TUU ASN A 199 UNP O74036 HIS 199 CONFLICT SEQADV 6TUU VAL A 200 UNP O74036 ILE 200 CONFLICT SEQADV 6TUU ALA A 201 UNP O74036 TYR 201 CONFLICT SEQADV 6TUU CYS A 202 UNP O74036 VAL 202 CONFLICT SEQADV 6TUU MET A 221 UNP O74036 LYS 221 CONFLICT SEQADV 6TUU ASN A 288 UNP O74036 ARG 288 CONFLICT SEQADV 6TUU MET B 107 UNP O74036 INITIATING METHIONINE SEQADV 6TUU ALA B 168 UNP O74036 VAL 168 CONFLICT SEQADV 6TUU LEU B 169 UNP O74036 ILE 169 CONFLICT SEQADV 6TUU TYR B 170 UNP O74036 TRP 170 CONFLICT SEQADV 6TUU LEU B 182 UNP O74036 ILE 182 CONFLICT SEQADV 6TUU ALA B 198 UNP O74036 LYS 198 CONFLICT SEQADV 6TUU ASN B 199 UNP O74036 HIS 199 CONFLICT SEQADV 6TUU VAL B 200 UNP O74036 ILE 200 CONFLICT SEQADV 6TUU ALA B 201 UNP O74036 TYR 201 CONFLICT SEQADV 6TUU CYS B 202 UNP O74036 VAL 202 CONFLICT SEQADV 6TUU MET B 221 UNP O74036 LYS 221 CONFLICT SEQADV 6TUU ASN B 288 UNP O74036 ARG 288 CONFLICT SEQADV 6TUU MET C 107 UNP O74036 INITIATING METHIONINE SEQADV 6TUU ALA C 168 UNP O74036 VAL 168 CONFLICT SEQADV 6TUU LEU C 169 UNP O74036 ILE 169 CONFLICT SEQADV 6TUU TYR C 170 UNP O74036 TRP 170 CONFLICT SEQADV 6TUU LEU C 182 UNP O74036 ILE 182 CONFLICT SEQADV 6TUU ALA C 198 UNP O74036 LYS 198 CONFLICT SEQADV 6TUU ASN C 199 UNP O74036 HIS 199 CONFLICT SEQADV 6TUU VAL C 200 UNP O74036 ILE 200 CONFLICT SEQADV 6TUU ALA C 201 UNP O74036 TYR 201 CONFLICT SEQADV 6TUU CYS C 202 UNP O74036 VAL 202 CONFLICT SEQADV 6TUU MET C 221 UNP O74036 LYS 221 CONFLICT SEQADV 6TUU ASN C 288 UNP O74036 ARG 288 CONFLICT SEQADV 6TUU MET D 107 UNP O74036 INITIATING METHIONINE SEQADV 6TUU ALA D 168 UNP O74036 VAL 168 CONFLICT SEQADV 6TUU LEU D 169 UNP O74036 ILE 169 CONFLICT SEQADV 6TUU TYR D 170 UNP O74036 TRP 170 CONFLICT SEQADV 6TUU LEU D 182 UNP O74036 ILE 182 CONFLICT SEQADV 6TUU ALA D 198 UNP O74036 LYS 198 CONFLICT SEQADV 6TUU ASN D 199 UNP O74036 HIS 199 CONFLICT SEQADV 6TUU VAL D 200 UNP O74036 ILE 200 CONFLICT SEQADV 6TUU ALA D 201 UNP O74036 TYR 201 CONFLICT SEQADV 6TUU CYS D 202 UNP O74036 VAL 202 CONFLICT SEQADV 6TUU MET D 221 UNP O74036 LYS 221 CONFLICT SEQADV 6TUU ASN D 288 UNP O74036 ARG 288 CONFLICT SEQRES 1 A 243 MET ALA THR ILE GLY ARG ILE SER THR GLY SER LYS SER SEQRES 2 A 243 LEU ASP LYS LEU LEU GLY GLY GLY ILE GLU THR GLN ALA SEQRES 3 A 243 ILE THR GLU VAL PHE GLY GLU PHE GLY SER GLY LYS THR SEQRES 4 A 243 GLN LEU ALA HIS THR LEU ALA VAL MET VAL GLN LEU PRO SEQRES 5 A 243 PRO GLU GLU GLY GLY LEU ASN GLY SER ALA LEU TYR ILE SEQRES 6 A 243 ASP THR GLU ASN THR PHE ARG PRO GLU ARG LEU ARG GLU SEQRES 7 A 243 ILE ALA GLN ASN ARG GLY LEU ASP PRO ASP GLU VAL LEU SEQRES 8 A 243 ALA ASN VAL ALA CYS ALA ARG ALA PHE ASN SER ASN HIS SEQRES 9 A 243 GLN MET LEU LEU VAL GLN GLN ALA GLU ASP MET ILE LYS SEQRES 10 A 243 GLU LEU LEU ASN THR ASP ARG PRO VAL LYS LEU LEU ILE SEQRES 11 A 243 VAL ASP SER LEU THR SER HIS PHE ARG SER GLU TYR ILE SEQRES 12 A 243 GLY ARG GLY ALA LEU ALA GLU ARG GLN GLN LYS LEU ALA SEQRES 13 A 243 LYS HIS LEU ALA ASP LEU HIS ARG LEU ALA ASN LEU TYR SEQRES 14 A 243 ASP ILE ALA VAL PHE VAL THR ASN GLN VAL GLN ALA ASN SEQRES 15 A 243 PRO ASP ALA PHE PHE GLY ASP PRO THR ARG PRO ILE GLY SEQRES 16 A 243 GLY HIS ILE LEU ALA HIS SER ALA THR LEU ARG VAL TYR SEQRES 17 A 243 LEU ARG LYS GLY LYS GLY GLY LYS ARG ILE ALA ARG LEU SEQRES 18 A 243 ILE ASP ALA PRO HIS LEU PRO GLU GLY GLU ALA VAL PHE SEQRES 19 A 243 SER ILE THR GLU LYS GLY ILE GLU ASP SEQRES 1 B 243 MET ALA THR ILE GLY ARG ILE SER THR GLY SER LYS SER SEQRES 2 B 243 LEU ASP LYS LEU LEU GLY GLY GLY ILE GLU THR GLN ALA SEQRES 3 B 243 ILE THR GLU VAL PHE GLY GLU PHE GLY SER GLY LYS THR SEQRES 4 B 243 GLN LEU ALA HIS THR LEU ALA VAL MET VAL GLN LEU PRO SEQRES 5 B 243 PRO GLU GLU GLY GLY LEU ASN GLY SER ALA LEU TYR ILE SEQRES 6 B 243 ASP THR GLU ASN THR PHE ARG PRO GLU ARG LEU ARG GLU SEQRES 7 B 243 ILE ALA GLN ASN ARG GLY LEU ASP PRO ASP GLU VAL LEU SEQRES 8 B 243 ALA ASN VAL ALA CYS ALA ARG ALA PHE ASN SER ASN HIS SEQRES 9 B 243 GLN MET LEU LEU VAL GLN GLN ALA GLU ASP MET ILE LYS SEQRES 10 B 243 GLU LEU LEU ASN THR ASP ARG PRO VAL LYS LEU LEU ILE SEQRES 11 B 243 VAL ASP SER LEU THR SER HIS PHE ARG SER GLU TYR ILE SEQRES 12 B 243 GLY ARG GLY ALA LEU ALA GLU ARG GLN GLN LYS LEU ALA SEQRES 13 B 243 LYS HIS LEU ALA ASP LEU HIS ARG LEU ALA ASN LEU TYR SEQRES 14 B 243 ASP ILE ALA VAL PHE VAL THR ASN GLN VAL GLN ALA ASN SEQRES 15 B 243 PRO ASP ALA PHE PHE GLY ASP PRO THR ARG PRO ILE GLY SEQRES 16 B 243 GLY HIS ILE LEU ALA HIS SER ALA THR LEU ARG VAL TYR SEQRES 17 B 243 LEU ARG LYS GLY LYS GLY GLY LYS ARG ILE ALA ARG LEU SEQRES 18 B 243 ILE ASP ALA PRO HIS LEU PRO GLU GLY GLU ALA VAL PHE SEQRES 19 B 243 SER ILE THR GLU LYS GLY ILE GLU ASP SEQRES 1 C 243 MET ALA THR ILE GLY ARG ILE SER THR GLY SER LYS SER SEQRES 2 C 243 LEU ASP LYS LEU LEU GLY GLY GLY ILE GLU THR GLN ALA SEQRES 3 C 243 ILE THR GLU VAL PHE GLY GLU PHE GLY SER GLY LYS THR SEQRES 4 C 243 GLN LEU ALA HIS THR LEU ALA VAL MET VAL GLN LEU PRO SEQRES 5 C 243 PRO GLU GLU GLY GLY LEU ASN GLY SER ALA LEU TYR ILE SEQRES 6 C 243 ASP THR GLU ASN THR PHE ARG PRO GLU ARG LEU ARG GLU SEQRES 7 C 243 ILE ALA GLN ASN ARG GLY LEU ASP PRO ASP GLU VAL LEU SEQRES 8 C 243 ALA ASN VAL ALA CYS ALA ARG ALA PHE ASN SER ASN HIS SEQRES 9 C 243 GLN MET LEU LEU VAL GLN GLN ALA GLU ASP MET ILE LYS SEQRES 10 C 243 GLU LEU LEU ASN THR ASP ARG PRO VAL LYS LEU LEU ILE SEQRES 11 C 243 VAL ASP SER LEU THR SER HIS PHE ARG SER GLU TYR ILE SEQRES 12 C 243 GLY ARG GLY ALA LEU ALA GLU ARG GLN GLN LYS LEU ALA SEQRES 13 C 243 LYS HIS LEU ALA ASP LEU HIS ARG LEU ALA ASN LEU TYR SEQRES 14 C 243 ASP ILE ALA VAL PHE VAL THR ASN GLN VAL GLN ALA ASN SEQRES 15 C 243 PRO ASP ALA PHE PHE GLY ASP PRO THR ARG PRO ILE GLY SEQRES 16 C 243 GLY HIS ILE LEU ALA HIS SER ALA THR LEU ARG VAL TYR SEQRES 17 C 243 LEU ARG LYS GLY LYS GLY GLY LYS ARG ILE ALA ARG LEU SEQRES 18 C 243 ILE ASP ALA PRO HIS LEU PRO GLU GLY GLU ALA VAL PHE SEQRES 19 C 243 SER ILE THR GLU LYS GLY ILE GLU ASP SEQRES 1 D 243 MET ALA THR ILE GLY ARG ILE SER THR GLY SER LYS SER SEQRES 2 D 243 LEU ASP LYS LEU LEU GLY GLY GLY ILE GLU THR GLN ALA SEQRES 3 D 243 ILE THR GLU VAL PHE GLY GLU PHE GLY SER GLY LYS THR SEQRES 4 D 243 GLN LEU ALA HIS THR LEU ALA VAL MET VAL GLN LEU PRO SEQRES 5 D 243 PRO GLU GLU GLY GLY LEU ASN GLY SER ALA LEU TYR ILE SEQRES 6 D 243 ASP THR GLU ASN THR PHE ARG PRO GLU ARG LEU ARG GLU SEQRES 7 D 243 ILE ALA GLN ASN ARG GLY LEU ASP PRO ASP GLU VAL LEU SEQRES 8 D 243 ALA ASN VAL ALA CYS ALA ARG ALA PHE ASN SER ASN HIS SEQRES 9 D 243 GLN MET LEU LEU VAL GLN GLN ALA GLU ASP MET ILE LYS SEQRES 10 D 243 GLU LEU LEU ASN THR ASP ARG PRO VAL LYS LEU LEU ILE SEQRES 11 D 243 VAL ASP SER LEU THR SER HIS PHE ARG SER GLU TYR ILE SEQRES 12 D 243 GLY ARG GLY ALA LEU ALA GLU ARG GLN GLN LYS LEU ALA SEQRES 13 D 243 LYS HIS LEU ALA ASP LEU HIS ARG LEU ALA ASN LEU TYR SEQRES 14 D 243 ASP ILE ALA VAL PHE VAL THR ASN GLN VAL GLN ALA ASN SEQRES 15 D 243 PRO ASP ALA PHE PHE GLY ASP PRO THR ARG PRO ILE GLY SEQRES 16 D 243 GLY HIS ILE LEU ALA HIS SER ALA THR LEU ARG VAL TYR SEQRES 17 D 243 LEU ARG LYS GLY LYS GLY GLY LYS ARG ILE ALA ARG LEU SEQRES 18 D 243 ILE ASP ALA PRO HIS LEU PRO GLU GLY GLU ALA VAL PHE SEQRES 19 D 243 SER ILE THR GLU LYS GLY ILE GLU ASP HET PO4 A 401 5 HET NY5 A 402 24 HET PO4 B 401 5 HET NY5 B 402 24 HET NY5 C 401 24 HET CL C 402 1 HET NY5 D 401 24 HETNAM PO4 PHOSPHATE ION HETNAM NY5 5,6,7,8-TETRAHYDRONAPHTHALENE-2-CARBOXYLIC ACID HETNAM CL CHLORIDE ION FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 NY5 4(C11 H12 O2) FORMUL 10 CL CL 1- FORMUL 12 HOH *600(H2 O) HELIX 1 AA1 SER A 117 LEU A 124 1 8 HELIX 2 AA2 GLY A 143 VAL A 155 1 13 HELIX 3 AA3 GLN A 156 LEU A 157 5 2 HELIX 4 AA4 PRO A 158 GLY A 162 5 5 HELIX 5 AA5 ARG A 178 ARG A 189 1 12 HELIX 6 AA6 ASP A 192 ASN A 199 1 8 HELIX 7 AA7 ASN A 207 LEU A 226 1 20 HELIX 8 AA8 THR A 241 TYR A 248 1 8 HELIX 9 AA9 GLY A 252 TYR A 275 1 24 HELIX 10 AB1 LYS A 319 GLY A 321 5 3 HELIX 11 AB2 SER B 117 LEU B 124 1 8 HELIX 12 AB3 GLY B 143 VAL B 155 1 13 HELIX 13 AB4 GLN B 156 LEU B 157 5 2 HELIX 14 AB5 PRO B 158 GLY B 162 5 5 HELIX 15 AB6 ARG B 178 ASN B 188 1 11 HELIX 16 AB7 ASP B 192 ASN B 199 1 8 HELIX 17 AB8 ASN B 207 LEU B 226 1 20 HELIX 18 AB9 THR B 241 TYR B 248 1 8 HELIX 19 AC1 GLY B 252 TYR B 275 1 24 HELIX 20 AC2 LYS B 319 GLY B 321 5 3 HELIX 21 AC3 SER C 117 LEU C 124 1 8 HELIX 22 AC4 GLY C 143 VAL C 155 1 13 HELIX 23 AC5 GLN C 156 LEU C 157 5 2 HELIX 24 AC6 PRO C 158 GLY C 162 5 5 HELIX 25 AC7 ARG C 178 ARG C 189 1 12 HELIX 26 AC8 ASP C 192 ASN C 199 1 8 HELIX 27 AC9 ASN C 207 ASN C 227 1 21 HELIX 28 AD1 THR C 241 TYR C 248 1 8 HELIX 29 AD2 GLY C 252 TYR C 275 1 24 HELIX 30 AD3 ALA C 306 SER C 308 5 3 HELIX 31 AD4 SER D 117 LEU D 124 1 8 HELIX 32 AD5 GLY D 143 VAL D 155 1 13 HELIX 33 AD6 GLN D 156 LEU D 157 5 2 HELIX 34 AD7 PRO D 158 GLY D 162 5 5 HELIX 35 AD8 ARG D 178 ARG D 189 1 12 HELIX 36 AD9 ASP D 192 ASN D 199 1 8 HELIX 37 AE1 ASN D 207 LEU D 226 1 20 HELIX 38 AE2 THR D 241 TYR D 248 1 8 HELIX 39 AE3 GLY D 252 ASP D 276 1 25 SHEET 1 AA1 2 ARG A 112 ILE A 113 0 SHEET 2 AA1 2 ILE A 128 GLU A 129 -1 O ILE A 128 N ILE A 113 SHEET 1 AA2 9 VAL A 200 ARG A 204 0 SHEET 2 AA2 9 SER A 167 ASP A 172 1 N TYR A 170 O ALA A 201 SHEET 3 AA2 9 VAL A 232 ASP A 238 1 O ILE A 236 N ILE A 171 SHEET 4 AA2 9 ALA A 278 GLN A 284 1 O PHE A 280 N LEU A 235 SHEET 5 AA2 9 ALA A 132 GLY A 138 1 N THR A 134 O VAL A 279 SHEET 6 AA2 9 LEU A 311 LYS A 317 1 O VAL A 313 N GLU A 135 SHEET 7 AA2 9 ARG A 323 ILE A 328 -1 O ILE A 324 N ARG A 316 SHEET 8 AA2 9 ALA A 338 THR A 343 -1 O PHE A 340 N ARG A 323 SHEET 9 AA2 9 GLY A 346 GLU A 348 -1 O GLU A 348 N SER A 341 SHEET 1 AA3 2 ARG B 112 ILE B 113 0 SHEET 2 AA3 2 ILE B 128 GLU B 129 -1 O ILE B 128 N ILE B 113 SHEET 1 AA4 9 VAL B 200 ARG B 204 0 SHEET 2 AA4 9 SER B 167 ASP B 172 1 N TYR B 170 O ALA B 201 SHEET 3 AA4 9 VAL B 232 ASP B 238 1 O ILE B 236 N ILE B 171 SHEET 4 AA4 9 ALA B 278 GLN B 284 1 O PHE B 280 N LEU B 235 SHEET 5 AA4 9 ALA B 132 GLY B 138 1 N THR B 134 O VAL B 279 SHEET 6 AA4 9 LEU B 311 LYS B 317 1 O VAL B 313 N GLU B 135 SHEET 7 AA4 9 ARG B 323 ILE B 328 -1 O ARG B 326 N TYR B 314 SHEET 8 AA4 9 ALA B 338 THR B 343 -1 O PHE B 340 N ARG B 323 SHEET 9 AA4 9 GLY B 346 GLU B 348 -1 O GLU B 348 N SER B 341 SHEET 1 AA5 2 ARG C 112 ILE C 113 0 SHEET 2 AA5 2 ILE C 128 GLU C 129 -1 O ILE C 128 N ILE C 113 SHEET 1 AA6 9 VAL C 200 ARG C 204 0 SHEET 2 AA6 9 SER C 167 ASP C 172 1 N TYR C 170 O ALA C 201 SHEET 3 AA6 9 VAL C 232 ASP C 238 1 O ILE C 236 N ILE C 171 SHEET 4 AA6 9 ALA C 278 GLN C 284 1 O PHE C 280 N LEU C 235 SHEET 5 AA6 9 ALA C 132 GLY C 138 1 N THR C 134 O VAL C 279 SHEET 6 AA6 9 THR C 310 LYS C 317 1 O LEU C 311 N GLU C 135 SHEET 7 AA6 9 ARG C 323 ILE C 328 -1 O ARG C 326 N TYR C 314 SHEET 8 AA6 9 ALA C 338 THR C 343 -1 O PHE C 340 N ARG C 323 SHEET 9 AA6 9 GLY C 346 GLU C 348 -1 O GLU C 348 N SER C 341 SHEET 1 AA7 2 ARG D 112 ILE D 113 0 SHEET 2 AA7 2 ILE D 128 GLU D 129 -1 O ILE D 128 N ILE D 113 SHEET 1 AA8 9 VAL D 200 ARG D 204 0 SHEET 2 AA8 9 SER D 167 ASP D 172 1 N ASP D 172 O ALA D 203 SHEET 3 AA8 9 VAL D 232 ASP D 238 1 O ILE D 236 N ILE D 171 SHEET 4 AA8 9 ALA D 278 GLN D 284 1 O PHE D 280 N LEU D 235 SHEET 5 AA8 9 ALA D 132 GLY D 138 1 N THR D 134 O VAL D 281 SHEET 6 AA8 9 LEU D 311 LYS D 317 1 O LEU D 311 N GLU D 135 SHEET 7 AA8 9 LYS D 322 ILE D 328 -1 O ARG D 326 N TYR D 314 SHEET 8 AA8 9 ALA D 338 THR D 343 -1 O PHE D 340 N ARG D 323 SHEET 9 AA8 9 GLY D 346 GLU D 348 -1 O GLU D 348 N SER D 341 SITE 1 AC1 13 GLU A 139 PHE A 140 GLY A 141 SER A 142 SITE 2 AC1 13 GLY A 143 LYS A 144 THR A 145 HOH A 520 SITE 3 AC1 13 HOH A 521 HOH A 530 HOH A 531 HOH A 560 SITE 4 AC1 13 HOH A 569 SITE 1 AC2 6 TYR A 170 ALA A 201 ALA A 203 LEU A 214 SITE 2 AC2 6 MET A 221 HOH A 537 SITE 1 AC3 11 GLU B 139 PHE B 140 GLY B 141 SER B 142 SITE 2 AC3 11 GLY B 143 LYS B 144 THR B 145 HOH B 501 SITE 3 AC3 11 HOH B 506 HOH B 509 HOH B 525 SITE 1 AC4 6 ALA B 201 ALA B 203 LEU B 214 GLN B 217 SITE 2 AC4 6 ALA B 218 MET B 221 SITE 1 AC5 5 ALA C 201 ALA C 203 LEU C 214 MET C 221 SITE 2 AC5 5 HOH C 550 SITE 1 AC6 3 GLY C 141 LYS C 144 HOH C 624 SITE 1 AC7 7 ILE D 171 CYS D 202 ALA D 203 LEU D 214 SITE 2 AC7 7 MET D 221 HOH D 509 HOH D 579 CRYST1 40.271 118.976 83.790 90.00 91.42 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024832 0.000000 0.000616 0.00000 SCALE2 0.000000 0.008405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011938 0.00000