HEADER HYDROLASE 09-JAN-20 6TVG TITLE HUMAN CD73 (ECTO 5'-NUCLEOTIDASE) IN COMPLEX WITH AMPCP IN THE OPEN TITLE 2 STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE, ECTO (CD73), ISOFORM CRA_A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ECTO-5'-NUCLEOTIDASE; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5E, HCG_401111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EN, E5NT, ECTO-NUCLEOTIDASE, NUCLEOTIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.SCALETTI,N.STRATER REVDAT 3 24-JAN-24 6TVG 1 LINK REVDAT 2 08-APR-20 6TVG 1 JRNL REVDAT 1 26-FEB-20 6TVG 0 JRNL AUTH S.BHATTARAI,J.PIPPEL,E.SCALETTI,R.IDRIS,M.FREUNDLIEB, JRNL AUTH 2 G.ROLSHOVEN,C.RENN,S.Y.LEE,A.ABDELRAHMAN,H.ZIMMERMANN, JRNL AUTH 3 A.EL-TAYEB,C.E.MULLER,N.STRATER JRNL TITL 2-SUBSTITUTED ALPHA , BETA-METHYLENE-ADP DERIVATIVES: POTENT JRNL TITL 2 COMPETITIVE ECTO-5'-NUCLEOTIDASE (CD73) INHIBITORS WITH JRNL TITL 3 VARIABLE BINDING MODES. JRNL REF J.MED.CHEM. V. 63 2941 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32045236 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01611 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 98074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1900 - 4.5900 0.92 3126 174 0.1632 0.1819 REMARK 3 2 4.5900 - 3.6400 0.96 3107 162 0.1221 0.1417 REMARK 3 3 3.6400 - 3.1800 0.97 3100 167 0.1306 0.1475 REMARK 3 4 3.1800 - 2.8900 0.98 3118 161 0.1266 0.1598 REMARK 3 5 2.8900 - 2.6800 0.99 3120 156 0.1160 0.1688 REMARK 3 6 2.6800 - 2.5300 0.99 3160 146 0.1127 0.1508 REMARK 3 7 2.5300 - 2.4000 0.99 3103 191 0.1055 0.1350 REMARK 3 8 2.4000 - 2.2900 1.00 3112 176 0.1049 0.1530 REMARK 3 9 2.2900 - 2.2100 1.00 3132 152 0.1036 0.1592 REMARK 3 10 2.2100 - 2.1300 1.00 3144 159 0.1029 0.1450 REMARK 3 11 2.1300 - 2.0600 1.00 3135 160 0.1051 0.1450 REMARK 3 12 2.0600 - 2.0000 1.00 3090 180 0.1047 0.1362 REMARK 3 13 2.0000 - 1.9500 1.00 3140 142 0.1076 0.1541 REMARK 3 14 1.9500 - 1.9000 1.00 3122 150 0.1089 0.1551 REMARK 3 15 1.9000 - 1.8600 1.00 3128 142 0.1109 0.1671 REMARK 3 16 1.8600 - 1.8200 1.00 3100 168 0.1134 0.1690 REMARK 3 17 1.8200 - 1.7800 1.00 3131 160 0.1133 0.1647 REMARK 3 18 1.7800 - 1.7500 1.00 3092 170 0.1276 0.1532 REMARK 3 19 1.7500 - 1.7200 1.00 3106 173 0.1319 0.2095 REMARK 3 20 1.7200 - 1.6900 1.00 3096 146 0.1378 0.1964 REMARK 3 21 1.6900 - 1.6600 1.00 3103 152 0.1440 0.1967 REMARK 3 22 1.6600 - 1.6400 1.00 3107 170 0.1460 0.2181 REMARK 3 23 1.6400 - 1.6100 1.00 3097 162 0.1517 0.2090 REMARK 3 24 1.6100 - 1.5900 1.00 3115 169 0.1589 0.2263 REMARK 3 25 1.5900 - 1.5700 1.00 3025 175 0.1598 0.2031 REMARK 3 26 1.5700 - 1.5500 1.00 3094 169 0.1639 0.2026 REMARK 3 27 1.5500 - 1.5300 1.00 3091 159 0.1803 0.2430 REMARK 3 28 1.5300 - 1.5100 1.00 3115 178 0.1900 0.2520 REMARK 3 29 1.5100 - 1.4900 1.00 3060 161 0.2147 0.2439 REMARK 3 30 1.4900 - 1.4800 0.98 3009 166 0.2397 0.2864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.142 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.899 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4326 REMARK 3 ANGLE : 0.986 5918 REMARK 3 CHIRALITY : 0.081 671 REMARK 3 PLANARITY : 0.006 783 REMARK 3 DIHEDRAL : 17.808 1633 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89429 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2016 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98145 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.477 REMARK 200 RESOLUTION RANGE LOW (A) : 47.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.960 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4H2G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.8, 10 % PEG6000, 30 REMARK 280 MM AMPCP, 10 % DMSO, 10 % GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.62950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.63400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.62950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.63400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -211.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.25900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1020 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1185 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 VAL A 12 REMARK 465 GLY A 13 REMARK 465 THR A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 ASN A 17 REMARK 465 ASP A 18 REMARK 465 ASP A 19 REMARK 465 ASP A 20 REMARK 465 ASP A 21 REMARK 465 LYS A 22 REMARK 465 SER A 23 REMARK 465 PRO A 24 REMARK 465 ASP A 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 109 NE CZ NH1 NH2 REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 ARG A 297 CZ NH1 NH2 REMARK 470 LYS A 534 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER A 147 OD1 ASN A 190 1.57 REMARK 500 O SER A 147 HD21 ASN A 190 1.58 REMARK 500 O HOH A 1046 O HOH A 1047 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 88 125.67 78.26 REMARK 500 SER A 141 119.87 -166.49 REMARK 500 SER A 185 -165.64 -173.27 REMARK 500 ASN A 211 30.37 70.15 REMARK 500 HIS A 243 -49.09 82.92 REMARK 500 SER A 255 -151.19 -144.06 REMARK 500 TYR A 281 -121.84 57.73 REMARK 500 ASN A 306 147.69 -178.40 REMARK 500 ASP A 377 -178.57 -59.63 REMARK 500 ASN A 402 57.08 -95.05 REMARK 500 LYS A 536 -51.05 72.16 REMARK 500 TYR A 539 55.07 -153.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1054 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD1 REMARK 620 2 HIS A 38 NE2 114.6 REMARK 620 3 ASP A 85 OD2 92.6 94.2 REMARK 620 4 HOH A 926 O 96.2 148.3 76.0 REMARK 620 5 HOH A 927 O 96.1 89.5 168.1 95.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 ASN A 117 OD1 95.3 REMARK 620 3 HIS A 220 NE2 89.2 96.4 REMARK 620 4 HIS A 243 ND1 169.5 91.9 97.7 REMARK 620 5 HOH A 926 O 77.3 134.5 127.8 92.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 213 O REMARK 620 2 ASP A 237 OD1 144.7 REMARK 620 3 ASP A 237 OD2 92.5 52.4 REMARK 620 4 GLY A 298 O 89.7 91.5 97.7 REMARK 620 5 HOH A 853 O 86.7 128.6 174.5 87.8 REMARK 620 6 HOH A 920 O 90.0 90.4 85.1 177.2 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 751 O REMARK 620 2 HOH A 923 O 81.3 REMARK 620 3 HOH A 962 O 164.1 112.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP2 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 605 DBREF 6TVG A 27 549 UNP Q53Z63 Q53Z63_HUMAN 27 549 SEQADV 6TVG MET A 4 UNP Q53Z63 INITIATING METHIONINE SEQADV 6TVG ALA A 5 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG HIS A 6 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG HIS A 7 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG HIS A 8 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG HIS A 9 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG HIS A 10 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG HIS A 11 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG VAL A 12 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG GLY A 13 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG THR A 14 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG GLY A 15 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG SER A 16 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG ASN A 17 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG ASP A 18 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG ASP A 19 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG ASP A 20 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG ASP A 21 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG LYS A 22 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG SER A 23 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG PRO A 24 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG ASP A 25 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG PRO A 26 UNP Q53Z63 EXPRESSION TAG SEQADV 6TVG ASP A 53 UNP Q53Z63 ASN 53 CONFLICT SEQADV 6TVG SER A 145 UNP Q53Z63 LYS 145 CONFLICT SEQADV 6TVG SER A 147 UNP Q53Z63 LYS 147 CONFLICT SEQADV 6TVG ASP A 311 UNP Q53Z63 ASN 311 CONFLICT SEQADV 6TVG ASP A 333 UNP Q53Z63 ASN 333 CONFLICT SEQADV 6TVG ASP A 403 UNP Q53Z63 ASN 403 CONFLICT SEQADV 6TVG SER A 478 UNP Q53Z63 LYS 478 CONFLICT SEQRES 1 A 546 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR GLY SER SEQRES 2 A 546 ASN ASP ASP ASP ASP LYS SER PRO ASP PRO TRP GLU LEU SEQRES 3 A 546 THR ILE LEU HIS THR ASN ASP VAL HIS SER ARG LEU GLU SEQRES 4 A 546 GLN THR SER GLU ASP SER SER LYS CYS VAL ASP ALA SER SEQRES 5 A 546 ARG CYS MET GLY GLY VAL ALA ARG LEU PHE THR LYS VAL SEQRES 6 A 546 GLN GLN ILE ARG ARG ALA GLU PRO ASN VAL LEU LEU LEU SEQRES 7 A 546 ASP ALA GLY ASP GLN TYR GLN GLY THR ILE TRP PHE THR SEQRES 8 A 546 VAL TYR LYS GLY ALA GLU VAL ALA HIS PHE MET ASN ALA SEQRES 9 A 546 LEU ARG TYR ASP ALA MET ALA LEU GLY ASN HIS GLU PHE SEQRES 10 A 546 ASP ASN GLY VAL GLU GLY LEU ILE GLU PRO LEU LEU LYS SEQRES 11 A 546 GLU ALA LYS PHE PRO ILE LEU SER ALA ASN ILE SER ALA SEQRES 12 A 546 SER GLY PRO LEU ALA SER GLN ILE SER GLY LEU TYR LEU SEQRES 13 A 546 PRO TYR LYS VAL LEU PRO VAL GLY ASP GLU VAL VAL GLY SEQRES 14 A 546 ILE VAL GLY TYR THR SER LYS GLU THR PRO PHE LEU SER SEQRES 15 A 546 ASN PRO GLY THR ASN LEU VAL PHE GLU ASP GLU ILE THR SEQRES 16 A 546 ALA LEU GLN PRO GLU VAL ASP LYS LEU LYS THR LEU ASN SEQRES 17 A 546 VAL ASN LYS ILE ILE ALA LEU GLY HIS SER GLY PHE GLU SEQRES 18 A 546 MET ASP LYS LEU ILE ALA GLN LYS VAL ARG GLY VAL ASP SEQRES 19 A 546 VAL VAL VAL GLY GLY HIS SER ASN THR PHE LEU TYR THR SEQRES 20 A 546 GLY ASN PRO PRO SER LYS GLU VAL PRO ALA GLY LYS TYR SEQRES 21 A 546 PRO PHE ILE VAL THR SER ASP ASP GLY ARG LYS VAL PRO SEQRES 22 A 546 VAL VAL GLN ALA TYR ALA PHE GLY LYS TYR LEU GLY TYR SEQRES 23 A 546 LEU LYS ILE GLU PHE ASP GLU ARG GLY ASN VAL ILE SER SEQRES 24 A 546 SER HIS GLY ASN PRO ILE LEU LEU ASP SER SER ILE PRO SEQRES 25 A 546 GLU ASP PRO SER ILE LYS ALA ASP ILE ASN LYS TRP ARG SEQRES 26 A 546 ILE LYS LEU ASP ASP TYR SER THR GLN GLU LEU GLY LYS SEQRES 27 A 546 THR ILE VAL TYR LEU ASP GLY SER SER GLN SER CYS ARG SEQRES 28 A 546 PHE ARG GLU CYS ASN MET GLY ASN LEU ILE CYS ASP ALA SEQRES 29 A 546 MET ILE ASN ASN ASN LEU ARG HIS ALA ASP GLU MET PHE SEQRES 30 A 546 TRP ASN HIS VAL SER MET CYS ILE LEU ASN GLY GLY GLY SEQRES 31 A 546 ILE ARG SER PRO ILE ASP GLU ARG ASN ASP GLY THR ILE SEQRES 32 A 546 THR TRP GLU ASN LEU ALA ALA VAL LEU PRO PHE GLY GLY SEQRES 33 A 546 THR PHE ASP LEU VAL GLN LEU LYS GLY SER THR LEU LYS SEQRES 34 A 546 LYS ALA PHE GLU HIS SER VAL HIS ARG TYR GLY GLN SER SEQRES 35 A 546 THR GLY GLU PHE LEU GLN VAL GLY GLY ILE HIS VAL VAL SEQRES 36 A 546 TYR ASP LEU SER ARG LYS PRO GLY ASP ARG VAL VAL LYS SEQRES 37 A 546 LEU ASP VAL LEU CYS THR SER CYS ARG VAL PRO SER TYR SEQRES 38 A 546 ASP PRO LEU LYS MET ASP GLU VAL TYR LYS VAL ILE LEU SEQRES 39 A 546 PRO ASN PHE LEU ALA ASN GLY GLY ASP GLY PHE GLN MET SEQRES 40 A 546 ILE LYS ASP GLU LEU LEU ARG HIS ASP SER GLY ASP GLN SEQRES 41 A 546 ASP ILE ASN VAL VAL SER THR TYR ILE SER LYS MET LYS SEQRES 42 A 546 VAL ILE TYR PRO ALA VAL GLU GLY ARG ILE LYS PHE SER HET ZN A 601 1 HET ZN A 602 1 HET AP2 A 603 43 HET NA A 604 1 HET CA A 605 1 HETNAM ZN ZINC ION HETNAM AP2 PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM NA SODIUM ION HETNAM CA CALCIUM ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 AP2 C11 H17 N5 O9 P2 FORMUL 5 NA NA 1+ FORMUL 6 CA CA 2+ FORMUL 7 HOH *549(H2 O) HELIX 1 AA1 ASP A 53 CYS A 57 5 5 HELIX 2 AA2 GLY A 60 GLU A 75 1 16 HELIX 3 AA3 THR A 90 LYS A 97 1 8 HELIX 4 AA4 GLY A 98 ARG A 109 1 12 HELIX 5 AA5 GLY A 116 ASP A 121 5 6 HELIX 6 AA6 ASN A 122 GLU A 129 1 8 HELIX 7 AA7 GLY A 148 SER A 155 1 8 HELIX 8 AA8 GLU A 180 SER A 185 1 6 HELIX 9 AA9 ASP A 195 LEU A 210 1 16 HELIX 10 AB1 GLY A 222 VAL A 233 1 12 HELIX 11 AB2 ASP A 317 THR A 336 1 20 HELIX 12 AB3 SER A 349 ARG A 354 1 6 HELIX 13 AB4 CYS A 358 ASN A 372 1 15 HELIX 14 AB5 GLY A 392 ILE A 394 5 3 HELIX 15 AB6 TRP A 408 LEU A 415 1 8 HELIX 16 AB7 GLY A 428 VAL A 439 1 12 HELIX 17 AB8 ASN A 499 ASN A 503 1 5 HELIX 18 AB9 GLY A 504 GLY A 507 5 4 HELIX 19 AC1 PHE A 508 LEU A 515 1 8 HELIX 20 AC2 ASP A 524 LYS A 536 1 13 SHEET 1 AA1 6 ILE A 139 LEU A 140 0 SHEET 2 AA1 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 AA1 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 AA1 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 AA1 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 AA1 6 VAL A 300 GLY A 305 -1 O ILE A 301 N GLU A 293 SHEET 1 AA2 6 ILE A 139 LEU A 140 0 SHEET 2 AA2 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 AA2 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 AA2 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 AA2 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 AA2 6 ILE A 308 LEU A 309 -1 O ILE A 308 N LEU A 287 SHEET 1 AA3 2 ILE A 144 SER A 145 0 SHEET 2 AA3 2 VAL A 192 PHE A 193 -1 O VAL A 192 N SER A 145 SHEET 1 AA4 6 TYR A 161 VAL A 166 0 SHEET 2 AA4 6 GLU A 169 THR A 177 -1 O VAL A 171 N LEU A 164 SHEET 3 AA4 6 ILE A 215 HIS A 220 1 O ILE A 216 N GLY A 172 SHEET 4 AA4 6 VAL A 238 VAL A 240 1 O VAL A 240 N ALA A 217 SHEET 5 AA4 6 LYS A 274 VAL A 278 1 O VAL A 278 N VAL A 239 SHEET 6 AA4 6 PHE A 265 THR A 268 -1 N VAL A 267 O VAL A 275 SHEET 1 AA5 3 THR A 405 THR A 407 0 SHEET 2 AA5 3 GLU A 338 THR A 342 -1 N LEU A 339 O ILE A 406 SHEET 3 AA5 3 VAL A 537 ILE A 538 1 O ILE A 538 N LYS A 341 SHEET 1 AA6 5 LEU A 450 GLY A 453 0 SHEET 2 AA6 5 MET A 386 ASN A 390 -1 N LEU A 389 O GLN A 451 SHEET 3 AA6 5 VAL A 492 PRO A 498 1 O ILE A 496 N MET A 386 SHEET 4 AA6 5 THR A 420 LYS A 427 -1 N LEU A 426 O TYR A 493 SHEET 5 AA6 5 ARG A 517 GLN A 523 -1 O ASP A 519 N LEU A 423 SHEET 1 AA7 4 TYR A 484 PRO A 486 0 SHEET 2 AA7 4 VAL A 469 LEU A 475 -1 N VAL A 474 O ASP A 485 SHEET 3 AA7 4 ILE A 455 TYR A 459 -1 N HIS A 456 O ASP A 473 SHEET 4 AA7 4 ILE A 546 PHE A 548 1 O LYS A 547 N TYR A 459 SSBOND 1 CYS A 51 CYS A 57 1555 1555 2.04 SSBOND 2 CYS A 353 CYS A 358 1555 1555 2.07 SSBOND 3 CYS A 365 CYS A 387 1555 1555 2.05 SSBOND 4 CYS A 476 CYS A 479 1555 1555 2.06 LINK OD1 ASP A 36 ZN ZN A 602 1555 1555 2.03 LINK NE2 HIS A 38 ZN ZN A 602 1555 1555 2.06 LINK OD2 ASP A 85 ZN ZN A 601 1555 1555 2.24 LINK OD2 ASP A 85 ZN ZN A 602 1555 1555 2.25 LINK OD1 ASN A 117 ZN ZN A 601 1555 1555 2.05 LINK O ASN A 213 CA CA A 605 1555 1555 2.34 LINK NE2 HIS A 220 ZN ZN A 601 1555 1555 2.01 LINK OD1 ASP A 237 CA CA A 605 1555 1555 2.52 LINK OD2 ASP A 237 CA CA A 605 1555 1555 2.48 LINK ND1 HIS A 243 ZN ZN A 601 1555 1555 2.13 LINK O GLY A 298 CA CA A 605 1555 1555 2.47 LINK ZN ZN A 601 O HOH A 926 1555 1555 1.97 LINK ZN ZN A 602 O HOH A 926 1555 1555 2.02 LINK ZN ZN A 602 O HOH A 927 1555 1555 2.15 LINK NA NA A 604 O HOH A 751 1555 1555 3.13 LINK NA NA A 604 O HOH A 923 1555 1555 3.08 LINK NA NA A 604 O HOH A 962 1555 1555 3.04 LINK CA CA A 605 O HOH A 853 1555 1555 2.37 LINK CA CA A 605 O HOH A 920 1555 1555 2.40 CISPEP 1 GLU A 129 PRO A 130 0 10.46 CISPEP 2 TYR A 263 PRO A 264 0 -6.56 SITE 1 AC1 7 ASP A 36 ASP A 85 ASN A 117 HIS A 220 SITE 2 AC1 7 HIS A 243 ZN A 602 HOH A 926 SITE 1 AC2 7 ASP A 36 HIS A 38 ASP A 85 SER A 520 SITE 2 AC2 7 ZN A 601 HOH A 926 HOH A 927 SITE 1 AC3 15 ASP A 270 ARG A 354 ASN A 390 GLY A 392 SITE 2 AC3 15 GLY A 393 ARG A 395 PHE A 417 GLY A 447 SITE 3 AC3 15 PHE A 500 ASP A 506 HOH A 738 HOH A 753 SITE 4 AC3 15 HOH A 942 HOH A1175 HOH A1207 SITE 1 AC4 4 PHE A 223 GLU A 224 HOH A 923 HOH A 962 SITE 1 AC5 5 ASN A 213 ASP A 237 GLY A 298 HOH A 853 SITE 2 AC5 5 HOH A 920 CRYST1 67.259 131.268 66.213 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015103 0.00000