HEADER NUCLEAR PROTEIN 10-JAN-20 6TVO TITLE HUMAN CRM1-RANGTP IN COMPLEX WITH LEPTOMYCIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ANDROGEN RECEPTOR-ASSOCIATED PROTEIN 24,GTPASE RAN,RAS-LIKE COMPND 5 PROTEIN TC4,RAS-RELATED NUCLEAR PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: EXPORTIN-1; COMPND 10 CHAIN: A; COMPND 11 SYNONYM: EXP1,CHROMOSOME REGION MAINTENANCE 1 PROTEIN HOMOLOG; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAN, ARA24, OK/SW-CL.81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: XPO1, CRM1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRM1, INHIBITOR, COMPLEX, EXPORTIN 1, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SHAIKHQASEM,R.FICNER REVDAT 4 24-JAN-24 6TVO 1 REMARK REVDAT 3 05-AUG-20 6TVO 1 JRNL REVDAT 2 15-JUL-20 6TVO 1 JRNL REVDAT 1 08-JUL-20 6TVO 0 JRNL AUTH A.SHAIKHQASEM,A.DICKMANNS,P.NEUMANN,R.FICNER JRNL TITL CHARACTERIZATION OF INHIBITION REVEALS DISTINCTIVE JRNL TITL 2 PROPERTIES FOR HUMAN ANDSACCHAROMYCES CEREVISIAECRM1. JRNL REF J.MED.CHEM. V. 63 7545 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32585100 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00143 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.15 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 36094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.9100 - 7.5244 0.99 2779 140 0.1545 0.1616 REMARK 3 2 7.5244 - 5.9732 1.00 2712 137 0.2145 0.2465 REMARK 3 3 5.9732 - 5.2183 1.00 2647 141 0.2204 0.2502 REMARK 3 4 5.2183 - 4.7413 0.99 2634 145 0.2013 0.2256 REMARK 3 5 4.7413 - 4.4015 0.99 2643 132 0.1932 0.2202 REMARK 3 6 4.4015 - 4.1420 0.99 2627 132 0.2138 0.2232 REMARK 3 7 4.1420 - 3.9346 1.00 2617 148 0.2260 0.2453 REMARK 3 8 3.9346 - 3.7634 1.00 2621 142 0.2564 0.2864 REMARK 3 9 3.7634 - 3.6185 1.00 2612 122 0.2913 0.2973 REMARK 3 10 3.6185 - 3.4936 1.00 2606 145 0.3124 0.3382 REMARK 3 11 3.4936 - 3.3844 1.00 2615 135 0.3174 0.3190 REMARK 3 12 3.3844 - 3.2876 1.00 2611 143 0.3478 0.3325 REMARK 3 13 3.2876 - 3.2011 0.99 2557 151 0.4194 0.4130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 101.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -12.9799 -19.2589 -70.5221 REMARK 3 T TENSOR REMARK 3 T11: 0.9359 T22: 0.8390 REMARK 3 T33: 0.9381 T12: -0.0409 REMARK 3 T13: -0.0336 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 1.1273 L22: 0.4043 REMARK 3 L33: 0.9372 L12: -0.0589 REMARK 3 L13: -0.0020 L23: -0.0365 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: 0.1207 S13: 0.0842 REMARK 3 S21: -0.0001 S22: 0.0197 S23: 0.0840 REMARK 3 S31: 0.0409 S32: -0.0227 S33: 0.0305 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -11.8695 -33.0201 -76.3255 REMARK 3 T TENSOR REMARK 3 T11: 1.0400 T22: 0.9183 REMARK 3 T33: 1.0613 T12: -0.0822 REMARK 3 T13: -0.0668 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.9337 L22: 1.4743 REMARK 3 L33: 2.6740 L12: -0.6686 REMARK 3 L13: 0.4373 L23: 1.0357 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.0140 S13: -0.2408 REMARK 3 S21: -0.0011 S22: 0.1386 S23: 0.1975 REMARK 3 S31: 0.3402 S32: -0.0656 S33: -0.0822 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292105574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36131 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 73.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.799 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.89 REMARK 200 R MERGE FOR SHELL (I) : 0.90200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M SODIUM L-GLUTAMATE, 0.02M DL REMARK 280 -ALANINE, 0.02M GLYCINE, 0.02M DL-LYSINE HCL, 0.02 M DL-SERINE, REMARK 280 10%W/V PEG 8000, 20% V/V ETHYLENE GLYCOL, 0.1M BICINE /TRIZMA REMARK 280 BASE PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.14500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.42150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.14500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.42150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.14500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.66500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.42150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.14500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.66500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.42150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 ILE A 4 REMARK 465 MET A 5 REMARK 465 THR A 6 REMARK 465 MET A 7 REMARK 465 SER A 389 REMARK 465 ALA A 390 REMARK 465 SER A 391 REMARK 465 PRO A 392 REMARK 465 LEU A 393 REMARK 465 LEU A 394 REMARK 465 SER A 395 REMARK 465 GLY A 396 REMARK 465 SER A 397 REMARK 465 GLN A 398 REMARK 465 HIS A 399 REMARK 465 PHE A 400 REMARK 465 ASP A 401 REMARK 465 ASP A 1032 REMARK 465 LEU A 1033 REMARK 465 PHE A 1034 REMARK 465 LEU A 1035 REMARK 465 GLU A 1036 REMARK 465 ARG A 1037 REMARK 465 SER A 1038 REMARK 465 ARG A 1039 REMARK 465 SER A 1040 REMARK 465 HIS A 1041 REMARK 465 HIS A 1042 REMARK 465 HIS A 1043 REMARK 465 HIS A 1044 REMARK 465 HIS A 1045 REMARK 465 HIS A 1046 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 113 CD REMARK 480 LYS B 159 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 111 -71.52 -87.28 REMARK 500 ASN B 114 79.31 -153.51 REMARK 500 ARG B 140 -72.08 -50.62 REMARK 500 ASP B 148 63.17 -111.49 REMARK 500 PRO B 172 7.48 -67.10 REMARK 500 ALA A 59 -112.51 45.29 REMARK 500 LYS A 122 -128.21 52.83 REMARK 500 GLU A 141 30.85 -153.09 REMARK 500 TRP A 146 59.14 -155.74 REMARK 500 LYS A 245 1.50 -67.56 REMARK 500 MET A 259 -9.17 -59.51 REMARK 500 HIS A 333 32.71 -145.05 REMARK 500 LYS A 339 32.18 -86.90 REMARK 500 ASN A 342 3.85 -65.25 REMARK 500 SER A 387 -159.51 -88.61 REMARK 500 MET A 412 -1.33 -143.57 REMARK 500 ASP A 468 97.32 -169.07 REMARK 500 MET A 573 4.67 -67.20 REMARK 500 PRO A 705 -8.72 -57.48 REMARK 500 ASN A 767 49.45 -103.76 REMARK 500 ASP A 768 88.29 -161.31 REMARK 500 HIS A 814 -1.64 -50.31 REMARK 500 GLU A1028 -129.94 55.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 24 OG1 REMARK 620 2 THR B 42 OG1 80.0 REMARK 620 3 GTP B 201 O3G 156.4 103.5 REMARK 620 4 GTP B 201 O1B 98.0 172.4 81.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMB A 1101 DBREF 6TVO B 1 180 UNP P62826 RAN_HUMAN 1 180 DBREF 6TVO A 1 1036 UNP O14980 XPO1_HUMAN 1 1036 SEQADV 6TVO MET B -1 UNP P62826 INITIATING METHIONINE SEQADV 6TVO GLY B 0 UNP P62826 EXPRESSION TAG SEQADV 6TVO LEU B 69 UNP P62826 GLN 69 ENGINEERED MUTATION SEQADV 6TVO MET A -13 UNP O14980 INITIATING METHIONINE SEQADV 6TVO ALA A -12 UNP O14980 EXPRESSION TAG SEQADV 6TVO SER A -11 UNP O14980 EXPRESSION TAG SEQADV 6TVO MET A -10 UNP O14980 EXPRESSION TAG SEQADV 6TVO THR A -9 UNP O14980 EXPRESSION TAG SEQADV 6TVO GLY A -8 UNP O14980 EXPRESSION TAG SEQADV 6TVO GLY A -7 UNP O14980 EXPRESSION TAG SEQADV 6TVO GLN A -6 UNP O14980 EXPRESSION TAG SEQADV 6TVO GLN A -5 UNP O14980 EXPRESSION TAG SEQADV 6TVO MET A -4 UNP O14980 EXPRESSION TAG SEQADV 6TVO GLY A -3 UNP O14980 EXPRESSION TAG SEQADV 6TVO ARG A -2 UNP O14980 EXPRESSION TAG SEQADV 6TVO GLY A -1 UNP O14980 EXPRESSION TAG SEQADV 6TVO SER A 0 UNP O14980 EXPRESSION TAG SEQADV 6TVO ALA A 430 UNP O14980 VAL 430 ENGINEERED MUTATION SEQADV 6TVO ALA A 431 UNP O14980 LEU 431 ENGINEERED MUTATION SEQADV 6TVO ALA A 432 UNP O14980 VAL 432 ENGINEERED MUTATION SEQADV 6TVO ARG A 1037 UNP O14980 EXPRESSION TAG SEQADV 6TVO SER A 1038 UNP O14980 EXPRESSION TAG SEQADV 6TVO ARG A 1039 UNP O14980 EXPRESSION TAG SEQADV 6TVO SER A 1040 UNP O14980 EXPRESSION TAG SEQADV 6TVO HIS A 1041 UNP O14980 EXPRESSION TAG SEQADV 6TVO HIS A 1042 UNP O14980 EXPRESSION TAG SEQADV 6TVO HIS A 1043 UNP O14980 EXPRESSION TAG SEQADV 6TVO HIS A 1044 UNP O14980 EXPRESSION TAG SEQADV 6TVO HIS A 1045 UNP O14980 EXPRESSION TAG SEQADV 6TVO HIS A 1046 UNP O14980 EXPRESSION TAG SEQRES 1 B 182 MET GLY MET ALA ALA GLN GLY GLU PRO GLN VAL GLN PHE SEQRES 2 B 182 LYS LEU VAL LEU VAL GLY ASP GLY GLY THR GLY LYS THR SEQRES 3 B 182 THR PHE VAL LYS ARG HIS LEU THR GLY GLU PHE GLU LYS SEQRES 4 B 182 LYS TYR VAL ALA THR LEU GLY VAL GLU VAL HIS PRO LEU SEQRES 5 B 182 VAL PHE HIS THR ASN ARG GLY PRO ILE LYS PHE ASN VAL SEQRES 6 B 182 TRP ASP THR ALA GLY LEU GLU LYS PHE GLY GLY LEU ARG SEQRES 7 B 182 ASP GLY TYR TYR ILE GLN ALA GLN CYS ALA ILE ILE MET SEQRES 8 B 182 PHE ASP VAL THR SER ARG VAL THR TYR LYS ASN VAL PRO SEQRES 9 B 182 ASN TRP HIS ARG ASP LEU VAL ARG VAL CYS GLU ASN ILE SEQRES 10 B 182 PRO ILE VAL LEU CYS GLY ASN LYS VAL ASP ILE LYS ASP SEQRES 11 B 182 ARG LYS VAL LYS ALA LYS SER ILE VAL PHE HIS ARG LYS SEQRES 12 B 182 LYS ASN LEU GLN TYR TYR ASP ILE SER ALA LYS SER ASN SEQRES 13 B 182 TYR ASN PHE GLU LYS PRO PHE LEU TRP LEU ALA ARG LYS SEQRES 14 B 182 LEU ILE GLY ASP PRO ASN LEU GLU PHE VAL ALA MET PRO SEQRES 1 A 1060 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 1060 SER MET PRO ALA ILE MET THR MET LEU ALA ASP HIS ALA SEQRES 3 A 1060 ALA ARG GLN LEU LEU ASP PHE SER GLN LYS LEU ASP ILE SEQRES 4 A 1060 ASN LEU LEU ASP ASN VAL VAL ASN CYS LEU TYR HIS GLY SEQRES 5 A 1060 GLU GLY ALA GLN GLN ARG MET ALA GLN GLU VAL LEU THR SEQRES 6 A 1060 HIS LEU LYS GLU HIS PRO ASP ALA TRP THR ARG VAL ASP SEQRES 7 A 1060 THR ILE LEU GLU PHE SER GLN ASN MET ASN THR LYS TYR SEQRES 8 A 1060 TYR GLY LEU GLN ILE LEU GLU ASN VAL ILE LYS THR ARG SEQRES 9 A 1060 TRP LYS ILE LEU PRO ARG ASN GLN CYS GLU GLY ILE LYS SEQRES 10 A 1060 LYS TYR VAL VAL GLY LEU ILE ILE LYS THR SER SER ASP SEQRES 11 A 1060 PRO THR CYS VAL GLU LYS GLU LYS VAL TYR ILE GLY LYS SEQRES 12 A 1060 LEU ASN MET ILE LEU VAL GLN ILE LEU LYS GLN GLU TRP SEQRES 13 A 1060 PRO LYS HIS TRP PRO THR PHE ILE SER ASP ILE VAL GLY SEQRES 14 A 1060 ALA SER ARG THR SER GLU SER LEU CYS GLN ASN ASN MET SEQRES 15 A 1060 VAL ILE LEU LYS LEU LEU SER GLU GLU VAL PHE ASP PHE SEQRES 16 A 1060 SER SER GLY GLN ILE THR GLN VAL LYS SER LYS HIS LEU SEQRES 17 A 1060 LYS ASP SER MET CYS ASN GLU PHE SER GLN ILE PHE GLN SEQRES 18 A 1060 LEU CYS GLN PHE VAL MET GLU ASN SER GLN ASN ALA PRO SEQRES 19 A 1060 LEU VAL HIS ALA THR LEU GLU THR LEU LEU ARG PHE LEU SEQRES 20 A 1060 ASN TRP ILE PRO LEU GLY TYR ILE PHE GLU THR LYS LEU SEQRES 21 A 1060 ILE SER THR LEU ILE TYR LYS PHE LEU ASN VAL PRO MET SEQRES 22 A 1060 PHE ARG ASN VAL SER LEU LYS CYS LEU THR GLU ILE ALA SEQRES 23 A 1060 GLY VAL SER VAL SER GLN TYR GLU GLU GLN PHE VAL THR SEQRES 24 A 1060 LEU PHE THR LEU THR MET MET GLN LEU LYS GLN MET LEU SEQRES 25 A 1060 PRO LEU ASN THR ASN ILE ARG LEU ALA TYR SER ASN GLY SEQRES 26 A 1060 LYS ASP ASP GLU GLN ASN PHE ILE GLN ASN LEU SER LEU SEQRES 27 A 1060 PHE LEU CYS THR PHE LEU LYS GLU HIS ASP GLN LEU ILE SEQRES 28 A 1060 GLU LYS ARG LEU ASN LEU ARG GLU THR LEU MET GLU ALA SEQRES 29 A 1060 LEU HIS TYR MET LEU LEU VAL SER GLU VAL GLU GLU THR SEQRES 30 A 1060 GLU ILE PHE LYS ILE CYS LEU GLU TYR TRP ASN HIS LEU SEQRES 31 A 1060 ALA ALA GLU LEU TYR ARG GLU SER PRO PHE SER THR SER SEQRES 32 A 1060 ALA SER PRO LEU LEU SER GLY SER GLN HIS PHE ASP VAL SEQRES 33 A 1060 PRO PRO ARG ARG GLN LEU TYR LEU PRO MET LEU PHE LYS SEQRES 34 A 1060 VAL ARG LEU LEU MET VAL SER ARG MET ALA LYS PRO GLU SEQRES 35 A 1060 GLU ALA ALA ALA VAL GLU ASN ASP GLN GLY GLU VAL VAL SEQRES 36 A 1060 ARG GLU PHE MET LYS ASP THR ASP SER ILE ASN LEU TYR SEQRES 37 A 1060 LYS ASN MET ARG GLU THR LEU VAL TYR LEU THR HIS LEU SEQRES 38 A 1060 ASP TYR VAL ASP THR GLU ARG ILE MET THR GLU LYS LEU SEQRES 39 A 1060 HIS ASN GLN VAL ASN GLY THR GLU TRP SER TRP LYS ASN SEQRES 40 A 1060 LEU ASN THR LEU CYS TRP ALA ILE GLY SER ILE SER GLY SEQRES 41 A 1060 ALA MET HIS GLU GLU ASP GLU LYS ARG PHE LEU VAL THR SEQRES 42 A 1060 VAL ILE LYS ASP LEU LEU GLY LEU CYS GLU GLN LYS ARG SEQRES 43 A 1060 GLY LYS ASP ASN LYS ALA ILE ILE ALA SER ASN ILE MET SEQRES 44 A 1060 TYR ILE VAL GLY GLN TYR PRO ARG PHE LEU ARG ALA HIS SEQRES 45 A 1060 TRP LYS PHE LEU LYS THR VAL VAL ASN LYS LEU PHE GLU SEQRES 46 A 1060 PHE MET HIS GLU THR HIS ASP GLY VAL GLN ASP MET ALA SEQRES 47 A 1060 CYS ASP THR PHE ILE LYS ILE ALA GLN LYS CYS ARG ARG SEQRES 48 A 1060 HIS PHE VAL GLN VAL GLN VAL GLY GLU VAL MET PRO PHE SEQRES 49 A 1060 ILE ASP GLU ILE LEU ASN ASN ILE ASN THR ILE ILE CYS SEQRES 50 A 1060 ASP LEU GLN PRO GLN GLN VAL HIS THR PHE TYR GLU ALA SEQRES 51 A 1060 VAL GLY TYR MET ILE GLY ALA GLN THR ASP GLN THR VAL SEQRES 52 A 1060 GLN GLU HIS LEU ILE GLU LYS TYR MET LEU LEU PRO ASN SEQRES 53 A 1060 GLN VAL TRP ASP SER ILE ILE GLN GLN ALA THR LYS ASN SEQRES 54 A 1060 VAL ASP ILE LEU LYS ASP PRO GLU THR VAL LYS GLN LEU SEQRES 55 A 1060 GLY SER ILE LEU LYS THR ASN VAL ARG ALA CYS LYS ALA SEQRES 56 A 1060 VAL GLY HIS PRO PHE VAL ILE GLN LEU GLY ARG ILE TYR SEQRES 57 A 1060 LEU ASP MET LEU ASN VAL TYR LYS CYS LEU SER GLU ASN SEQRES 58 A 1060 ILE SER ALA ALA ILE GLN ALA ASN GLY GLU MET VAL THR SEQRES 59 A 1060 LYS GLN PRO LEU ILE ARG SER MET ARG THR VAL LYS ARG SEQRES 60 A 1060 GLU THR LEU LYS LEU ILE SER GLY TRP VAL SER ARG SER SEQRES 61 A 1060 ASN ASP PRO GLN MET VAL ALA GLU ASN PHE VAL PRO PRO SEQRES 62 A 1060 LEU LEU ASP ALA VAL LEU ILE ASP TYR GLN ARG ASN VAL SEQRES 63 A 1060 PRO ALA ALA ARG GLU PRO GLU VAL LEU SER THR MET ALA SEQRES 64 A 1060 ILE ILE VAL ASN LYS LEU GLY GLY HIS ILE THR ALA GLU SEQRES 65 A 1060 ILE PRO GLN ILE PHE ASP ALA VAL PHE GLU CYS THR LEU SEQRES 66 A 1060 ASN MET ILE ASN LYS ASP PHE GLU GLU TYR PRO GLU HIS SEQRES 67 A 1060 ARG THR ASN PHE PHE LEU LEU LEU GLN ALA VAL ASN SER SEQRES 68 A 1060 HIS CYS PHE PRO ALA PHE LEU ALA ILE PRO PRO THR GLN SEQRES 69 A 1060 PHE LYS LEU VAL LEU ASP SER ILE ILE TRP ALA PHE LYS SEQRES 70 A 1060 HIS THR MET ARG ASN VAL ALA ASP THR GLY LEU GLN ILE SEQRES 71 A 1060 LEU PHE THR LEU LEU GLN ASN VAL ALA GLN GLU GLU ALA SEQRES 72 A 1060 ALA ALA GLN SER PHE TYR GLN THR TYR PHE CYS ASP ILE SEQRES 73 A 1060 LEU GLN HIS ILE PHE SER VAL VAL THR ASP THR SER HIS SEQRES 74 A 1060 THR ALA GLY LEU THR MET HIS ALA SER ILE LEU ALA TYR SEQRES 75 A 1060 MET PHE ASN LEU VAL GLU GLU GLY LYS ILE SER THR SER SEQRES 76 A 1060 LEU ASN PRO GLY ASN PRO VAL ASN ASN GLN ILE PHE LEU SEQRES 77 A 1060 GLN GLU TYR VAL ALA ASN LEU LEU LYS SER ALA PHE PRO SEQRES 78 A 1060 HIS LEU GLN ASP ALA GLN VAL LYS LEU PHE VAL THR GLY SEQRES 79 A 1060 LEU PHE SER LEU ASN GLN ASP ILE PRO ALA PHE LYS GLU SEQRES 80 A 1060 HIS LEU ARG ASP PHE LEU VAL GLN ILE LYS GLU PHE ALA SEQRES 81 A 1060 GLY GLU ASP THR SER ASP LEU PHE LEU GLU ARG SER ARG SEQRES 82 A 1060 SER HIS HIS HIS HIS HIS HIS HET GTP B 201 32 HET MG B 202 1 HET LMB A1101 40 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM LMB LEPTOMYCIN B, BOUND FORM FORMUL 3 GTP C10 H16 N5 O14 P3 FORMUL 4 MG MG 2+ FORMUL 5 LMB C33 H52 O7 HELIX 1 AA1 GLY B 22 GLY B 33 1 12 HELIX 2 AA2 ASP B 77 ILE B 81 5 5 HELIX 3 AA3 SER B 94 ASN B 100 1 7 HELIX 4 AA4 ASN B 100 CYS B 112 1 13 HELIX 5 AA5 LYS B 132 ILE B 136 5 5 HELIX 6 AA6 GLU B 158 GLY B 170 1 13 HELIX 7 AA7 ALA A 9 LEU A 16 1 8 HELIX 8 AA8 ASP A 24 GLY A 38 1 15 HELIX 9 AA9 GLY A 40 HIS A 56 1 17 HELIX 10 AB1 ASP A 58 THR A 61 5 4 HELIX 11 AB2 ARG A 62 SER A 70 1 9 HELIX 12 AB3 ASN A 72 ARG A 90 1 19 HELIX 13 AB4 TRP A 91 LEU A 94 5 4 HELIX 14 AB5 PRO A 95 ASP A 116 1 22 HELIX 15 AB6 PRO A 117 VAL A 120 5 4 HELIX 16 AB7 GLU A 123 TRP A 146 1 24 HELIX 17 AB8 THR A 148 SER A 160 1 13 HELIX 18 AB9 SER A 160 ASP A 180 1 21 HELIX 19 AC1 THR A 187 GLU A 201 1 15 HELIX 20 AC2 GLU A 201 SER A 216 1 16 HELIX 21 AC3 ASN A 218 ILE A 236 1 19 HELIX 22 AC4 LEU A 238 GLU A 243 1 6 HELIX 23 AC5 LYS A 245 PHE A 254 1 10 HELIX 24 AC6 VAL A 257 MET A 259 5 3 HELIX 25 AC7 PHE A 260 VAL A 274 1 15 HELIX 26 AC8 TYR A 279 LEU A 298 1 20 HELIX 27 AC9 ASN A 303 GLY A 311 1 9 HELIX 28 AD1 LYS A 312 LYS A 339 1 28 HELIX 29 AD2 ARG A 340 ASN A 342 5 3 HELIX 30 AD3 LEU A 343 GLU A 359 1 17 HELIX 31 AD4 GLU A 362 SER A 384 1 23 HELIX 32 AD5 PRO A 403 ARG A 423 1 21 HELIX 33 AD6 THR A 448 ASP A 468 1 21 HELIX 34 AD7 ASP A 468 ASN A 485 1 18 HELIX 35 AD8 SER A 490 ILE A 504 1 15 HELIX 36 AD9 HIS A 509 LYS A 531 1 23 HELIX 37 AE1 GLY A 533 GLN A 550 1 18 HELIX 38 AE2 TYR A 551 HIS A 558 1 8 HELIX 39 AE3 HIS A 558 MET A 573 1 16 HELIX 40 AE4 GLY A 579 CYS A 595 1 17 HELIX 41 AE5 ARG A 596 GLN A 601 1 6 HELIX 42 AE6 PRO A 609 ASN A 617 1 9 HELIX 43 AE7 ASN A 617 ILE A 622 1 6 HELIX 44 AE8 GLN A 626 GLN A 644 1 19 HELIX 45 AE9 ASP A 646 MET A 658 1 13 HELIX 46 AF1 MET A 658 ASN A 675 1 18 HELIX 47 AF2 VAL A 676 LYS A 680 5 5 HELIX 48 AF3 ASP A 681 GLY A 703 1 23 HELIX 49 AF4 PHE A 706 GLY A 736 1 31 HELIX 50 AF5 GLU A 737 LYS A 741 5 5 HELIX 51 AF6 GLN A 742 ARG A 765 1 24 HELIX 52 AF7 ASP A 768 PHE A 776 1 9 HELIX 53 AF8 PHE A 776 VAL A 784 1 9 HELIX 54 AF9 VAL A 784 ASN A 791 1 8 HELIX 55 AG1 VAL A 792 GLU A 797 5 6 HELIX 56 AG2 PRO A 798 GLY A 812 1 15 HELIX 57 AG3 GLY A 813 ALA A 817 5 5 HELIX 58 AG4 GLU A 818 ASN A 832 1 15 HELIX 59 AG5 TYR A 841 CYS A 859 1 19 HELIX 60 AG6 CYS A 859 ALA A 865 1 7 HELIX 61 AG7 PRO A 867 LYS A 883 1 17 HELIX 62 AG8 MET A 886 GLU A 907 1 22 HELIX 63 AG9 GLU A 907 THR A 931 1 25 HELIX 64 AH1 HIS A 935 ALA A 937 5 3 HELIX 65 AH2 GLY A 938 GLU A 955 1 18 HELIX 66 AH3 ASN A 969 PHE A 986 1 18 HELIX 67 AH4 GLN A 990 LEU A 1004 1 15 HELIX 68 AH5 ASP A 1007 ILE A 1022 1 16 SHEET 1 AA1 6 VAL B 45 THR B 54 0 SHEET 2 AA1 6 GLY B 57 THR B 66 -1 O PHE B 61 N LEU B 50 SHEET 3 AA1 6 VAL B 9 GLY B 17 1 N LEU B 13 O TRP B 64 SHEET 4 AA1 6 CYS B 85 ASP B 91 1 O ILE B 87 N VAL B 16 SHEET 5 AA1 6 ILE B 117 ASN B 122 1 O VAL B 118 N ILE B 88 SHEET 6 AA1 6 GLN B 145 TYR B 147 1 O GLN B 145 N LEU B 119 SHEET 1 AA2 2 GLU A 429 GLU A 434 0 SHEET 2 AA2 2 VAL A 440 MET A 445 -1 O GLU A 443 N ALA A 431 LINK SG CYS A 528 C3 LMB A1101 1555 1555 1.77 LINK OG1 THR B 24 MG MG B 202 1555 1555 2.05 LINK OG1 THR B 42 MG MG B 202 1555 1555 2.04 LINK O3G GTP B 201 MG MG B 202 1555 1555 2.07 LINK O1B GTP B 201 MG MG B 202 1555 1555 2.02 SITE 1 AC1 21 ASP B 18 GLY B 20 THR B 21 GLY B 22 SITE 2 AC1 21 LYS B 23 THR B 24 THR B 25 GLU B 36 SITE 3 AC1 21 LYS B 37 TYR B 39 ALA B 41 THR B 42 SITE 4 AC1 21 GLY B 68 ASN B 122 LYS B 123 ASP B 125 SITE 5 AC1 21 ILE B 126 SER B 150 ALA B 151 LYS B 152 SITE 6 AC1 21 MG B 202 SITE 1 AC2 3 THR B 24 THR B 42 GTP B 201 SITE 1 AC3 11 LYS A 514 LYS A 522 LEU A 525 CYS A 528 SITE 2 AC3 11 GLU A 529 LYS A 537 ALA A 541 PHE A 561 SITE 3 AC3 11 THR A 564 LYS A 568 PHE A 572 CRYST1 122.290 151.330 234.843 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008177 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004258 0.00000