data_6TVQ # _entry.id 6TVQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6TVQ pdb_00006tvq 10.2210/pdb6tvq/pdb WWPDB D_1292106163 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6TVQ _pdbx_database_status.recvd_initial_deposition_date 2020-01-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huhmann, S.' 1 ? 'Nyakatura, E.K.' 2 ? 'Rohrhofer, A.' 3 ? 'Schmidt, B.' 4 ? 'Eichler, J.' 5 ? 'Moschner, J.' 6 ? 'Roth, C.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chembiochem _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1439-7633 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 22 _citation.language ? _citation.page_first 3443 _citation.page_last 3451 _citation.title 'Systematic Evaluation of Fluorination as Modification for Peptide-Based Fusion Inhibitors against HIV-1 Infection.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/cbic.202100417 _citation.pdbx_database_id_PubMed 34605595 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huhmann, S.' 1 0000-0001-5519-3426 primary 'Nyakatura, E.K.' 2 ? primary 'Rohrhofer, A.' 3 ? primary 'Moschner, J.' 4 ? primary 'Schmidt, B.' 5 0000-0003-0059-0349 primary 'Eichler, J.' 6 0000-0001-6683-9456 primary 'Roth, C.' 7 0000-0001-5806-0987 primary 'Koksch, B.' 8 0000-0002-9747-0740 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6TVQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.875 _cell.length_a_esd ? _cell.length_b 44.875 _cell.length_b_esd ? _cell.length_c 209.645 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Env polyprotein (Fragment)' 4515.291 1 ? ? ? ? 2 polymer syn 'Envelope glycoprotein gp160' 3913.264 1 ? ? ? ? 3 water nat water 18.015 53 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Env polyprotein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(ACE)NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ(NH2)' XNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQX AaA ? 2 'polypeptide(L)' no no EQIWNNMTWMEWDREINNYTSLIHSLIEESQ EQIWNNMTWMEWDREINNYTSLIHSLIEESQ BBB ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 ASN n 1 3 ASN n 1 4 LEU n 1 5 LEU n 1 6 ARG n 1 7 ALA n 1 8 ILE n 1 9 GLU n 1 10 ALA n 1 11 GLN n 1 12 GLN n 1 13 HIS n 1 14 LEU n 1 15 LEU n 1 16 GLN n 1 17 LEU n 1 18 THR n 1 19 VAL n 1 20 TRP n 1 21 GLY n 1 22 ILE n 1 23 LYS n 1 24 GLN n 1 25 LEU n 1 26 GLN n 1 27 ALA n 1 28 ARG n 1 29 ILE n 1 30 LEU n 1 31 ALA n 1 32 VAL n 1 33 GLU n 1 34 ARG n 1 35 TYR n 1 36 LEU n 1 37 LYS n 1 38 ASP n 1 39 GLN n 1 40 NH2 n 2 1 GLU n 2 2 GLN n 2 3 ILE n 2 4 TRP n 2 5 ASN n 2 6 ASN n 2 7 MET n 2 8 THR n 2 9 TRP n 2 10 MET n 2 11 GLU n 2 12 TRP n 2 13 ASP n 2 14 ARG n 2 15 GLU n 2 16 ILE n 2 17 ASN n 2 18 ASN n 2 19 TYR n 2 20 THR n 2 21 SER n 2 22 LEU n 2 23 ILE n 2 24 HIS n 2 25 SER n 2 26 LEU n 2 27 ILE n 2 28 GLU n 2 29 GLU n 2 30 SER n 2 31 GLN n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 40 'Human immunodeficiency virus 1' ? 11676 ? 2 1 sample 1 31 'Human immunodeficiency virus 1' ? 11676 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP C7F3P9_9HIV1 C7F3P9 ? 1 NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ 9 2 UNP Q6TAQ1_9HIV1 Q6TAQ1 ? 2 EQIWNNMTWMEWDREINNYTSLIHSLIEESQ 616 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6TVQ AaA 2 ? 39 ? C7F3P9 9 ? 46 ? 602 639 2 2 6TVQ BBB 1 ? 31 ? Q6TAQ1 616 ? 646 ? 620 650 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6TVQ ACE AaA 1 ? UNP C7F3P9 ? ? acetylation 601 1 1 6TVQ NH2 AaA 40 ? UNP C7F3P9 ? ? amidation 640 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6TVQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Ammonium sulfate, PEG 3350, Bis-Tris' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-11-06 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.918400 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.918400 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6TVQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 38.241 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14982 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.1 _reflns.pdbx_Rmerge_I_obs 0.152 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.048 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.48 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 742 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.669 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 1.856 _refine.aniso_B[1][2] 0.928 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 1.856 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -6.020 _refine.B_iso_max ? _refine.B_iso_mean 27.725 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6TVQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.450 _refine.ls_d_res_low 38.24 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14980 _refine.ls_number_reflns_R_free 710 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.953 _refine.ls_percent_reflns_R_free 4.740 _refine.ls_R_factor_all 0.190 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2426 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1879 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.073 _refine.pdbx_overall_ESU_R_Free 0.074 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.661 _refine.overall_SU_ML 0.073 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 535 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 592 _refine_hist.d_res_high 1.450 _refine_hist.d_res_low 38.24 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 0.013 563 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.017 521 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.710 1.633 765 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.585 1.571 1206 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.355 5.000 65 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 26.128 21.481 27 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.986 15.000 93 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 15.095 15.000 4 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.086 0.200 74 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 628 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 117 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.218 0.200 134 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.174 0.200 421 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.174 0.200 272 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.086 0.200 246 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.311 0.200 25 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.253 0.200 15 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.183 0.200 59 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.133 0.200 5 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 4.138 2.610 260 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 4.132 2.619 261 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 5.023 3.920 325 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 5.016 3.931 326 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 5.329 3.167 303 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 5.303 3.154 302 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 6.362 4.579 440 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 6.355 4.590 441 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.616 32.464 667 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 5.247 32.222 657 ? r_lrange_other ? ? 'X-RAY DIFFRACTION' ? 4.109 3.000 1082 ? r_rigid_bond_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.450 1.488 . . 46 1042 100.0000 . . . 0.413 . 0.365 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.488 1.529 . . 65 990 100.0000 . . . 0.333 . 0.309 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.529 1.573 . . 51 963 99.9015 . . . 0.312 . 0.267 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.573 1.621 . . 54 963 100.0000 . . . 0.316 . 0.256 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.621 1.674 . . 47 920 100.0000 . . . 0.295 . 0.227 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.674 1.733 . . 46 902 100.0000 . . . 0.238 . 0.194 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.733 1.798 . . 38 869 100.0000 . . . 0.234 . 0.175 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.798 1.872 . . 37 844 100.0000 . . . 0.204 . 0.140 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.872 1.955 . . 46 805 100.0000 . . . 0.263 . 0.165 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.955 2.050 . . 31 774 99.8759 . . . 0.204 . 0.164 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.050 2.161 . . 26 743 100.0000 . . . 0.194 . 0.135 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.161 2.292 . . 25 705 99.8632 . . . 0.200 . 0.133 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.292 2.450 . . 28 659 100.0000 . . . 0.205 . 0.149 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.450 2.646 . . 37 623 100.0000 . . . 0.213 . 0.153 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.646 2.898 . . 35 558 100.0000 . . . 0.207 . 0.171 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.898 3.240 . . 24 532 100.0000 . . . 0.302 . 0.224 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.240 3.740 . . 30 456 100.0000 . . . 0.274 . 0.190 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.740 4.577 . . 18 400 99.7613 . . . 0.203 . 0.152 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.577 6.459 . . 15 323 100.0000 . . . 0.178 . 0.191 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.459 10 . . 11 199 100.0000 . . . 0.266 . 0.247 . . . . . . . . . . . # _struct.entry_id 6TVQ _struct.title 'Structure of native gp41 derived peptide fusion inhibitor' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6TVQ _struct_keywords.text 'Inhibitor, helix bundle, HIV, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 2 ? GLN A 39 ? ASN AaA 602 GLN AaA 639 1 ? 38 HELX_P HELX_P2 AA2 THR B 8 ? GLU B 29 ? THR BBB 627 GLU BBB 648 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A ASN 2 N ? ? AaA ACE 601 AaA ASN 602 1_555 ? ? ? ? ? ? ? 1.370 ? ? covale2 covale both ? A GLN 39 C ? ? ? 1_555 A NH2 40 N ? ? AaA GLN 639 AaA NH2 640 1_555 ? ? ? ? ? ? ? 1.388 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6TVQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022284 _atom_sites.fract_transf_matrix[1][2] 0.012866 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025731 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004770 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 1.032 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 601 552 ACE ACT AaA . n A 1 2 ASN 2 602 553 ASN ASN AaA . n A 1 3 ASN 3 603 554 ASN ASN AaA . n A 1 4 LEU 4 604 555 LEU LEU AaA . n A 1 5 LEU 5 605 556 LEU LEU AaA . n A 1 6 ARG 6 606 557 ARG ARG AaA . n A 1 7 ALA 7 607 558 ALA ALA AaA . n A 1 8 ILE 8 608 559 ILE ILE AaA . n A 1 9 GLU 9 609 560 GLU GLU AaA . n A 1 10 ALA 10 610 561 ALA ALA AaA . n A 1 11 GLN 11 611 562 GLN GLN AaA . n A 1 12 GLN 12 612 563 GLN GLN AaA . n A 1 13 HIS 13 613 564 HIS HIS AaA . n A 1 14 LEU 14 614 565 LEU LEU AaA . n A 1 15 LEU 15 615 566 LEU LEU AaA . n A 1 16 GLN 16 616 567 GLN GLN AaA . n A 1 17 LEU 17 617 568 LEU LEU AaA . n A 1 18 THR 18 618 569 THR THR AaA . n A 1 19 VAL 19 619 570 VAL VAL AaA . n A 1 20 TRP 20 620 571 TRP TRP AaA . n A 1 21 GLY 21 621 572 GLY GLY AaA . n A 1 22 ILE 22 622 573 ILE ILE AaA . n A 1 23 LYS 23 623 574 LYS LYS AaA . n A 1 24 GLN 24 624 575 GLN GLN AaA . n A 1 25 LEU 25 625 576 LEU LEU AaA . n A 1 26 GLN 26 626 577 GLN GLN AaA . n A 1 27 ALA 27 627 578 ALA ALA AaA . n A 1 28 ARG 28 628 579 ARG ARG AaA . n A 1 29 ILE 29 629 580 ILE ILE AaA . n A 1 30 LEU 30 630 581 LEU LEU AaA . n A 1 31 ALA 31 631 582 ALA ALA AaA . n A 1 32 VAL 32 632 583 VAL VAL AaA . n A 1 33 GLU 33 633 584 GLU GLU AaA . n A 1 34 ARG 34 634 585 ARG ARG AaA . n A 1 35 TYR 35 635 586 TYR TYR AaA . n A 1 36 LEU 36 636 587 LEU LEU AaA . n A 1 37 LYS 37 637 588 LYS LYS AaA . n A 1 38 ASP 38 638 589 ASP ASP AaA . n A 1 39 GLN 39 639 590 GLN GLN AaA . n A 1 40 NH2 40 640 591 NH2 NH2 AaA . n B 2 1 GLU 1 620 ? ? ? BBB . n B 2 2 GLN 2 621 ? ? ? BBB . n B 2 3 ILE 3 622 ? ? ? BBB . n B 2 4 TRP 4 623 ? ? ? BBB . n B 2 5 ASN 5 624 624 ASN ASN BBB . n B 2 6 ASN 6 625 625 ASN ASN BBB . n B 2 7 MET 7 626 626 MET MET BBB . n B 2 8 THR 8 627 627 THR THR BBB . n B 2 9 TRP 9 628 628 TRP TRP BBB . n B 2 10 MET 10 629 629 MET MET BBB . n B 2 11 GLU 11 630 630 GLU GLU BBB . n B 2 12 TRP 12 631 631 TRP TRP BBB . n B 2 13 ASP 13 632 632 ASP ASP BBB . n B 2 14 ARG 14 633 633 ARG ARG BBB . n B 2 15 GLU 15 634 634 GLU GLU BBB . n B 2 16 ILE 16 635 635 ILE ILE BBB . n B 2 17 ASN 17 636 636 ASN ASN BBB . n B 2 18 ASN 18 637 637 ASN ASN BBB . n B 2 19 TYR 19 638 638 TYR TYR BBB . n B 2 20 THR 20 639 639 THR THR BBB . n B 2 21 SER 21 640 640 SER SER BBB . n B 2 22 LEU 22 641 641 LEU LEU BBB . n B 2 23 ILE 23 642 642 ILE ILE BBB . n B 2 24 HIS 24 643 643 HIS HIS BBB . n B 2 25 SER 25 644 644 SER SER BBB . n B 2 26 LEU 26 645 645 LEU LEU BBB . n B 2 27 ILE 27 646 646 ILE ILE BBB . n B 2 28 GLU 28 647 647 GLU GLU BBB . n B 2 29 GLU 29 648 648 GLU GLU BBB . n B 2 30 SER 30 649 ? ? ? BBB . n B 2 31 GLN 31 650 ? ? ? BBB . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 701 36 HOH HOH AaA . C 3 HOH 2 702 2 HOH HOH AaA . C 3 HOH 3 703 17 HOH HOH AaA . C 3 HOH 4 704 10 HOH HOH AaA . C 3 HOH 5 705 33 HOH HOH AaA . C 3 HOH 6 706 50 HOH HOH AaA . C 3 HOH 7 707 4 HOH HOH AaA . C 3 HOH 8 708 6 HOH HOH AaA . C 3 HOH 9 709 12 HOH HOH AaA . C 3 HOH 10 710 3 HOH HOH AaA . C 3 HOH 11 711 16 HOH HOH AaA . C 3 HOH 12 712 8 HOH HOH AaA . C 3 HOH 13 713 32 HOH HOH AaA . C 3 HOH 14 714 11 HOH HOH AaA . C 3 HOH 15 715 49 HOH HOH AaA . C 3 HOH 16 716 18 HOH HOH AaA . C 3 HOH 17 717 29 HOH HOH AaA . C 3 HOH 18 718 30 HOH HOH AaA . C 3 HOH 19 719 13 HOH HOH AaA . C 3 HOH 20 720 7 HOH HOH AaA . C 3 HOH 21 721 5 HOH HOH AaA . C 3 HOH 22 722 47 HOH HOH AaA . C 3 HOH 23 723 1 HOH HOH AaA . C 3 HOH 24 724 48 HOH HOH AaA . C 3 HOH 25 725 23 HOH HOH AaA . C 3 HOH 26 726 52 HOH HOH AaA . C 3 HOH 27 727 35 HOH HOH AaA . C 3 HOH 28 728 34 HOH HOH AaA . C 3 HOH 29 729 31 HOH HOH AaA . C 3 HOH 30 730 42 HOH HOH AaA . C 3 HOH 31 731 22 HOH HOH AaA . C 3 HOH 32 732 59 HOH HOH AaA . C 3 HOH 33 733 20 HOH HOH AaA . C 3 HOH 34 734 56 HOH HOH AaA . C 3 HOH 35 735 43 HOH HOH AaA . C 3 HOH 36 736 27 HOH HOH AaA . C 3 HOH 37 737 19 HOH HOH AaA . C 3 HOH 38 738 39 HOH HOH AaA . C 3 HOH 39 739 25 HOH HOH AaA . C 3 HOH 40 740 58 HOH HOH AaA . C 3 HOH 41 741 44 HOH HOH AaA . C 3 HOH 42 742 9 HOH HOH AaA . C 3 HOH 43 743 15 HOH HOH AaA . C 3 HOH 44 744 40 HOH HOH AaA . C 3 HOH 45 745 41 HOH HOH AaA . D 3 HOH 1 701 28 HOH HOH BBB . D 3 HOH 2 702 51 HOH HOH BBB . D 3 HOH 3 703 55 HOH HOH BBB . D 3 HOH 4 704 38 HOH HOH BBB . D 3 HOH 5 705 21 HOH HOH BBB . D 3 HOH 6 706 60 HOH HOH BBB . D 3 HOH 7 707 57 HOH HOH BBB . D 3 HOH 8 708 53 HOH HOH BBB . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10620 ? 1 MORE -85 ? 1 'SSA (A^2)' 10540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 -44.8750000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5000000000 0.8660254038 0.0000000000 -22.4375000000 -0.8660254038 -0.5000000000 0.0000000000 -38.8628899948 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 AaA HOH 705 ? C HOH . 2 1 AaA HOH 716 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-01-27 2 'Structure model' 1 1 2022-02-16 3 'Structure model' 2 0 2023-07-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Non-polymer description' 7 3 'Structure model' 'Polymer sequence' 8 3 'Structure model' 'Source and taxonomy' 9 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 3 'Structure model' atom_site 5 3 'Structure model' atom_site_anisotrop 6 3 'Structure model' atom_type 7 3 'Structure model' chem_comp 8 3 'Structure model' entity 9 3 'Structure model' entity_poly 10 3 'Structure model' entity_poly_seq 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_entity_src_syn 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' pdbx_poly_seq_scheme 15 3 'Structure model' pdbx_struct_assembly_gen 16 3 'Structure model' pdbx_struct_special_symmetry 17 3 'Structure model' struct_asym 18 3 'Structure model' struct_conf 19 3 'Structure model' struct_conn 20 3 'Structure model' struct_ref 21 3 'Structure model' struct_ref_seq 22 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_database_2.pdbx_DOI' 13 2 'Structure model' '_database_2.pdbx_database_accession' 14 3 'Structure model' '_atom_site.B_iso_or_equiv' 15 3 'Structure model' '_atom_site.Cartn_x' 16 3 'Structure model' '_atom_site.Cartn_y' 17 3 'Structure model' '_atom_site.Cartn_z' 18 3 'Structure model' '_atom_site.auth_asym_id' 19 3 'Structure model' '_atom_site.auth_atom_id' 20 3 'Structure model' '_atom_site.auth_comp_id' 21 3 'Structure model' '_atom_site.auth_seq_id' 22 3 'Structure model' '_atom_site.group_PDB' 23 3 'Structure model' '_atom_site.label_alt_id' 24 3 'Structure model' '_atom_site.label_asym_id' 25 3 'Structure model' '_atom_site.label_atom_id' 26 3 'Structure model' '_atom_site.label_comp_id' 27 3 'Structure model' '_atom_site.label_entity_id' 28 3 'Structure model' '_atom_site.label_seq_id' 29 3 'Structure model' '_atom_site.occupancy' 30 3 'Structure model' '_atom_site.type_symbol' 31 3 'Structure model' '_atom_site_anisotrop.U[1][1]' 32 3 'Structure model' '_atom_site_anisotrop.U[1][2]' 33 3 'Structure model' '_atom_site_anisotrop.U[1][3]' 34 3 'Structure model' '_atom_site_anisotrop.U[2][2]' 35 3 'Structure model' '_atom_site_anisotrop.U[2][3]' 36 3 'Structure model' '_atom_site_anisotrop.U[3][3]' 37 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 38 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 39 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 40 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 41 3 'Structure model' '_atom_site_anisotrop.pdbx_label_alt_id' 42 3 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 43 3 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 44 3 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 45 3 'Structure model' '_atom_site_anisotrop.pdbx_label_seq_id' 46 3 'Structure model' '_atom_site_anisotrop.type_symbol' 47 3 'Structure model' '_atom_type.pdbx_N_electrons' 48 3 'Structure model' '_atom_type.pdbx_scat_Z' 49 3 'Structure model' '_chem_comp.formula' 50 3 'Structure model' '_chem_comp.formula_weight' 51 3 'Structure model' '_chem_comp.id' 52 3 'Structure model' '_chem_comp.name' 53 3 'Structure model' '_entity_poly.nstd_monomer' 54 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 55 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 56 3 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 57 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 58 3 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 59 3 'Structure model' '_struct_conf.beg_auth_seq_id' 60 3 'Structure model' '_struct_conf.beg_label_seq_id' 61 3 'Structure model' '_struct_conf.end_auth_seq_id' 62 3 'Structure model' '_struct_conf.end_label_seq_id' 63 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 64 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 65 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 66 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 67 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 68 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 69 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 70 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 71 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 72 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 73 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 74 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 75 3 'Structure model' '_struct_ref.db_code' 76 3 'Structure model' '_struct_ref.pdbx_align_begin' 77 3 'Structure model' '_struct_ref.pdbx_db_accession' 78 3 'Structure model' '_struct_ref_seq.db_align_beg' 79 3 'Structure model' '_struct_ref_seq.db_align_end' 80 3 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 81 3 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 82 3 'Structure model' '_struct_ref_seq.pdbx_db_accession' 83 3 'Structure model' '_struct_ref_seq.seq_align_beg' 84 3 'Structure model' '_struct_ref_seq.seq_align_end' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0258 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? ACORN ? ? ? . 4 # _pdbx_entry_details.entry_id 6TVQ _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O AaA HOH 729 ? ? O AaA HOH 731 ? ? 1.70 2 1 O AaA HOH 739 ? ? O AaA HOH 740 ? ? 1.98 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 AaA _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 731 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 AaA _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 731 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 18_444 _pdbx_validate_symm_contact.dist 1.40 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASN _pdbx_validate_peptide_omega.auth_asym_id_1 BBB _pdbx_validate_peptide_omega.auth_seq_id_1 624 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 BBB _pdbx_validate_peptide_omega.auth_seq_id_2 625 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 149.25 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id AaA _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 745 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.94 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 BBB GLU 620 ? B GLU 1 2 1 Y 1 BBB GLN 621 ? B GLN 2 3 1 Y 1 BBB ILE 622 ? B ILE 3 4 1 Y 1 BBB TRP 623 ? B TRP 4 5 1 Y 1 BBB SER 649 ? B SER 30 6 1 Y 1 BBB GLN 650 ? B GLN 31 # _pdbx_audit_support.funding_organization 'German Research Foundation (DFG)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ? #