HEADER BLOOD CLOTTING 13-JAN-20 6TWB TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF COAGULATION FACTOR XIA IN TITLE 2 COMPLEX WITH DOUBLE BRIDGED PEPTIDE F19 CAVEAT 6TWB PRO B 10 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XI; COMPND 3 CHAIN: A, H; COMPND 4 SYNONYM: FXI,PLASMA THROMBOPLASTIN ANTECEDENT,PTA; COMPND 5 EC: 3.4.21.27; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DOUBLE BRIDGED PEPTIDE F19; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PROTEASE, COAGULATION FACTORS, INHIBITOR, DOUBLE BRIDGED PEPTIDE, KEYWDS 2 PHAGE DISPLAY, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR X.D.KONG,F.POJER,C.HEINIS REVDAT 4 24-JAN-24 6TWB 1 JRNL REVDAT 3 27-MAY-20 6TWB 1 JRNL REVDAT 2 20-MAY-20 6TWB 1 CAVEAT COMPND SOURCE JRNL REVDAT 2 2 1 REMARK DBREF SEQRES HET REVDAT 2 3 1 HETNAM FORMUL HELIX LINK REVDAT 2 4 1 SITE ATOM REVDAT 1 13-MAY-20 6TWB 0 JRNL AUTH X.D.KONG,J.MORIYA,V.CARLE,F.POJER,L.A.ABRIATA,K.DEYLE, JRNL AUTH 2 C.HEINIS JRNL TITL DE NOVO DEVELOPMENT OF PROTEOLYTICALLY RESISTANT THERAPEUTIC JRNL TITL 2 PEPTIDES FOR ORAL ADMINISTRATION. JRNL REF NAT BIOMED ENG V. 4 560 2020 JRNL REFN ESSN 2157-846X JRNL PMID 32393891 JRNL DOI 10.1038/S41551-020-0556-3 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV-3374 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.590 REMARK 3 FREE R VALUE TEST SET COUNT : 428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9000 - 4.1909 1.00 3085 133 0.1580 0.1938 REMARK 3 2 4.1909 - 3.3268 1.00 2924 138 0.1726 0.2598 REMARK 3 3 3.3268 - 2.9063 0.99 2881 157 0.2491 0.3117 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 33.4095 -20.5821 -13.6334 REMARK 3 T TENSOR REMARK 3 T11: 0.3648 T22: 0.3195 REMARK 3 T33: 0.2109 T12: 0.0439 REMARK 3 T13: 0.0329 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 3.2492 L22: 3.4247 REMARK 3 L33: 5.2032 L12: 1.1450 REMARK 3 L13: 1.3380 L23: -0.4671 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 0.0255 S13: 0.0566 REMARK 3 S21: 0.0052 S22: 0.0084 S23: -0.0235 REMARK 3 S31: -0.1910 S32: 0.1864 S33: -0.0084 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9337 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.65 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.35 REMARK 200 R MERGE FOR SHELL (I) : 0.77300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TY6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM (NH4)2SO4, 25% PEG4000, AND 100 REMARK 280 MM NAOAC, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.67067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.83533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.83533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.67067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 ASP A -1 REMARK 465 ASP A 0 REMARK 465 ASP A 1 REMARK 465 ASP A 2 REMARK 465 LYS A 3 REMARK 465 MET A 4 REMARK 465 ASP A 5 REMARK 465 ASN A 6 REMARK 465 GLU A 7 REMARK 465 CYS A 8 REMARK 465 THR A 9 REMARK 465 THR A 10 REMARK 465 LYS A 11 REMARK 465 ILE A 12 REMARK 465 LYS A 13 REMARK 465 PRO A 14 REMARK 465 ARG A 15 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 MET H 352 REMARK 465 ASP H 353 REMARK 465 ASP H 354 REMARK 465 ASP H 355 REMARK 465 ASP H 356 REMARK 465 LYS H 357 REMARK 465 MET H 358 REMARK 465 ASP H 359 REMARK 465 ASN H 360 REMARK 465 ARG H 369 REMARK 465 ILE H 370 REMARK 465 VAL H 371 REMARK 465 GLY H 372 REMARK 465 GLY H 373 REMARK 465 THR H 374 REMARK 465 ALA H 375 REMARK 465 SER H 376 REMARK 465 VAL H 377 REMARK 465 ARG H 378 REMARK 465 GLY H 379 REMARK 465 GLU H 380 REMARK 465 TRP H 381 REMARK 465 PRO H 382 REMARK 465 TRP H 383 REMARK 465 GLN H 384 REMARK 465 VAL H 385 REMARK 465 THR H 386 REMARK 465 LEU H 387 REMARK 465 HIS H 388 REMARK 465 THR H 389 REMARK 465 THR H 390 REMARK 465 SER H 391 REMARK 465 PRO H 392 REMARK 465 THR H 393 REMARK 465 GLN H 394 REMARK 465 ARG H 395 REMARK 465 HIS H 396 REMARK 465 LEU H 397 REMARK 465 CYS H 398 REMARK 465 GLY H 399 REMARK 465 GLY H 400 REMARK 465 SER H 401 REMARK 465 ILE H 402 REMARK 465 ILE H 403 REMARK 465 GLY H 404 REMARK 465 ASN H 405 REMARK 465 GLN H 406 REMARK 465 TRP H 407 REMARK 465 ILE H 408 REMARK 465 LEU H 409 REMARK 465 THR H 410 REMARK 465 ALA H 411 REMARK 465 ALA H 412 REMARK 465 HIS H 413 REMARK 465 CYS H 414 REMARK 465 PHE H 415 REMARK 465 TYR H 416 REMARK 465 GLY H 417 REMARK 465 VAL H 418 REMARK 465 GLU H 419 REMARK 465 SER H 420 REMARK 465 PRO H 421 REMARK 465 LYS H 422 REMARK 465 ILE H 423 REMARK 465 LEU H 424 REMARK 465 ARG H 425 REMARK 465 VAL H 426 REMARK 465 TYR H 427 REMARK 465 SER H 428 REMARK 465 GLY H 429 REMARK 465 ILE H 430 REMARK 465 LEU H 431 REMARK 465 ASN H 432 REMARK 465 GLN H 433 REMARK 465 SER H 434 REMARK 465 GLU H 435 REMARK 465 ILE H 436 REMARK 465 LYS H 437 REMARK 465 GLU H 438 REMARK 465 ASP H 439 REMARK 465 THR H 440 REMARK 465 SER H 441 REMARK 465 PHE H 442 REMARK 465 PHE H 443 REMARK 465 GLY H 444 REMARK 465 VAL H 445 REMARK 465 GLN H 446 REMARK 465 GLU H 447 REMARK 465 ILE H 448 REMARK 465 ILE H 449 REMARK 465 ILE H 450 REMARK 465 HIS H 451 REMARK 465 ASP H 452 REMARK 465 GLN H 453 REMARK 465 TYR H 454 REMARK 465 LYS H 455 REMARK 465 MET H 456 REMARK 465 ALA H 457 REMARK 465 GLU H 458 REMARK 465 SER H 459 REMARK 465 GLY H 460 REMARK 465 TYR H 461 REMARK 465 ASP H 462 REMARK 465 ILE H 463 REMARK 465 ALA H 464 REMARK 465 LEU H 465 REMARK 465 LEU H 466 REMARK 465 LYS H 467 REMARK 465 LEU H 468 REMARK 465 GLU H 469 REMARK 465 THR H 470 REMARK 465 THR H 471 REMARK 465 VAL H 472 REMARK 465 GLY H 473 REMARK 465 TYR H 474 REMARK 465 GLY H 475 REMARK 465 ASP H 476 REMARK 465 SER H 477 REMARK 465 GLN H 478 REMARK 465 ARG H 479 REMARK 465 PRO H 480 REMARK 465 ILE H 481 REMARK 465 CYS H 482 REMARK 465 LEU H 483 REMARK 465 PRO H 484 REMARK 465 SER H 485 REMARK 465 LYS H 486 REMARK 465 GLY H 487 REMARK 465 ASP H 488 REMARK 465 ARG H 489 REMARK 465 ASN H 490 REMARK 465 VAL H 491 REMARK 465 ILE H 492 REMARK 465 TYR H 493 REMARK 465 THR H 494 REMARK 465 ASP H 495 REMARK 465 CYS H 496 REMARK 465 TRP H 497 REMARK 465 VAL H 498 REMARK 465 THR H 499 REMARK 465 GLY H 500 REMARK 465 TRP H 501 REMARK 465 GLY H 502 REMARK 465 TYR H 503 REMARK 465 ARG H 504 REMARK 465 LYS H 505 REMARK 465 LEU H 506 REMARK 465 ARG H 507 REMARK 465 ASP H 508 REMARK 465 LYS H 509 REMARK 465 ILE H 510 REMARK 465 GLN H 511 REMARK 465 ASN H 512 REMARK 465 THR H 513 REMARK 465 LEU H 514 REMARK 465 GLN H 515 REMARK 465 LYS H 516 REMARK 465 ALA H 517 REMARK 465 LYS H 518 REMARK 465 ILE H 519 REMARK 465 PRO H 520 REMARK 465 LEU H 521 REMARK 465 VAL H 522 REMARK 465 THR H 523 REMARK 465 ASN H 524 REMARK 465 GLU H 525 REMARK 465 GLU H 526 REMARK 465 CYS H 527 REMARK 465 GLN H 528 REMARK 465 LYS H 529 REMARK 465 ARG H 530 REMARK 465 TYR H 531 REMARK 465 ARG H 532 REMARK 465 GLY H 533 REMARK 465 HIS H 534 REMARK 465 LYS H 535 REMARK 465 ILE H 536 REMARK 465 THR H 537 REMARK 465 HIS H 538 REMARK 465 LYS H 539 REMARK 465 MET H 540 REMARK 465 ILE H 541 REMARK 465 CYS H 542 REMARK 465 ALA H 543 REMARK 465 GLY H 544 REMARK 465 TYR H 545 REMARK 465 ARG H 546 REMARK 465 GLU H 547 REMARK 465 GLY H 548 REMARK 465 GLY H 549 REMARK 465 LYS H 550 REMARK 465 ASP H 551 REMARK 465 ALA H 552 REMARK 465 CYS H 553 REMARK 465 LYS H 554 REMARK 465 GLY H 555 REMARK 465 ASP H 556 REMARK 465 SER H 557 REMARK 465 GLY H 558 REMARK 465 GLY H 559 REMARK 465 PRO H 560 REMARK 465 LEU H 561 REMARK 465 SER H 562 REMARK 465 CYS H 563 REMARK 465 LYS H 564 REMARK 465 HIS H 565 REMARK 465 ASN H 566 REMARK 465 GLU H 567 REMARK 465 VAL H 568 REMARK 465 TRP H 569 REMARK 465 HIS H 570 REMARK 465 LEU H 571 REMARK 465 VAL H 572 REMARK 465 GLY H 573 REMARK 465 ILE H 574 REMARK 465 THR H 575 REMARK 465 SER H 576 REMARK 465 TRP H 577 REMARK 465 GLY H 578 REMARK 465 GLU H 579 REMARK 465 GLY H 580 REMARK 465 CYS H 581 REMARK 465 ALA H 582 REMARK 465 GLN H 583 REMARK 465 ARG H 584 REMARK 465 GLU H 585 REMARK 465 ARG H 586 REMARK 465 PRO H 587 REMARK 465 GLY H 588 REMARK 465 VAL H 589 REMARK 465 TYR H 590 REMARK 465 THR H 591 REMARK 465 ASN H 592 REMARK 465 VAL H 593 REMARK 465 VAL H 594 REMARK 465 GLU H 595 REMARK 465 TYR H 596 REMARK 465 VAL H 597 REMARK 465 ASP H 598 REMARK 465 TRP H 599 REMARK 465 ILE H 600 REMARK 465 LEU H 601 REMARK 465 GLU H 602 REMARK 465 LYS H 603 REMARK 465 THR H 604 REMARK 465 GLN H 605 REMARK 465 ALA H 606 REMARK 465 VAL H 607 REMARK 465 HIS H 608 REMARK 465 HIS H 609 REMARK 465 HIS H 610 REMARK 465 HIS H 611 REMARK 465 HIS H 612 REMARK 465 HIS H 613 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CSA B 1 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN B 3 C ILE B 4 N 0.155 REMARK 500 ILE B 4 C MET B 5 N 0.163 REMARK 500 MET B 5 C CSA B 6 N 0.177 REMARK 500 ARG B 8 NE ARG B 8 CZ 0.145 REMARK 500 ARG B 8 CZ ARG B 8 NH1 0.165 REMARK 500 ARG B 8 CZ ARG B 8 NH2 -0.097 REMARK 500 ARG B 8 C CYS B 9 N 0.147 REMARK 500 CYS B 9 C PRO B 10 N 0.166 REMARK 500 PRO B 10 N PRO B 10 CA -0.125 REMARK 500 PRO B 10 CD PRO B 10 N 0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 368 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG B 8 CD - NE - CZ ANGL. DEV. = -9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 50 19.73 -141.98 REMARK 500 LYS A 95 -47.19 -133.68 REMARK 500 ASN A 130 -5.38 -56.16 REMARK 500 LYS A 146 137.20 -178.06 REMARK 500 ARG A 148 76.70 54.86 REMARK 500 ASP A 149 -151.47 -129.84 REMARK 500 SER A 214 -39.51 -139.51 REMARK 500 ALA A 220 17.12 55.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CSA B 1 and VAL B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CSA B 1 and CYS B 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MET B 5 and CSA B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CSA B 6 and CYS B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CSA B 6 and CYS B 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 10 and NH2 B REMARK 800 11 DBREF 6TWB A 3 245 UNP P03951 FA11_HUMAN 321 571 DBREF 6TWB H 357 607 UNP P03951 FA11_HUMAN 321 571 DBREF 6TWB B 1 11 PDB 6TWB 6TWB 1 11 SEQADV 6TWB MET A -2 UNP P03951 INITIATING METHIONINE SEQADV 6TWB ASP A -1 UNP P03951 EXPRESSION TAG SEQADV 6TWB ASP A 0 UNP P03951 EXPRESSION TAG SEQADV 6TWB ASP A 1 UNP P03951 EXPRESSION TAG SEQADV 6TWB ASP A 2 UNP P03951 EXPRESSION TAG SEQADV 6TWB GLY A 113 UNP P03951 ASN 437 CONFLICT SEQADV 6TWB GLY A 115 UNP P03951 THR 439 CONFLICT SEQADV 6TWB HIS A 246 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS A 247 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS A 248 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS A 249 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS A 250 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS A 251 UNP P03951 EXPRESSION TAG SEQADV 6TWB MET H 352 UNP P03951 INITIATING METHIONINE SEQADV 6TWB ASP H 353 UNP P03951 EXPRESSION TAG SEQADV 6TWB ASP H 354 UNP P03951 EXPRESSION TAG SEQADV 6TWB ASP H 355 UNP P03951 EXPRESSION TAG SEQADV 6TWB ASP H 356 UNP P03951 EXPRESSION TAG SEQADV 6TWB GLY H 473 UNP P03951 ASN 437 CONFLICT SEQADV 6TWB GLY H 475 UNP P03951 THR 439 CONFLICT SEQADV 6TWB HIS H 608 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS H 609 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS H 610 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS H 611 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS H 612 UNP P03951 EXPRESSION TAG SEQADV 6TWB HIS H 613 UNP P03951 EXPRESSION TAG SEQRES 1 A 262 MET ASP ASP ASP ASP LYS MET ASP ASN GLU CYS THR THR SEQRES 2 A 262 LYS ILE LYS PRO ARG ILE VAL GLY GLY THR ALA SER VAL SEQRES 3 A 262 ARG GLY GLU TRP PRO TRP GLN VAL THR LEU HIS THR THR SEQRES 4 A 262 SER PRO THR GLN ARG HIS LEU CYS GLY GLY SER ILE ILE SEQRES 5 A 262 GLY ASN GLN TRP ILE LEU THR ALA ALA HIS CYS PHE TYR SEQRES 6 A 262 GLY VAL GLU SER PRO LYS ILE LEU ARG VAL TYR SER GLY SEQRES 7 A 262 ILE LEU ASN GLN SER GLU ILE LYS GLU ASP THR SER PHE SEQRES 8 A 262 PHE GLY VAL GLN GLU ILE ILE ILE HIS ASP GLN TYR LYS SEQRES 9 A 262 MET ALA GLU SER GLY TYR ASP ILE ALA LEU LEU LYS LEU SEQRES 10 A 262 GLU THR THR VAL GLY TYR GLY ASP SER GLN ARG PRO ILE SEQRES 11 A 262 CYS LEU PRO SER LYS GLY ASP ARG ASN VAL ILE TYR THR SEQRES 12 A 262 ASP CYS TRP VAL THR GLY TRP GLY TYR ARG LYS LEU ARG SEQRES 13 A 262 ASP LYS ILE GLN ASN THR LEU GLN LYS ALA LYS ILE PRO SEQRES 14 A 262 LEU VAL THR ASN GLU GLU CYS GLN LYS ARG TYR ARG GLY SEQRES 15 A 262 HIS LYS ILE THR HIS LYS MET ILE CYS ALA GLY TYR ARG SEQRES 16 A 262 GLU GLY GLY LYS ASP ALA CYS LYS GLY ASP SER GLY GLY SEQRES 17 A 262 PRO LEU SER CYS LYS HIS ASN GLU VAL TRP HIS LEU VAL SEQRES 18 A 262 GLY ILE THR SER TRP GLY GLU GLY CYS ALA GLN ARG GLU SEQRES 19 A 262 ARG PRO GLY VAL TYR THR ASN VAL VAL GLU TYR VAL ASP SEQRES 20 A 262 TRP ILE LEU GLU LYS THR GLN ALA VAL HIS HIS HIS HIS SEQRES 21 A 262 HIS HIS SEQRES 1 H 262 MET ASP ASP ASP ASP LYS MET ASP ASN GLU CYS THR THR SEQRES 2 H 262 LYS ILE LYS PRO ARG ILE VAL GLY GLY THR ALA SER VAL SEQRES 3 H 262 ARG GLY GLU TRP PRO TRP GLN VAL THR LEU HIS THR THR SEQRES 4 H 262 SER PRO THR GLN ARG HIS LEU CYS GLY GLY SER ILE ILE SEQRES 5 H 262 GLY ASN GLN TRP ILE LEU THR ALA ALA HIS CYS PHE TYR SEQRES 6 H 262 GLY VAL GLU SER PRO LYS ILE LEU ARG VAL TYR SER GLY SEQRES 7 H 262 ILE LEU ASN GLN SER GLU ILE LYS GLU ASP THR SER PHE SEQRES 8 H 262 PHE GLY VAL GLN GLU ILE ILE ILE HIS ASP GLN TYR LYS SEQRES 9 H 262 MET ALA GLU SER GLY TYR ASP ILE ALA LEU LEU LYS LEU SEQRES 10 H 262 GLU THR THR VAL GLY TYR GLY ASP SER GLN ARG PRO ILE SEQRES 11 H 262 CYS LEU PRO SER LYS GLY ASP ARG ASN VAL ILE TYR THR SEQRES 12 H 262 ASP CYS TRP VAL THR GLY TRP GLY TYR ARG LYS LEU ARG SEQRES 13 H 262 ASP LYS ILE GLN ASN THR LEU GLN LYS ALA LYS ILE PRO SEQRES 14 H 262 LEU VAL THR ASN GLU GLU CYS GLN LYS ARG TYR ARG GLY SEQRES 15 H 262 HIS LYS ILE THR HIS LYS MET ILE CYS ALA GLY TYR ARG SEQRES 16 H 262 GLU GLY GLY LYS ASP ALA CYS LYS GLY ASP SER GLY GLY SEQRES 17 H 262 PRO LEU SER CYS LYS HIS ASN GLU VAL TRP HIS LEU VAL SEQRES 18 H 262 GLY ILE THR SER TRP GLY GLU GLY CYS ALA GLN ARG GLU SEQRES 19 H 262 ARG PRO GLY VAL TYR THR ASN VAL VAL GLU TYR VAL ASP SEQRES 20 H 262 TRP ILE LEU GLU LYS THR GLN ALA VAL HIS HIS HIS HIS SEQRES 21 H 262 HIS HIS SEQRES 1 B 11 CSA VAL ASN ILE MET CSA CYS ARG CYS PRO NH2 HET CSA B 1 9 HET CSA B 6 10 HET NH2 B 11 1 HET NH4 A 301 5 HET NH4 A 302 5 HET NH4 B 101 5 HETNAM CSA S-ACETONYLCYSTEINE HETNAM NH2 AMINO GROUP HETNAM NH4 AMMONIUM ION FORMUL 3 CSA 2(C6 H11 N O3 S) FORMUL 3 NH2 H2 N FORMUL 4 NH4 3(H4 N 1+) FORMUL 7 HOH *10(H2 O) HELIX 1 AA1 ALA A 55 TYR A 58B 5 6 HELIX 2 AA2 SER A 62 LYS A 64 5 3 HELIX 3 AA3 ASN A 72 ILE A 76 5 5 HELIX 4 AA4 MET A 96 GLY A 100 5 5 HELIX 5 AA5 THR A 164 TYR A 171 1 9 HELIX 6 AA6 TYR A 234 GLN A 243 1 10 HELIX 7 AA7 ASN B 3 CYS B 7 5 5 SHEET 1 AA1 8 THR A 20 ALA A 21 0 SHEET 2 AA1 8 GLN A 156 LYS A 159 -1 O LYS A 157 N THR A 20 SHEET 3 AA1 8 CYS A 136 GLY A 140 -1 N GLY A 140 O GLN A 156 SHEET 4 AA1 8 PRO A 198 HIS A 203 -1 O SER A 200 N TRP A 137 SHEET 5 AA1 8 VAL A 206 TRP A 215 -1 O VAL A 206 N HIS A 203 SHEET 6 AA1 8 GLY A 226 ASN A 230 -1 O VAL A 227 N TRP A 215 SHEET 7 AA1 8 MET A 180 ALA A 183 -1 N ILE A 181 O TYR A 228 SHEET 8 AA1 8 LEU A 162 VAL A 163 -1 N VAL A 163 O CYS A 182 SHEET 1 AA2 7 GLN A 30 THR A 35 0 SHEET 2 AA2 7 ARG A 39 GLY A 48 -1 O LEU A 41 N LEU A 33 SHEET 3 AA2 7 TRP A 51 THR A 54 -1 O LEU A 53 N SER A 45 SHEET 4 AA2 7 ALA A 104 LEU A 108 -1 O ALA A 104 N THR A 54 SHEET 5 AA2 7 PHE A 83 ILE A 90 -1 N ILE A 89 O LEU A 105 SHEET 6 AA2 7 LEU A 65A SER A 68 -1 N VAL A 66 O PHE A 83 SHEET 7 AA2 7 GLN A 30 THR A 35 -1 N HIS A 34 O ARG A 65B SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.04 SSBOND 2 CYS A 122 CYS H 362 1555 1555 2.03 SSBOND 3 CYS A 136 CYS A 201 1555 1555 2.07 SSBOND 4 CYS A 168 CYS A 182 1555 1555 2.05 SSBOND 5 CYS A 191 CYS A 219 1555 1555 2.06 LINK C CSA B 1 N VAL B 2 1555 1555 1.47 LINK C1 CSA B 1 SG CYS B 7 1555 1555 1.86 LINK C MET B 5 N CSA B 6 1555 1555 1.51 LINK C CSA B 6 N CYS B 7 1555 1555 1.46 LINK C1 CSA B 6 SG CYS B 9 1555 1555 1.84 LINK C PRO B 10 N NH2 B 11 1555 1555 1.43 CISPEP 1 SER A 36A PRO A 36B 0 2.22 SITE 1 AC1 2 ARG A 24 LYS A 175 SITE 1 AC2 1 HIS A 178 SITE 1 AC3 2 CSA B 1 VAL B 2 SITE 1 AC4 4 GLN A 118 ASN B 3 CYS B 7 NH4 B 101 SITE 1 AC5 10 LYS A 192 GLY A 218 VAL B 2 ASN B 3 SITE 2 AC5 10 ILE B 4 MET B 5 CSA B 6 ARG B 8 SITE 3 AC5 10 CYS B 9 NH4 B 101 SITE 1 AC6 14 HIS A 57 ALA A 97 GLU A 98 TYR A 171 SITE 2 AC6 14 HIS A 174 SER A 214 TRP A 215 GLY A 216 SITE 3 AC6 14 GLU A 217 ASN B 3 ILE B 4 CYS B 7 SITE 4 AC6 14 ARG B 8 CYS B 9 SITE 1 AC7 12 HIS A 57 ALA A 97 LYS A 192 SER A 195 SITE 2 AC7 12 SER A 214 ASN B 3 ILE B 4 MET B 5 SITE 3 AC7 12 CYS B 7 ARG B 8 PRO B 10 NH2 B 11 SITE 1 AC8 11 HIS A 57 ALA A 97 LYS A 192 SER A 214 SITE 2 AC8 11 GLY A 218 CSA B 1 ASN B 3 ILE B 4 SITE 3 AC8 11 MET B 5 ARG B 8 CYS B 9 SITE 1 AC9 6 ARG A 39 LEU A 41 LYS A 192 SER A 195 SITE 2 AC9 6 HOH A 401 CYS B 9 CRYST1 77.524 77.524 116.506 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012899 0.007447 0.000000 0.00000 SCALE2 0.000000 0.014895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008583 0.00000