HEADER HYDROLASE 14-JAN-20 6TXG TITLE PROTEINASE K IN COMPLEX WITH A "HALF SANDWICH"-TYPE RU(II) TITLE 2 COORDINATION COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE K; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOPEPTIDASE K,TRITIRACHIUM ALKALINE PROTEINASE; COMPND 5 EC: 3.4.21.64 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARENGYODONTIUM ALBUM; SOURCE 3 ORGANISM_COMMON: TRITIRACHIUM ALBUM; SOURCE 4 ORGANISM_TAXID: 37998 KEYWDS ENZYME, COMPLEX, ANTICANCER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CHINIADIS,P.GIASTAS,I.BRATSOS,A.PAPAKYRIAKOU REVDAT 3 24-JAN-24 6TXG 1 LINK REVDAT 2 03-JUN-20 6TXG 1 JRNL REVDAT 1 29-APR-20 6TXG 0 JRNL AUTH L.CHINIADIS,I.BRATSOS,K.BETHANIS,M.KARPUSAS,P.GIASTAS, JRNL AUTH 2 A.PAPAKYRIAKOU JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURES OF A "HALF SANDWICH"-TYPE JRNL TITL 2 RU(II) COORDINATION COMPOUND BOUND TO HEN EGG-WHITE LYSOZYME JRNL TITL 3 AND PROTEINASE K. JRNL REF J.BIOL.INORG.CHEM. V. 25 635 2020 JRNL REFN ESSN 1432-1327 JRNL PMID 32266561 JRNL DOI 10.1007/S00775-020-01786-Z REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 99661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 4811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.2630 - 4.2626 0.99 3160 161 0.1556 0.1632 REMARK 3 2 4.2626 - 3.3835 1.00 3144 163 0.1341 0.1343 REMARK 3 3 3.3835 - 2.9558 1.00 3142 175 0.1545 0.1743 REMARK 3 4 2.9558 - 2.6855 1.00 3218 124 0.1647 0.1737 REMARK 3 5 2.6855 - 2.4931 1.00 3144 159 0.1557 0.1604 REMARK 3 6 2.4931 - 2.3461 1.00 3157 160 0.1532 0.1924 REMARK 3 7 2.3461 - 2.2286 1.00 3157 169 0.1537 0.1855 REMARK 3 8 2.2286 - 2.1315 1.00 3135 174 0.1409 0.1532 REMARK 3 9 2.1315 - 2.0495 1.00 3153 154 0.1479 0.1543 REMARK 3 10 2.0495 - 1.9788 1.00 3181 166 0.1478 0.1591 REMARK 3 11 1.9788 - 1.9169 1.00 3124 174 0.1494 0.1932 REMARK 3 12 1.9169 - 1.8621 1.00 3201 156 0.1508 0.1504 REMARK 3 13 1.8621 - 1.8131 1.00 3143 161 0.1469 0.1291 REMARK 3 14 1.8131 - 1.7688 1.00 3134 188 0.1518 0.1710 REMARK 3 15 1.7688 - 1.7286 1.00 3143 168 0.1478 0.1725 REMARK 3 16 1.7286 - 1.6918 1.00 3132 162 0.1457 0.1789 REMARK 3 17 1.6918 - 1.6580 1.00 3223 149 0.1460 0.1683 REMARK 3 18 1.6580 - 1.6267 1.00 3160 153 0.1513 0.1573 REMARK 3 19 1.6267 - 1.5976 1.00 3122 203 0.1465 0.1655 REMARK 3 20 1.5976 - 1.5706 1.00 3161 163 0.1420 0.1617 REMARK 3 21 1.5706 - 1.5452 1.00 3124 163 0.1493 0.1928 REMARK 3 22 1.5452 - 1.5214 1.00 3240 151 0.1567 0.1691 REMARK 3 23 1.5214 - 1.4991 1.00 3115 148 0.1525 0.2021 REMARK 3 24 1.4991 - 1.4780 1.00 3169 170 0.1529 0.1684 REMARK 3 25 1.4780 - 1.4580 1.00 3169 156 0.1546 0.1825 REMARK 3 26 1.4580 - 1.4390 1.00 3158 146 0.1594 0.1957 REMARK 3 27 1.4390 - 1.4211 1.00 3223 155 0.1645 0.1864 REMARK 3 28 1.4211 - 1.4039 1.00 3151 140 0.1624 0.1703 REMARK 3 29 1.4039 - 1.3876 1.00 3193 133 0.1733 0.2198 REMARK 3 30 1.3876 - 1.3720 1.00 3174 167 0.1880 0.2304 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7918 15.8718 31.9699 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.1265 REMARK 3 T33: 0.0579 T12: -0.0014 REMARK 3 T13: -0.0085 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.8212 L22: 1.2151 REMARK 3 L33: 0.7404 L12: 0.2099 REMARK 3 L13: -0.0939 L23: 0.1494 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: -0.1870 S13: 0.0182 REMARK 3 S21: 0.0580 S22: -0.0044 S23: -0.0909 REMARK 3 S31: -0.0054 S32: 0.1060 S33: -0.0139 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4510 8.1889 22.2174 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.0696 REMARK 3 T33: 0.0616 T12: 0.0259 REMARK 3 T13: 0.0062 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.5449 L22: 2.7865 REMARK 3 L33: 2.6102 L12: 1.0677 REMARK 3 L13: 0.5725 L23: 1.5601 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: 0.0400 S13: -0.1012 REMARK 3 S21: -0.1248 S22: 0.0318 S23: -0.0925 REMARK 3 S31: 0.0157 S32: 0.0612 S33: -0.0208 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7349 2.0008 24.1145 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0681 REMARK 3 T33: 0.0842 T12: -0.0075 REMARK 3 T13: 0.0041 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.8967 L22: 5.8999 REMARK 3 L33: 3.9695 L12: -0.0005 REMARK 3 L13: 1.8291 L23: -4.2775 REMARK 3 S TENSOR REMARK 3 S11: 0.0900 S12: -0.1715 S13: 0.0253 REMARK 3 S21: 0.0883 S22: -0.0554 S23: 0.0742 REMARK 3 S31: -0.0222 S32: -0.0732 S33: -0.0792 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3630 18.5620 22.5866 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0652 REMARK 3 T33: 0.0585 T12: 0.0075 REMARK 3 T13: -0.0054 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.0823 L22: 1.4577 REMARK 3 L33: 0.8510 L12: 0.6987 REMARK 3 L13: -0.2819 L23: -0.3949 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.0001 S13: 0.1028 REMARK 3 S21: -0.0496 S22: 0.0159 S23: 0.0973 REMARK 3 S31: 0.0134 S32: -0.0259 S33: -0.0148 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0070 18.0376 25.3853 REMARK 3 T TENSOR REMARK 3 T11: 0.0553 T22: 0.0705 REMARK 3 T33: 0.0546 T12: -0.0043 REMARK 3 T13: -0.0086 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.5307 L22: 0.7858 REMARK 3 L33: 1.0705 L12: 0.0000 REMARK 3 L13: -0.6961 L23: -0.2021 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0548 S13: 0.0474 REMARK 3 S21: -0.0149 S22: -0.0224 S23: -0.0189 REMARK 3 S31: 0.0101 S32: 0.0458 S33: 0.0139 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1205 19.9395 38.3000 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.1336 REMARK 3 T33: 0.1021 T12: -0.0049 REMARK 3 T13: 0.0199 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.1594 L22: 8.3748 REMARK 3 L33: 4.5472 L12: -0.1557 REMARK 3 L13: -1.5370 L23: -3.6716 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: -0.2296 S13: 0.1788 REMARK 3 S21: 0.0824 S22: -0.0164 S23: 0.3187 REMARK 3 S31: -0.0430 S32: -0.0867 S33: 0.0424 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0271 31.6357 31.4183 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: 0.0959 REMARK 3 T33: 0.1629 T12: -0.0072 REMARK 3 T13: 0.0216 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 2.6797 L22: 3.5321 REMARK 3 L33: 5.8389 L12: -1.7458 REMARK 3 L13: 1.9243 L23: -3.0754 REMARK 3 S TENSOR REMARK 3 S11: -0.0724 S12: -0.2273 S13: 0.4451 REMARK 3 S21: 0.2323 S22: 0.0393 S23: -0.0874 REMARK 3 S31: -0.3921 S32: -0.0122 S33: 0.1148 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.372 REMARK 200 RESOLUTION RANGE LOW (A) : 57.263 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01091 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.05390 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ID8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM NITRATE, 0.1M CITRATE REMARK 280 BUFFER, PH=6.5, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.65700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.85400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.85400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.48550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.85400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.85400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.82850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.85400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.85400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.48550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.85400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.85400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.82850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.65700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 634 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 410 O HOH A 557 1.80 REMARK 500 O HOH A 437 O HOH A 642 2.09 REMARK 500 OD2 ASP A 260 O HOH A 401 2.10 REMARK 500 O HOH A 626 O HOH A 662 2.10 REMARK 500 O HOH A 663 O HOH A 667 2.13 REMARK 500 O HOH A 467 O HOH A 583 2.15 REMARK 500 OE1 GLN A 89 O HOH A 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -145.21 -168.49 REMARK 500 ASP A 207 62.08 61.71 REMARK 500 ASN A 270 78.58 -108.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 667 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 175 O REMARK 620 2 VAL A 177 O 93.3 REMARK 620 3 ASP A 200 OD1 142.5 116.4 REMARK 620 4 ASP A 200 OD2 170.3 81.1 46.8 REMARK 620 5 HOH A 407 O 87.8 54.3 127.5 82.5 REMARK 620 6 HOH A 447 O 93.9 89.6 107.8 78.3 36.2 REMARK 620 7 HOH A 607 O 87.9 81.3 75.5 98.9 135.1 170.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NYN A 307 RU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD1 REMARK 620 2 NYN A 307 N2 86.7 REMARK 620 3 NYN A 307 S1 87.6 173.3 REMARK 620 4 NYN A 307 S3 93.7 95.9 87.8 REMARK 620 5 NYN A 307 N1 80.6 80.5 95.2 173.4 REMARK 620 6 NYN A 307 S2 176.1 95.5 90.0 89.3 96.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 OD1 REMARK 620 2 HOH A 615 O 98.2 REMARK 620 3 HOH A 619 O 92.2 89.7 REMARK 620 4 HOH A 656 O 131.4 129.4 80.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NYN A 309 RU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 OD1 REMARK 620 2 NYN A 309 N2 87.9 REMARK 620 3 NYN A 309 S1 90.9 175.8 REMARK 620 4 NYN A 309 S3 115.2 95.3 88.9 REMARK 620 5 NYN A 309 N1 67.8 80.8 95.0 175.1 REMARK 620 6 NYN A 309 S2 157.1 91.4 88.1 87.7 89.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NYN A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NYN A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TFS A 310 DBREF 6TXG A 1 279 UNP P06873 PRTK_PARAQ 106 384 SEQADV 6TXG ASP A 207 UNP P06873 SER 312 CONFLICT SEQRES 1 A 279 ALA ALA GLN THR ASN ALA PRO TRP GLY LEU ALA ARG ILE SEQRES 2 A 279 SER SER THR SER PRO GLY THR SER THR TYR TYR TYR ASP SEQRES 3 A 279 GLU SER ALA GLY GLN GLY SER CYS VAL TYR VAL ILE ASP SEQRES 4 A 279 THR GLY ILE GLU ALA SER HIS PRO GLU PHE GLU GLY ARG SEQRES 5 A 279 ALA GLN MET VAL LYS THR TYR TYR TYR SER SER ARG ASP SEQRES 6 A 279 GLY ASN GLY HIS GLY THR HIS CYS ALA GLY THR VAL GLY SEQRES 7 A 279 SER ARG THR TYR GLY VAL ALA LYS LYS THR GLN LEU PHE SEQRES 8 A 279 GLY VAL LYS VAL LEU ASP ASP ASN GLY SER GLY GLN TYR SEQRES 9 A 279 SER THR ILE ILE ALA GLY MET ASP PHE VAL ALA SER ASP SEQRES 10 A 279 LYS ASN ASN ARG ASN CYS PRO LYS GLY VAL VAL ALA SER SEQRES 11 A 279 LEU SER LEU GLY GLY GLY TYR SER SER SER VAL ASN SER SEQRES 12 A 279 ALA ALA ALA ARG LEU GLN SER SER GLY VAL MET VAL ALA SEQRES 13 A 279 VAL ALA ALA GLY ASN ASN ASN ALA ASP ALA ARG ASN TYR SEQRES 14 A 279 SER PRO ALA SER GLU PRO SER VAL CYS THR VAL GLY ALA SEQRES 15 A 279 SER ASP ARG TYR ASP ARG ARG SER SER PHE SER ASN TYR SEQRES 16 A 279 GLY SER VAL LEU ASP ILE PHE GLY PRO GLY THR ASP ILE SEQRES 17 A 279 LEU SER THR TRP ILE GLY GLY SER THR ARG SER ILE SER SEQRES 18 A 279 GLY THR SER MET ALA THR PRO HIS VAL ALA GLY LEU ALA SEQRES 19 A 279 ALA TYR LEU MET THR LEU GLY LYS THR THR ALA ALA SER SEQRES 20 A 279 ALA CYS ARG TYR ILE ALA ASP THR ALA ASN LYS GLY ASP SEQRES 21 A 279 LEU SER ASN ILE PRO PHE GLY THR VAL ASN LEU LEU ALA SEQRES 22 A 279 TYR ASN ASN TYR GLN ALA HET NO3 A 301 4 HET NO3 A 302 4 HET NO3 A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET CA A 306 1 HET NYN A 307 34 HET NA A 308 1 HET NYN A 309 34 HET TFS A 310 8 HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM NYN CHLORIDO(1,2-DIAMINOETHANE-K2N,N')(1,4,7- HETNAM 2 NYN TRITHIACYCLONONANE-K3S,S',S'')RUTHENIUM(II) HETNAM 3 NYN TRIFLUOROMETHANESULFONATE HETNAM NA SODIUM ION HETNAM TFS TRIFLUOROMETHANESULFONIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NO3 3(N O3 1-) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 CA CA 2+ FORMUL 8 NYN 2(C8 H16 N2 RU S3 5-) FORMUL 9 NA NA 1+ FORMUL 11 TFS C H F3 O3 S FORMUL 12 HOH *267(H2 O) HELIX 1 AA1 PRO A 7 SER A 14 1 8 HELIX 2 AA2 HIS A 46 GLU A 50 5 5 HELIX 3 AA3 GLY A 68 SER A 79 1 12 HELIX 4 AA4 GLN A 103 LYS A 118 1 16 HELIX 5 AA5 ASN A 119 ARG A 121 5 3 HELIX 6 AA6 SER A 138 SER A 151 1 14 HELIX 7 AA7 ASP A 165 ARG A 167 5 3 HELIX 8 AA8 GLY A 222 LEU A 240 1 19 HELIX 9 AA9 SER A 247 ALA A 256 1 10 SHEET 1 AA1 2 ALA A 2 GLN A 3 0 SHEET 2 AA1 2 TYR A 23 TYR A 24 -1 O TYR A 23 N GLN A 3 SHEET 1 AA2 7 ALA A 53 THR A 58 0 SHEET 2 AA2 7 GLN A 89 LYS A 94 1 O GLY A 92 N VAL A 56 SHEET 3 AA2 7 SER A 33 ASP A 39 1 N VAL A 37 O PHE A 91 SHEET 4 AA2 7 GLY A 126 LEU A 131 1 O SER A 130 N TYR A 36 SHEET 5 AA2 7 VAL A 153 ALA A 158 1 O MET A 154 N ALA A 129 SHEET 6 AA2 7 CYS A 178 SER A 183 1 O CYS A 178 N VAL A 157 SHEET 7 AA2 7 ILE A 201 PRO A 204 1 O ILE A 201 N GLY A 181 SHEET 1 AA3 2 GLY A 135 GLY A 136 0 SHEET 2 AA3 2 TYR A 169 SER A 170 -1 O SER A 170 N GLY A 135 SHEET 1 AA4 2 ILE A 208 TRP A 212 0 SHEET 2 AA4 2 SER A 216 ILE A 220 -1 O ILE A 220 N ILE A 208 SHEET 1 AA5 2 ASN A 257 LYS A 258 0 SHEET 2 AA5 2 LEU A 271 LEU A 272 -1 O LEU A 272 N ASN A 257 SSBOND 1 CYS A 34 CYS A 123 1555 1555 2.02 SSBOND 2 CYS A 178 CYS A 249 1555 1555 2.06 LINK O PRO A 175 CA A CA A 306 1555 1555 2.69 LINK O VAL A 177 CA A CA A 306 1555 1555 2.44 LINK OD1 ASP A 200 CA A CA A 306 1555 1555 2.98 LINK OD2 ASP A 200 CA A CA A 306 1555 1555 2.42 LINK OD1 ASP A 200 RU BNYN A 307 1555 1555 2.05 LINK OD1 ASP A 260 NA A NA A 308 1555 1555 2.61 LINK OD1 ASP A 260 RU BNYN A 309 1555 1555 2.25 LINK CA A CA A 306 O HOH A 407 1555 1555 2.95 LINK CA A CA A 306 O AHOH A 447 1555 1555 2.25 LINK CA A CA A 306 O AHOH A 607 1555 1555 2.36 LINK NA A NA A 308 O AHOH A 615 1555 1555 2.38 LINK NA A NA A 308 O AHOH A 619 1555 1555 2.32 LINK NA A NA A 308 O AHOH A 656 1555 5555 39.28 CISPEP 1 SER A 170 PRO A 171 0 0.49 SITE 1 AC1 5 MET A 55 VAL A 56 LYS A 57 THR A 58 SITE 2 AC1 5 SER A 63 SITE 1 AC2 7 TYR A 60 TYR A 61 LYS A 94 ASP A 97 SITE 2 AC2 7 ASP A 98 HOH A 550 HOH A 578 SITE 1 AC3 6 SER A 132 LEU A 133 GLY A 160 ASN A 161 SITE 2 AC3 6 THR A 223 SER A 224 SITE 1 AC4 6 LEU A 96 GLY A 102 TYR A 104 ILE A 107 SITE 2 AC4 6 GLY A 134 HOH A 609 SITE 1 AC5 7 PRO A 175 VAL A 177 ASP A 200 NYN A 307 SITE 2 AC5 7 HOH A 407 HOH A 447 HOH A 607 SITE 1 AC6 9 PRO A 175 VAL A 177 SER A 197 VAL A 198 SITE 2 AC6 9 LEU A 199 ASP A 200 CA A 306 HOH A 560 SITE 3 AC6 9 HOH A 607 SITE 1 AC7 5 ASP A 260 NYN A 309 HOH A 615 HOH A 619 SITE 2 AC7 5 HOH A 656 SITE 1 AC8 9 THR A 16 LYS A 258 ASP A 260 NA A 308 SITE 2 AC8 9 HOH A 401 HOH A 419 HOH A 615 HOH A 619 SITE 3 AC8 9 HOH A 656 SITE 1 AC9 7 ARG A 189 ASP A 254 THR A 255 ASN A 263 SITE 2 AC9 7 ILE A 264 PRO A 265 HOH A 602 CRYST1 67.708 67.708 107.314 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014769 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014769 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009318 0.00000