HEADER CELL ADHESION 15-JAN-20 6TY4 TITLE FAK STRUCTURE WITH AMP-PNP FROM SINGLE PARTICLE ANALYSIS OF 2D TITLE 2 CRYSTALS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOCAL ADHESION KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FADK 1,FOCAL ADHESION KINASE-RELATED NONKINASE,P41/P43FRNK, COMPND 5 PROTEIN-TYROSINE KINASE 2,P125FAK,PP125FAK; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: PTK2, FAK, FAK1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS KINASE, FOCAL ADHESION, MEMBRANE, CELL ADHESION EXPDTA ELECTRON MICROSCOPY AUTHOR I.ACEBRON,R.RIGHETTO,N.BIYANI,M.CHAMI,J.BOSKOVIC,H.STAHLBERG,D.LIETHA REVDAT 2 14-OCT-20 6TY4 1 JRNL REVDAT 1 19-AUG-20 6TY4 0 JRNL AUTH I.ACEBRON,R.D.RIGHETTO,C.SCHOENHERR,S.DE BUHR,P.REDONDO, JRNL AUTH 2 J.CULLEY,C.F.RODRIGUEZ,C.DADAY,N.BIYANI,O.LLORCA,A.BYRON, JRNL AUTH 3 M.CHAMI,F.GRATER,J.BOSKOVIC,M.C.FRAME,H.STAHLBERG,D.LIETHA JRNL TITL STRUCTURAL BASIS OF FOCAL ADHESION KINASE ACTIVATION ON JRNL TITL 2 LIPID MEMBRANES. JRNL REF EMBO J. V. 39 04743 2020 JRNL REFN ESSN 1460-2075 JRNL PMID 32779739 JRNL DOI 10.15252/EMBJ.2020104743 REMARK 2 REMARK 2 RESOLUTION. 5.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, IMODFIT, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2AEH REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.960 REMARK 3 NUMBER OF PARTICLES : 548394 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6TY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106134. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : 2D ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : FOCAL ADHESION KINASE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 5.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 40.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 PRO A 30 REMARK 465 GLY A 31 REMARK 465 ALA A 32 REMARK 465 MET A 33 REMARK 465 GLN A 363 REMARK 465 LYS A 364 REMARK 465 GLU A 365 REMARK 465 GLY A 366 REMARK 465 GLU A 367 REMARK 465 ARG A 368 REMARK 465 ALA A 369 REMARK 465 LEU A 370 REMARK 465 PRO A 371 REMARK 465 SER A 372 REMARK 465 ILE A 373 REMARK 465 PRO A 374 REMARK 465 LYS A 375 REMARK 465 LEU A 376 REMARK 465 ALA A 377 REMARK 465 ASN A 378 REMARK 465 ASN A 379 REMARK 465 GLU A 380 REMARK 465 LYS A 381 REMARK 465 GLN A 382 REMARK 465 GLY A 383 REMARK 465 VAL A 384 REMARK 465 ARG A 385 REMARK 465 SER A 386 REMARK 465 HIS A 387 REMARK 465 THR A 388 REMARK 465 VAL A 389 REMARK 465 SER A 390 REMARK 465 VAL A 391 REMARK 465 SER A 392 REMARK 465 GLU A 393 REMARK 465 THR A 394 REMARK 465 GLY B 29 REMARK 465 PRO B 30 REMARK 465 GLY B 31 REMARK 465 ALA B 32 REMARK 465 MET B 33 REMARK 465 GLN B 363 REMARK 465 LYS B 364 REMARK 465 GLU B 365 REMARK 465 GLY B 366 REMARK 465 GLU B 367 REMARK 465 ARG B 368 REMARK 465 ALA B 369 REMARK 465 LEU B 370 REMARK 465 PRO B 371 REMARK 465 SER B 372 REMARK 465 ILE B 373 REMARK 465 PRO B 374 REMARK 465 LYS B 375 REMARK 465 LEU B 376 REMARK 465 ALA B 377 REMARK 465 ASN B 378 REMARK 465 ASN B 379 REMARK 465 GLU B 380 REMARK 465 LYS B 381 REMARK 465 GLN B 382 REMARK 465 GLY B 383 REMARK 465 VAL B 384 REMARK 465 ARG B 385 REMARK 465 SER B 386 REMARK 465 HIS B 387 REMARK 465 THR B 388 REMARK 465 VAL B 389 REMARK 465 SER B 390 REMARK 465 VAL B 391 REMARK 465 SER B 392 REMARK 465 GLU B 393 REMARK 465 THR B 394 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR B 528 OG SER B 531 2.01 REMARK 500 O TYR A 528 OG SER A 531 2.01 REMARK 500 O GLY A 439 O VAL A 451 2.02 REMARK 500 O GLY B 439 O VAL B 451 2.02 REMARK 500 NE1 TRP A 588 OE2 GLU A 614 2.07 REMARK 500 NE1 TRP B 588 OE2 GLU B 614 2.07 REMARK 500 O LEU A 134 OG1 THR A 138 2.08 REMARK 500 O LEU B 134 OG1 THR B 138 2.08 REMARK 500 NE2 HIS B 544 O ASP B 564 2.13 REMARK 500 NE2 HIS A 544 O ASP A 564 2.13 REMARK 500 CG1 ILE B 453 O ILE B 497 2.13 REMARK 500 CG1 ILE A 453 O ILE A 497 2.13 REMARK 500 OH TYR A 128 O ASP A 342 2.16 REMARK 500 OH TYR B 128 O ASP B 342 2.17 REMARK 500 CB SER A 47 OG1 THR B 557 2.18 REMARK 500 OG1 THR A 557 CB SER B 47 2.19 REMARK 500 OD2 ASP A 345 NH1 ARG A 349 2.19 REMARK 500 OD2 ASP B 345 NH1 ARG B 349 2.19 REMARK 500 OG SER B 593 O ARG B 598 2.19 REMARK 500 OG SER A 593 O ARG A 598 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 572 CB GLU A 572 CG 0.115 REMARK 500 TYR A 576 CZ TYR A 576 OH -0.143 REMARK 500 TYR A 577 CZ TYR A 577 OH -0.135 REMARK 500 LYS A 684 CD LYS A 684 CE -0.158 REMARK 500 TYR B 576 CZ TYR B 576 OH -0.142 REMARK 500 TYR B 577 CZ TYR B 577 OH -0.135 REMARK 500 LYS B 684 CD LYS B 684 CE -0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 537 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 LEU A 553 CA - C - N ANGL. DEV. = -15.5 DEGREES REMARK 500 LEU A 553 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 VAL A 554 C - N - CA ANGL. DEV. = -15.6 DEGREES REMARK 500 LYS A 684 CG - CD - CE ANGL. DEV. = 40.6 DEGREES REMARK 500 LYS A 684 CD - CE - NZ ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU B 537 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 LEU B 553 CA - C - N ANGL. DEV. = -15.5 DEGREES REMARK 500 LEU B 553 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 VAL B 554 C - N - CA ANGL. DEV. = -15.5 DEGREES REMARK 500 LYS B 684 CG - CD - CE ANGL. DEV. = 40.6 DEGREES REMARK 500 LYS B 684 CD - CE - NZ ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 -141.29 129.67 REMARK 500 THR A 51 42.62 -102.02 REMARK 500 LYS A 76 75.28 47.15 REMARK 500 LEU A 100 -62.01 -93.41 REMARK 500 LYS A 199 -62.32 -101.48 REMARK 500 ASP A 213 50.86 -95.18 REMARK 500 ASN A 235 -169.55 -103.26 REMARK 500 CYS A 260 -171.97 -173.05 REMARK 500 SER A 265 -4.71 -141.84 REMARK 500 LEU A 293 -35.44 -132.25 REMARK 500 GLN A 300 -63.83 -95.08 REMARK 500 ARG A 312 48.70 -82.42 REMARK 500 PRO A 332 0.03 -63.65 REMARK 500 THR A 355 27.89 -140.62 REMARK 500 ASP A 396 118.10 -160.62 REMARK 500 ASP A 402 -71.54 -73.68 REMARK 500 GLU A 403 -60.33 -139.63 REMARK 500 GLU A 404 -93.99 50.71 REMARK 500 PRO A 410 -140.79 -95.25 REMARK 500 ARG A 413 3.56 -154.91 REMARK 500 SER A 443 -152.09 -145.50 REMARK 500 PRO A 444 -94.28 -76.40 REMARK 500 HIS A 482 27.80 -141.12 REMARK 500 ILE A 487 -53.25 -129.13 REMARK 500 ARG A 541 70.63 60.38 REMARK 500 ARG A 545 -18.38 74.19 REMARK 500 ASP A 546 44.57 -152.28 REMARK 500 ASP A 564 82.13 51.86 REMARK 500 GLU A 572 27.50 -68.86 REMARK 500 ASP A 573 -15.23 60.56 REMARK 500 THR A 575 -110.40 58.84 REMARK 500 LYS A 578 -146.29 -86.81 REMARK 500 SER A 580 -91.21 -118.84 REMARK 500 PHE A 596 13.49 -140.37 REMARK 500 SER B 47 -141.29 129.67 REMARK 500 THR B 51 42.70 -102.07 REMARK 500 LYS B 76 75.27 47.22 REMARK 500 LEU B 100 -61.97 -93.40 REMARK 500 LYS B 199 -62.35 -101.43 REMARK 500 ASP B 213 50.88 -95.16 REMARK 500 ASN B 235 -169.54 -103.23 REMARK 500 CYS B 260 -171.98 -173.10 REMARK 500 SER B 265 -4.75 -141.81 REMARK 500 LEU B 293 -35.41 -132.28 REMARK 500 GLN B 300 -63.88 -95.05 REMARK 500 ARG B 312 48.64 -82.40 REMARK 500 PRO B 332 0.01 -63.63 REMARK 500 THR B 355 27.85 -140.60 REMARK 500 ASP B 396 118.13 -160.62 REMARK 500 ASP B 402 -71.55 -73.69 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 265 TRP A 266 145.29 REMARK 500 VAL A 351 ASN A 352 149.35 REMARK 500 MET A 617 HIS A 618 -149.02 REMARK 500 SER B 265 TRP B 266 145.34 REMARK 500 VAL B 351 ASN B 352 149.37 REMARK 500 MET B 617 HIS B 618 -149.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 48 -14.38 REMARK 500 LEU A 553 -13.32 REMARK 500 GLU B 48 -14.40 REMARK 500 LEU B 553 -13.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 564 OD1 REMARK 620 2 ASP A 564 OD2 52.2 REMARK 620 3 ANP A 702 O1B 78.9 77.2 REMARK 620 4 ANP A 702 O2G 128.1 77.3 78.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 564 OD1 REMARK 620 2 ASP B 564 OD2 52.3 REMARK 620 3 ANP B 702 O2G 128.1 77.4 REMARK 620 4 ANP B 702 O1B 79.0 77.2 78.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10616 RELATED DB: EMDB REMARK 900 FAK STRUCTURE WITH AMP-PNP FROM SINGLE PARTICLE ANALYSIS OF 2D REMARK 900 CRYSTALS DBREF 6TY4 A 30 686 UNP Q00944 FAK1_CHICK 30 686 DBREF 6TY4 B 30 686 UNP Q00944 FAK1_CHICK 30 686 SEQADV 6TY4 GLY A 29 UNP Q00944 EXPRESSION TAG SEQADV 6TY4 GLY B 29 UNP Q00944 EXPRESSION TAG SEQRES 1 A 658 GLY PRO GLY ALA MET GLU ARG VAL LEU LYS VAL PHE HIS SEQRES 2 A 658 TYR PHE GLU ASN SER SER GLU PRO THR THR TRP ALA SER SEQRES 3 A 658 ILE ILE ARG HIS GLY ASP ALA THR ASP VAL ARG GLY ILE SEQRES 4 A 658 ILE GLN LYS ILE VAL ASP CYS HIS LYS VAL LYS ASN VAL SEQRES 5 A 658 ALA CYS TYR GLY LEU ARG LEU SER HIS LEU GLN SER GLU SEQRES 6 A 658 GLU VAL HIS TRP LEU HIS LEU ASP MET GLY VAL SER ASN SEQRES 7 A 658 VAL ARG GLU LYS PHE GLU LEU ALA HIS PRO PRO GLU GLU SEQRES 8 A 658 TRP LYS TYR GLU LEU ARG ILE ARG TYR LEU PRO LYS GLY SEQRES 9 A 658 PHE LEU ASN GLN PHE THR GLU ASP LYS PRO THR LEU ASN SEQRES 10 A 658 PHE PHE TYR GLN GLN VAL LYS ASN ASP TYR MET LEU GLU SEQRES 11 A 658 ILE ALA ASP GLN VAL ASP GLN GLU ILE ALA LEU LYS LEU SEQRES 12 A 658 GLY CYS LEU GLU ILE ARG ARG SER TYR GLY GLU MET ARG SEQRES 13 A 658 GLY ASN ALA LEU GLU LYS LYS SER ASN TYR GLU VAL LEU SEQRES 14 A 658 GLU LYS ASP VAL GLY LEU ARG ARG PHE PHE PRO LYS SER SEQRES 15 A 658 LEU LEU ASP SER VAL LYS ALA LYS THR LEU ARG LYS LEU SEQRES 16 A 658 ILE GLN GLN THR PHE ARG GLN PHE ALA ASN LEU ASN ARG SEQRES 17 A 658 GLU GLU SER ILE LEU LYS PHE PHE GLU ILE LEU SER PRO SEQRES 18 A 658 VAL TYR ARG PHE ASP LYS GLU CYS PHE LYS CYS ALA LEU SEQRES 19 A 658 GLY SER SER TRP ILE ILE SER VAL GLU LEU ALA ILE GLY SEQRES 20 A 658 PRO GLU GLU GLY ILE SER TYR LEU THR ASP LYS GLY ALA SEQRES 21 A 658 ASN PRO THR HIS LEU ALA ASP PHE ASN GLN VAL GLN THR SEQRES 22 A 658 ILE GLN TYR SER ASN SER GLU ASP LYS ASP ARG LYS GLY SEQRES 23 A 658 MET LEU GLN LEU LYS ILE ALA GLY ALA PRO GLU PRO LEU SEQRES 24 A 658 THR VAL THR ALA PRO SER LEU THR ILE ALA GLU ASN MET SEQRES 25 A 658 ALA ASP LEU ILE ASP GLY TYR CYS ARG LEU VAL ASN GLY SEQRES 26 A 658 ALA THR GLN SER PHE ILE ILE ARG PRO GLN LYS GLU GLY SEQRES 27 A 658 GLU ARG ALA LEU PRO SER ILE PRO LYS LEU ALA ASN ASN SEQRES 28 A 658 GLU LYS GLN GLY VAL ARG SER HIS THR VAL SER VAL SER SEQRES 29 A 658 GLU THR ASP ASP TYR ALA GLU ILE ILE ASP GLU GLU ASP SEQRES 30 A 658 THR TYR THR MET PRO SER THR ARG ASP TYR GLU ILE GLN SEQRES 31 A 658 ARG GLU ARG ILE GLU LEU GLY ARG CYS ILE GLY GLU GLY SEQRES 32 A 658 GLN PHE GLY ASP VAL HIS GLN GLY ILE TYR MET SER PRO SEQRES 33 A 658 GLU ASN PRO ALA MET ALA VAL ALA ILE LYS THR CYS LYS SEQRES 34 A 658 ASN CYS THR SER ASP SER VAL ARG GLU LYS PHE LEU GLN SEQRES 35 A 658 GLU ALA LEU THR MET ARG GLN PHE ASP HIS PRO HIS ILE SEQRES 36 A 658 VAL LYS LEU ILE GLY VAL ILE THR GLU ASN PRO VAL TRP SEQRES 37 A 658 ILE ILE MET GLU LEU CYS THR LEU GLY GLU LEU ARG SER SEQRES 38 A 658 PHE LEU GLN VAL ARG LYS PHE SER LEU ASP LEU ALA SER SEQRES 39 A 658 LEU ILE LEU TYR ALA TYR GLN LEU SER THR ALA LEU ALA SEQRES 40 A 658 TYR LEU GLU SER LYS ARG PHE VAL HIS ARG ASP ILE ALA SEQRES 41 A 658 ALA ARG ASN VAL LEU VAL SER ALA THR ASP CYS VAL LYS SEQRES 42 A 658 LEU GLY ASP PHE GLY LEU SER ARG TYR MET GLU ASP SER SEQRES 43 A 658 THR TYR TYR LYS ALA SER LYS GLY LYS LEU PRO ILE LYS SEQRES 44 A 658 TRP MET ALA PRO GLU SER ILE ASN PHE ARG ARG PHE THR SEQRES 45 A 658 SER ALA SER ASP VAL TRP MET PHE GLY VAL CYS MET TRP SEQRES 46 A 658 GLU ILE LEU MET HIS GLY VAL LYS PRO PHE GLN GLY VAL SEQRES 47 A 658 LYS ASN ASN ASP VAL ILE GLY ARG ILE GLU ASN GLY GLU SEQRES 48 A 658 ARG LEU PRO MET PRO PRO ASN CYS PRO PRO THR LEU TYR SEQRES 49 A 658 SER LEU MET THR LYS CYS TRP ALA TYR ASP PRO SER ARG SEQRES 50 A 658 ARG PRO ARG PHE THR GLU LEU LYS ALA GLN LEU SER THR SEQRES 51 A 658 ILE LEU GLU GLU GLU LYS LEU GLN SEQRES 1 B 658 GLY PRO GLY ALA MET GLU ARG VAL LEU LYS VAL PHE HIS SEQRES 2 B 658 TYR PHE GLU ASN SER SER GLU PRO THR THR TRP ALA SER SEQRES 3 B 658 ILE ILE ARG HIS GLY ASP ALA THR ASP VAL ARG GLY ILE SEQRES 4 B 658 ILE GLN LYS ILE VAL ASP CYS HIS LYS VAL LYS ASN VAL SEQRES 5 B 658 ALA CYS TYR GLY LEU ARG LEU SER HIS LEU GLN SER GLU SEQRES 6 B 658 GLU VAL HIS TRP LEU HIS LEU ASP MET GLY VAL SER ASN SEQRES 7 B 658 VAL ARG GLU LYS PHE GLU LEU ALA HIS PRO PRO GLU GLU SEQRES 8 B 658 TRP LYS TYR GLU LEU ARG ILE ARG TYR LEU PRO LYS GLY SEQRES 9 B 658 PHE LEU ASN GLN PHE THR GLU ASP LYS PRO THR LEU ASN SEQRES 10 B 658 PHE PHE TYR GLN GLN VAL LYS ASN ASP TYR MET LEU GLU SEQRES 11 B 658 ILE ALA ASP GLN VAL ASP GLN GLU ILE ALA LEU LYS LEU SEQRES 12 B 658 GLY CYS LEU GLU ILE ARG ARG SER TYR GLY GLU MET ARG SEQRES 13 B 658 GLY ASN ALA LEU GLU LYS LYS SER ASN TYR GLU VAL LEU SEQRES 14 B 658 GLU LYS ASP VAL GLY LEU ARG ARG PHE PHE PRO LYS SER SEQRES 15 B 658 LEU LEU ASP SER VAL LYS ALA LYS THR LEU ARG LYS LEU SEQRES 16 B 658 ILE GLN GLN THR PHE ARG GLN PHE ALA ASN LEU ASN ARG SEQRES 17 B 658 GLU GLU SER ILE LEU LYS PHE PHE GLU ILE LEU SER PRO SEQRES 18 B 658 VAL TYR ARG PHE ASP LYS GLU CYS PHE LYS CYS ALA LEU SEQRES 19 B 658 GLY SER SER TRP ILE ILE SER VAL GLU LEU ALA ILE GLY SEQRES 20 B 658 PRO GLU GLU GLY ILE SER TYR LEU THR ASP LYS GLY ALA SEQRES 21 B 658 ASN PRO THR HIS LEU ALA ASP PHE ASN GLN VAL GLN THR SEQRES 22 B 658 ILE GLN TYR SER ASN SER GLU ASP LYS ASP ARG LYS GLY SEQRES 23 B 658 MET LEU GLN LEU LYS ILE ALA GLY ALA PRO GLU PRO LEU SEQRES 24 B 658 THR VAL THR ALA PRO SER LEU THR ILE ALA GLU ASN MET SEQRES 25 B 658 ALA ASP LEU ILE ASP GLY TYR CYS ARG LEU VAL ASN GLY SEQRES 26 B 658 ALA THR GLN SER PHE ILE ILE ARG PRO GLN LYS GLU GLY SEQRES 27 B 658 GLU ARG ALA LEU PRO SER ILE PRO LYS LEU ALA ASN ASN SEQRES 28 B 658 GLU LYS GLN GLY VAL ARG SER HIS THR VAL SER VAL SER SEQRES 29 B 658 GLU THR ASP ASP TYR ALA GLU ILE ILE ASP GLU GLU ASP SEQRES 30 B 658 THR TYR THR MET PRO SER THR ARG ASP TYR GLU ILE GLN SEQRES 31 B 658 ARG GLU ARG ILE GLU LEU GLY ARG CYS ILE GLY GLU GLY SEQRES 32 B 658 GLN PHE GLY ASP VAL HIS GLN GLY ILE TYR MET SER PRO SEQRES 33 B 658 GLU ASN PRO ALA MET ALA VAL ALA ILE LYS THR CYS LYS SEQRES 34 B 658 ASN CYS THR SER ASP SER VAL ARG GLU LYS PHE LEU GLN SEQRES 35 B 658 GLU ALA LEU THR MET ARG GLN PHE ASP HIS PRO HIS ILE SEQRES 36 B 658 VAL LYS LEU ILE GLY VAL ILE THR GLU ASN PRO VAL TRP SEQRES 37 B 658 ILE ILE MET GLU LEU CYS THR LEU GLY GLU LEU ARG SER SEQRES 38 B 658 PHE LEU GLN VAL ARG LYS PHE SER LEU ASP LEU ALA SER SEQRES 39 B 658 LEU ILE LEU TYR ALA TYR GLN LEU SER THR ALA LEU ALA SEQRES 40 B 658 TYR LEU GLU SER LYS ARG PHE VAL HIS ARG ASP ILE ALA SEQRES 41 B 658 ALA ARG ASN VAL LEU VAL SER ALA THR ASP CYS VAL LYS SEQRES 42 B 658 LEU GLY ASP PHE GLY LEU SER ARG TYR MET GLU ASP SER SEQRES 43 B 658 THR TYR TYR LYS ALA SER LYS GLY LYS LEU PRO ILE LYS SEQRES 44 B 658 TRP MET ALA PRO GLU SER ILE ASN PHE ARG ARG PHE THR SEQRES 45 B 658 SER ALA SER ASP VAL TRP MET PHE GLY VAL CYS MET TRP SEQRES 46 B 658 GLU ILE LEU MET HIS GLY VAL LYS PRO PHE GLN GLY VAL SEQRES 47 B 658 LYS ASN ASN ASP VAL ILE GLY ARG ILE GLU ASN GLY GLU SEQRES 48 B 658 ARG LEU PRO MET PRO PRO ASN CYS PRO PRO THR LEU TYR SEQRES 49 B 658 SER LEU MET THR LYS CYS TRP ALA TYR ASP PRO SER ARG SEQRES 50 B 658 ARG PRO ARG PHE THR GLU LEU LYS ALA GLN LEU SER THR SEQRES 51 B 658 ILE LEU GLU GLU GLU LYS LEU GLN HET MG A 701 1 HET ANP A 702 31 HET MG B 701 1 HET ANP B 702 31 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 MG 2(MG 2+) FORMUL 4 ANP 2(C10 H17 N6 O12 P3) HELIX 1 AA1 ASP A 63 CYS A 74 1 12 HELIX 2 AA2 GLY A 103 PHE A 111 1 9 HELIX 3 AA3 GLY A 132 GLU A 139 1 8 HELIX 4 AA4 ASP A 140 ILE A 159 1 20 HELIX 5 AA5 ASP A 164 TYR A 180 1 17 HELIX 6 AA6 ASN A 186 GLU A 189 5 4 HELIX 7 AA7 LYS A 190 ASP A 200 1 11 HELIX 8 AA8 PRO A 208 ASP A 213 1 6 HELIX 9 AA9 LYS A 216 ARG A 229 1 14 HELIX 10 AB1 ASN A 235 SER A 248 1 14 HELIX 11 AB2 ASP A 295 VAL A 299 5 5 HELIX 12 AB3 SER A 333 ASN A 352 1 20 HELIX 13 AB4 SER A 461 ARG A 476 1 16 HELIX 14 AB5 LEU A 507 ARG A 514 1 8 HELIX 15 AB6 LYS A 515 LEU A 518 5 4 HELIX 16 AB7 ASP A 519 ARG A 541 1 23 HELIX 17 AB8 ALA A 548 ARG A 550 5 3 HELIX 18 AB9 ALA A 590 ARG A 597 1 8 HELIX 19 AC1 THR A 600 MET A 617 1 18 HELIX 20 AC2 LYS A 627 ASN A 637 1 11 HELIX 21 AC3 PRO A 648 TRP A 659 1 12 HELIX 22 AC4 ARG A 668 GLN A 686 1 19 HELIX 23 AC5 ASP B 63 CYS B 74 1 12 HELIX 24 AC6 GLY B 103 PHE B 111 1 9 HELIX 25 AC7 GLY B 132 GLU B 139 1 8 HELIX 26 AC8 ASP B 140 ILE B 159 1 20 HELIX 27 AC9 ASP B 164 TYR B 180 1 17 HELIX 28 AD1 ASN B 186 GLU B 189 5 4 HELIX 29 AD2 LYS B 190 ASP B 200 1 11 HELIX 30 AD3 PRO B 208 ASP B 213 1 6 HELIX 31 AD4 LYS B 216 ARG B 229 1 14 HELIX 32 AD5 ASN B 235 SER B 248 1 14 HELIX 33 AD6 ASP B 295 VAL B 299 5 5 HELIX 34 AD7 SER B 333 ASN B 352 1 20 HELIX 35 AD8 SER B 461 ARG B 476 1 16 HELIX 36 AD9 LEU B 507 ARG B 514 1 8 HELIX 37 AE1 LYS B 515 LEU B 518 5 4 HELIX 38 AE2 ASP B 519 ARG B 541 1 23 HELIX 39 AE3 ALA B 548 ARG B 550 5 3 HELIX 40 AE4 ALA B 590 ARG B 597 1 8 HELIX 41 AE5 THR B 600 MET B 617 1 18 HELIX 42 AE6 LYS B 627 ASN B 637 1 11 HELIX 43 AE7 PRO B 648 TRP B 659 1 12 HELIX 44 AE8 ARG B 668 GLN B 686 1 19 SHEET 1 AA1 6 TRP A 97 LEU A 98 0 SHEET 2 AA1 6 TYR A 83 HIS A 89 -1 N LEU A 85 O LEU A 98 SHEET 3 AA1 6 TRP A 120 ILE A 126 -1 O GLU A 123 N ARG A 86 SHEET 4 AA1 6 ARG A 35 PHE A 40 1 N PHE A 40 O LEU A 124 SHEET 5 AA1 6 ALA A 53 HIS A 58 -1 O ILE A 56 N LEU A 37 SHEET 6 AA1 6 GLU A 399 ILE A 400 -1 O GLU A 399 N ARG A 57 SHEET 1 AA2 7 THR A 291 ALA A 294 0 SHEET 2 AA2 7 GLY A 279 TYR A 282 -1 N TYR A 282 O THR A 291 SHEET 3 AA2 7 ILE A 268 GLY A 275 -1 N GLY A 275 O GLY A 279 SHEET 4 AA2 7 PHE A 258 LEU A 262 -1 N PHE A 258 O LEU A 272 SHEET 5 AA2 7 VAL A 329 ALA A 331 -1 O THR A 330 N ALA A 261 SHEET 6 AA2 7 GLY A 314 GLN A 317 -1 N LEU A 316 O VAL A 329 SHEET 7 AA2 7 GLN A 303 ASN A 306 -1 N SER A 305 O MET A 315 SHEET 1 AA3 4 GLY A 429 GLU A 430 0 SHEET 2 AA3 4 ASP A 435 TYR A 441 -1 O VAL A 436 N GLY A 429 SHEET 3 AA3 4 MET A 449 LYS A 454 -1 O ILE A 453 N HIS A 437 SHEET 4 AA3 4 MET A 499 GLU A 500 -1 O MET A 499 N ALA A 452 SHEET 1 AA4 3 GLY A 505 GLU A 506 0 SHEET 2 AA4 3 VAL A 552 ALA A 556 -1 O VAL A 554 N GLY A 505 SHEET 3 AA4 3 CYS A 559 LEU A 562 -1 O LYS A 561 N LEU A 553 SHEET 1 AA5 6 TRP B 97 LEU B 98 0 SHEET 2 AA5 6 TYR B 83 HIS B 89 -1 N LEU B 85 O LEU B 98 SHEET 3 AA5 6 TRP B 120 ILE B 126 -1 O GLU B 123 N ARG B 86 SHEET 4 AA5 6 ARG B 35 PHE B 40 1 N PHE B 40 O LEU B 124 SHEET 5 AA5 6 ALA B 53 HIS B 58 -1 O ILE B 56 N LEU B 37 SHEET 6 AA5 6 GLU B 399 ILE B 400 -1 O GLU B 399 N ARG B 57 SHEET 1 AA6 7 THR B 291 ALA B 294 0 SHEET 2 AA6 7 GLY B 279 TYR B 282 -1 N TYR B 282 O THR B 291 SHEET 3 AA6 7 ILE B 268 GLY B 275 -1 N GLY B 275 O GLY B 279 SHEET 4 AA6 7 PHE B 258 LEU B 262 -1 N PHE B 258 O LEU B 272 SHEET 5 AA6 7 VAL B 329 ALA B 331 -1 O THR B 330 N ALA B 261 SHEET 6 AA6 7 GLY B 314 GLN B 317 -1 N LEU B 316 O VAL B 329 SHEET 7 AA6 7 GLN B 303 ASN B 306 -1 N SER B 305 O MET B 315 SHEET 1 AA7 4 GLY B 429 GLU B 430 0 SHEET 2 AA7 4 ASP B 435 TYR B 441 -1 O VAL B 436 N GLY B 429 SHEET 3 AA7 4 MET B 449 LYS B 454 -1 O ILE B 453 N HIS B 437 SHEET 4 AA7 4 MET B 499 GLU B 500 -1 O MET B 499 N ALA B 452 SHEET 1 AA8 3 GLY B 505 GLU B 506 0 SHEET 2 AA8 3 VAL B 552 ALA B 556 -1 O VAL B 554 N GLY B 505 SHEET 3 AA8 3 CYS B 559 LEU B 562 -1 O LYS B 561 N LEU B 553 LINK OD1 ASP A 564 MG MG A 701 1555 1555 2.31 LINK OD2 ASP A 564 MG MG A 701 1555 1555 2.61 LINK MG MG A 701 O1B ANP A 702 1555 1555 2.33 LINK MG MG A 701 O2G ANP A 702 1555 1555 1.84 LINK OD1 ASP B 564 MG MG B 701 1555 1555 2.31 LINK OD2 ASP B 564 MG MG B 701 1555 1555 2.61 LINK MG MG B 701 O2G ANP B 702 1555 1555 1.84 LINK MG MG B 701 O1B ANP B 702 1555 1555 2.33 CISPEP 1 TYR A 407 THR A 408 0 6.65 CISPEP 2 ASN A 493 PRO A 494 0 -16.69 CISPEP 3 TYR B 407 THR B 408 0 6.65 CISPEP 4 ASN B 493 PRO B 494 0 -16.66 SITE 1 AC1 2 ASP A 564 ANP A 702 SITE 1 AC2 15 GLY A 429 GLU A 430 GLY A 431 GLN A 432 SITE 2 AC2 15 VAL A 436 LYS A 454 GLU A 500 LEU A 501 SITE 3 AC2 15 CYS A 502 GLU A 506 ARG A 550 ASN A 551 SITE 4 AC2 15 LEU A 553 ASP A 564 MG A 701 SITE 1 AC3 2 ASP B 564 ANP B 702 SITE 1 AC4 15 GLY B 429 GLU B 430 GLY B 431 GLN B 432 SITE 2 AC4 15 VAL B 436 LYS B 454 GLU B 500 LEU B 501 SITE 3 AC4 15 CYS B 502 GLU B 506 ARG B 550 ASN B 551 SITE 4 AC4 15 LEU B 553 ASP B 564 MG B 701 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000