HEADER VIRAL PROTEIN, TRANSFERASE/RNA 08-AUG-19 6TY9 TITLE IN SITU STRUCTURE OF BMCPV RNA DEPENDENT RNA POLYMERASE AT INITIATION TITLE 2 STATE CAVEAT 6TY9 RESIDUES A M1 AND GTP M2 THAT ARE NEXT TO EACH OTHER IN THE CAVEAT 2 6TY9 SAMPLE SEQUENCE ARE NOT PROPERLY LINKED. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: VIRAL STRUCTURAL PROTEIN 4; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: TRANSCRIPT; COMPND 9 CHAIN: M; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: NON-TEMPLATE RNA (5'-D(*(GTA))- COMPND 12 R(P*GP*UP*AP*AP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'); COMPND 13 CHAIN: N; COMPND 14 MOL_ID: 5; COMPND 15 MOLECULE: TEMPLATE RNA (5'- COMPND 16 R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*UP*UP*AP*CP*U)-3'); COMPND 17 CHAIN: T SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS; SOURCE 3 ORGANISM_COMMON: BMCPV; SOURCE 4 ORGANISM_TAXID: 110829; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: BOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS; SOURCE 7 ORGANISM_COMMON: BMCPV; SOURCE 8 ORGANISM_TAXID: 110829; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: BOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS; SOURCE 11 ORGANISM_COMMON: BMCPV; SOURCE 12 ORGANISM_TAXID: 110829; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: BOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS; SOURCE 15 ORGANISM_COMMON: BMCPV; SOURCE 16 ORGANISM_TAXID: 110829; SOURCE 17 MOL_ID: 5; SOURCE 18 ORGANISM_SCIENTIFIC: BOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS; SOURCE 19 ORGANISM_COMMON: BMCPV; SOURCE 20 ORGANISM_TAXID: 110829 KEYWDS RDRP-RNA COMPLEX, INITIATION, UNWINDING, CAP-BINDING, VIRAL PROTEIN, KEYWDS 2 TRANSFERASE-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Y.X.CUI,Y.N.ZHANG,J.C.SUN,Z.H.ZHOU REVDAT 3 20-MAR-24 6TY9 1 LINK REVDAT 2 27-NOV-19 6TY9 1 JRNL REVDAT 1 20-NOV-19 6TY9 0 JRNL AUTH Y.CUI,Y.ZHANG,K.ZHOU,J.SUN,Z.H.ZHOU JRNL TITL CONSERVATIVE TRANSCRIPTION IN THREE STEPS VISUALIZED IN A JRNL TITL 2 DOUBLE-STRANDED RNA VIRUS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 1023 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31695188 JRNL DOI 10.1038/S41594-019-0320-0 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 302003 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6TY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243499. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BOMBYX MORI CYPOVIRUS 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, M, N, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 3 REMARK 465 ASN A 4 REMARK 465 THR A 1213 REMARK 465 SER A 1214 REMARK 465 GLN A 1215 REMARK 465 GLY A 1216 REMARK 465 ALA A 1217 REMARK 465 ILE A 1218 REMARK 465 LEU A 1219 REMARK 465 PRO A 1220 REMARK 465 GLU A 1221 REMARK 465 ALA A 1222 REMARK 465 ASP A 1223 REMARK 465 ASN A 1224 REMARK 465 VAL A 1225 REMARK 465 GLN B 24 REMARK 465 ILE B 25 REMARK 465 ASN B 26 REMARK 465 GLN B 27 REMARK 465 GLU B 28 REMARK 465 ILE B 29 REMARK 465 LYS B 30 REMARK 465 PRO B 31 REMARK 465 THR B 32 REMARK 465 THR B 33 REMARK 465 ILE B 34 REMARK 465 LYS B 35 REMARK 465 LYS B 36 REMARK 465 LYS B 37 REMARK 465 GLU B 38 REMARK 465 LEU B 39 REMARK 465 LYS B 88 REMARK 465 GLY B 89 REMARK 465 THR B 90 REMARK 465 PRO B 91 REMARK 465 LYS B 92 REMARK 465 ALA B 93 REMARK 465 GLN B 94 REMARK 465 ILE B 95 REMARK 465 ASP B 96 REMARK 465 THR B 97 REMARK 465 LEU B 98 REMARK 465 LYS B 99 REMARK 465 MET B 100 REMARK 465 ASN B 101 REMARK 465 GLY B 102 REMARK 465 LEU B 103 REMARK 465 THR B 104 REMARK 465 VAL B 105 REMARK 465 VAL B 106 REMARK 465 SER B 107 REMARK 465 LYS B 108 REMARK 465 SER B 109 REMARK 465 ARG B 110 REMARK 465 ARG B 111 REMARK 465 ASN B 112 REMARK 465 ASN B 113 REMARK 465 LYS B 114 REMARK 465 LYS B 115 REMARK 465 LYS B 116 REMARK 465 PRO B 117 REMARK 465 VAL B 118 REMARK 465 SER B 119 REMARK 465 ASP B 120 REMARK 465 THR B 121 REMARK 465 THR B 122 REMARK 465 ALA B 123 REMARK 465 THR B 124 REMARK 465 ILE B 125 REMARK 465 ASP B 126 REMARK 465 GLU B 127 REMARK 465 ASN B 128 REMARK 465 THR B 129 REMARK 465 ASP B 130 REMARK 465 HIS B 561 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -60.56 -95.73 REMARK 500 GLN A 161 15.64 55.14 REMARK 500 ASP A 240 -60.15 -101.81 REMARK 500 PRO A 289 -179.66 -67.34 REMARK 500 THR A 422 4.78 -66.64 REMARK 500 PHE A 456 30.57 -95.77 REMARK 500 ARG A 485 -176.67 -69.04 REMARK 500 ASN A 525 -167.89 -125.68 REMARK 500 SER A 639 -9.32 72.71 REMARK 500 THR A 673 -61.40 -94.48 REMARK 500 ASN A 718 31.00 -142.82 REMARK 500 THR A 747 49.56 -88.58 REMARK 500 ASN A 754 -9.24 66.73 REMARK 500 ARG A 773 88.81 -153.86 REMARK 500 TYR A 817 -169.37 -121.85 REMARK 500 ARG A 841 13.33 58.80 REMARK 500 ASN A 880 68.81 60.70 REMARK 500 LYS A 942 -10.81 72.21 REMARK 500 GLU A 945 6.08 55.41 REMARK 500 TYR A1088 0.60 -67.11 REMARK 500 ASN B 64 28.39 45.07 REMARK 500 ASP B 160 32.21 -97.17 REMARK 500 THR B 300 35.64 -99.38 REMARK 500 ALA B 499 152.41 -49.83 REMARK 500 ARG B 522 61.26 61.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 548 O REMARK 620 2 ASP A 680 OD2 118.7 REMARK 620 3 GTP M 2 O3A 158.7 80.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 680 OD1 REMARK 620 2 ASP A 680 OD2 47.1 REMARK 620 3 GTP M 2 O1A 87.4 82.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-20582 RELATED DB: EMDB REMARK 900 IN SITU STRUCTURE OF BMCPV RNA DEPENDENT RNA POLYMERASE AT REMARK 900 INITIATION STATE DBREF 6TY9 A 1 1225 UNP Q993A4 Q993A4_CPVBM 1 1225 DBREF 6TY9 B 1 561 UNP Q9IR43 Q9IR43_CPVBM 1 561 DBREF 6TY9 M 1 2 PDB 6TY9 6TY9 1 2 DBREF 6TY9 N 1 19 PDB 6TY9 6TY9 1 19 DBREF 6TY9 T 1 19 PDB 6TY9 6TY9 1 19 SEQRES 1 A 1225 MET LEU PRO ASN THR GLU LEU TYR ASN THR ILE PHE SER SEQRES 2 A 1225 GLU THR ARG LYS PHE THR ARG GLU SER PHE LYS GLU ILE SEQRES 3 A 1225 GLU HIS LEU THR ALA LYS LEU ALA ASN ASP ARG VAL ALA SEQRES 4 A 1225 ARG HIS ASP PHE LEU PHE ASN ASN SER ILE ALA LEU ILE SEQRES 5 A 1225 SER ASP TYR SER GLY GLU ASP SER ASN GLY ASN GLN LEU SEQRES 6 A 1225 GLN ALA THR VAL THR ILE PRO ASN GLU ILE THR ASN PRO SEQRES 7 A 1225 LYS GLU TYR ASP PRO SER ASP TYR PRO LEU ALA GLU ASP SEQRES 8 A 1225 GLU SER PHE PHE LYS GLN GLY HIS LYS TYR ASP TYR LEU SEQRES 9 A 1225 VAL THR PHE ARG ALA GLY SER LEU THR ASN THR TYR GLU SEQRES 10 A 1225 PRO LYS THR LYS MET TYR LYS LEU HIS ALA ALA LEU ASP SEQRES 11 A 1225 LYS LEU MET HIS VAL LYS GLN ARG LYS SER ARG PHE ALA SEQRES 12 A 1225 ASP LEU TRP ARG GLU LEU CYS ALA VAL ILE ALA SER LEU SEQRES 13 A 1225 ASP VAL TRP TYR GLN THR THR ASN TYR PRO LEU ARG THR SEQRES 14 A 1225 TYR VAL LYS LEU LEU PHE HIS LYS GLY ASP GLU PHE PRO SEQRES 15 A 1225 PHE TYR GLU SER PRO SER GLN ASP LYS ILE ILE PHE ASN SEQRES 16 A 1225 ASP LYS SER VAL ALA SER ILE LEU PRO THR PHE VAL TYR SEQRES 17 A 1225 THR CYS CYS GLN VAL GLY THR ALA ILE MET SER GLY ILE SEQRES 18 A 1225 LEU THR HIS VAL GLU SER ILE VAL ALA MET ASN HIS PHE SEQRES 19 A 1225 LEU HIS CYS ALA LYS ASP SER TYR ILE ASP GLU LYS LEU SEQRES 20 A 1225 LYS ILE LYS GLY ILE GLY ARG SER TRP TYR GLN GLU ALA SEQRES 21 A 1225 LEU HIS ASN VAL GLY ARG ALA THR VAL PRO VAL TRP SER SEQRES 22 A 1225 GLN PHE ASN GLU VAL ILE GLY HIS ARG THR LYS THR THR SEQRES 23 A 1225 SER GLU PRO HIS PHE VAL SER SER THR PHE ILE SER LEU SEQRES 24 A 1225 ARG ALA LYS ARG ALA GLU LEU LEU TYR PRO GLU PHE ASN SEQRES 25 A 1225 GLU TYR ILE ASN ARG ALA LEU ARG LEU SER LYS THR GLN SEQRES 26 A 1225 ASN ASP VAL ALA ASN TYR TYR ALA ALA CYS ARG ALA MET SEQRES 27 A 1225 THR ASN ASP GLY THR PHE LEU ALA THR LEU THR GLU LEU SEQRES 28 A 1225 SER LEU ASP ALA ALA VAL PHE PRO ARG ILE GLU GLN ARG SEQRES 29 A 1225 LEU VAL THR ARG PRO ALA VAL LEU MET SER ASN THR ARG SEQRES 30 A 1225 HIS GLU SER LEU LYS GLN LYS TYR ALA ASN GLY VAL GLY SEQRES 31 A 1225 SER ILE ALA GLN SER TYR LEU SER SER PHE THR ASP GLU SEQRES 32 A 1225 ILE ALA LYS ARG VAL ASN GLY ILE HIS HIS ASP GLU ALA SEQRES 33 A 1225 TRP LEU ASN PHE LEU THR THR SER SER PRO GLY ARG LYS SEQRES 34 A 1225 LEU THR GLU ILE GLU LYS LEU GLU VAL GLY GLY ASP VAL SEQRES 35 A 1225 ALA ALA TRP SER ASN SER ARG ILE VAL MET GLN ALA VAL SEQRES 36 A 1225 PHE ALA ARG GLU TYR ARG THR PRO GLU ARG ILE PHE LYS SEQRES 37 A 1225 SER LEU LYS ALA PRO ILE LYS LEU VAL GLU ARG GLN GLN SEQRES 38 A 1225 SER ASP ARG ARG GLN ARG ALA ILE SER GLY LEU ASP ASN SEQRES 39 A 1225 ASP ARG LEU PHE LEU SER PHE MET PRO TYR THR ILE GLY SEQRES 40 A 1225 LYS GLN ILE TYR ASP LEU ASN ASP ASN ALA ALA GLN GLY SEQRES 41 A 1225 LYS GLN ALA GLY ASN ALA PHE ASP ILE GLY GLU MET LEU SEQRES 42 A 1225 TYR TRP THR SER GLN ARG ASN VAL LEU LEU SER SER ILE SEQRES 43 A 1225 ASP VAL ALA GLY MET ASP ALA SER VAL THR THR ASN THR SEQRES 44 A 1225 LYS ASP ILE TYR ASN THR PHE VAL LEU ASP VAL ALA SER SEQRES 45 A 1225 LYS CYS THR VAL PRO ARG PHE GLY PRO TYR TYR ALA LYS SEQRES 46 A 1225 ASN MET GLU VAL PHE GLU VAL GLY LYS ARG GLN SER GLN SEQRES 47 A 1225 VAL LYS TYR VAL ASN ALA ALA TRP GLN ALA CYS ALA LEU SEQRES 48 A 1225 GLU ALA ALA ASN SER GLN THR SER THR SER TYR GLU SER SEQRES 49 A 1225 GLU ILE PHE GLY GLN VAL LYS ASN ALA GLU GLY THR TYR SEQRES 50 A 1225 PRO SER GLY ARG ALA ASP THR SER THR HIS HIS THR VAL SEQRES 51 A 1225 LEU LEU GLN GLY LEU VAL ARG GLY ASN GLU LEU LYS ARG SEQRES 52 A 1225 ALA SER ASP GLY LYS ASN SER CYS LEU THR THR ILE LYS SEQRES 53 A 1225 ILE LEU GLY ASP ASP ILE MET GLU ILE PHE GLN GLY ASN SEQRES 54 A 1225 GLU ASN ASP THR HIS ASP HIS ALA VAL SER ASN ALA SER SEQRES 55 A 1225 ILE LEU ASN GLU SER GLY PHE ALA THR THR ALA GLU LEU SEQRES 56 A 1225 SER GLN ASN SER ILE VAL LEU LEU GLN GLN LEU VAL VAL SEQRES 57 A 1225 ASN GLY THR PHE TRP GLY PHE ALA ASP ARG ILE SER LEU SEQRES 58 A 1225 TRP THR ARG GLU ASP THR LYS ASP ILE GLY ARG LEU ASN SEQRES 59 A 1225 LEU ALA MET MET GLU LEU ASN ALA LEU ILE ASP ASP LEU SEQRES 60 A 1225 LEU PHE ARG VAL ARG ARG PRO GLU GLY LEU LYS MET LEU SEQRES 61 A 1225 GLY PHE PHE CYS GLY ALA ILE CYS LEU ARG ARG PHE THR SEQRES 62 A 1225 LEU SER VAL ASP ASN LYS LEU TYR ASP SER THR TYR ASN SEQRES 63 A 1225 ASN LEU SER LYS TYR MET THR LEU VAL LYS TYR ASP LYS SEQRES 64 A 1225 ASN PRO ASP PHE ASP SER THR LEU MET SER LEU ILE LEU SEQRES 65 A 1225 PRO LEU ALA TRP LEU PHE MET PRO ARG GLY GLY GLU TYR SEQRES 66 A 1225 PRO ALA TYR PRO PHE GLU ARG ARG ASP GLY THR PHE THR SEQRES 67 A 1225 GLU ASP GLU SER MET PHE THR ALA ARG GLY ALA TYR LYS SEQRES 68 A 1225 ARG ARG LEU LEU TYR ASP VAL SER ASN ILE ARG GLU MET SEQRES 69 A 1225 ILE GLN GLN ASN SER MET VAL LEU ASP ASP ASP LEU LEU SEQRES 70 A 1225 HIS GLU TYR GLY PHE THR GLY ALA LEU LEU LEU ILE ASP SEQRES 71 A 1225 LEU ASN ILE LEU ASP LEU ILE ASP GLU VAL LYS LYS GLU SEQRES 72 A 1225 ASP ILE SER PRO VAL LYS VAL ASN GLU LEU ALA THR SER SEQRES 73 A 1225 LEU GLU GLN LEU GLY LYS LEU GLY GLU ARG GLU LYS SER SEQRES 74 A 1225 ARG ARG ALA ALA SER ASP LEU LYS ILE ARG GLY HIS ALA SEQRES 75 A 1225 LEU SER ASN ASP ILE VAL TYR GLY TYR GLY LEU GLN GLU SEQRES 76 A 1225 LYS ILE GLN LYS SER ALA MET ALA THR LYS GLU THR THR SEQRES 77 A 1225 VAL GLN SER LYS ARG VAL SER SER ARG LEU HIS GLU VAL SEQRES 78 A 1225 ILE VAL ALA LYS THR ARG ASP TYR LYS ILE PRO THR MET SEQRES 79 A 1225 PRO ALA ASP ALA LEU HIS LEU TYR GLU PHE GLU VAL GLU SEQRES 80 A 1225 ASP VAL THR VAL ASP LEU LEU PRO HIS ALA LYS HIS THR SEQRES 81 A 1225 SER TYR SER ASN LEU ALA TYR ASN MET SER PHE GLY SER SEQRES 82 A 1225 ASP GLY TRP PHE ALA PHE ALA LEU LEU GLY GLY LEU ASP SEQRES 83 A 1225 ARG SER ALA ASN LEU LEU ARG LEU ASP VAL ALA SER ILE SEQRES 84 A 1225 ARG GLY ASN TYR HIS LYS PHE SER TYR ASP ASP PRO VAL SEQRES 85 A 1225 PHE LYS GLN GLY TYR LYS ILE TYR LYS SER ASP ALA THR SEQRES 86 A 1225 LEU LEU ASN ASP PHE PHE VAL ALA ILE SER ALA GLY PRO SEQRES 87 A 1225 LYS GLU GLN GLY ILE LEU LEU ARG ALA PHE ALA TYR TYR SEQRES 88 A 1225 SER LEU TYR GLY ASN VAL GLU TYR HIS TYR VAL LEU SER SEQRES 89 A 1225 PRO ARG GLN LEU PHE PHE LEU SER ASP ASN PRO VAL SER SEQRES 90 A 1225 ALA GLU ARG LEU VAL ARG ILE PRO PRO SER TYR TYR VAL SEQRES 91 A 1225 SER THR GLN CYS ARG ALA LEU TYR ASN ILE PHE SER TYR SEQRES 92 A 1225 LEU HIS ILE LEU ARG SER ILE THR SER ASN GLN GLY LYS SEQRES 93 A 1225 ARG LEU GLY MET VAL LEU HIS PRO GLY LEU ILE ALA TYR SEQRES 94 A 1225 VAL ARG GLY THR SER GLN GLY ALA ILE LEU PRO GLU ALA SEQRES 95 A 1225 ASP ASN VAL SEQRES 1 B 561 MET PHE ALA ILE ASP PRO LEU LYS HIS SER LYS LEU TYR SEQRES 2 B 561 GLU GLU TYR GLY LEU TYR LEU ARG PRO HIS GLN ILE ASN SEQRES 3 B 561 GLN GLU ILE LYS PRO THR THR ILE LYS LYS LYS GLU LEU SEQRES 4 B 561 ALA PRO THR ILE ARG SER ILE LYS TYR ALA SER LEU ILE SEQRES 5 B 561 HIS SER MET LEU ALA LYS HIS ALA ALA ARG HIS ASN GLY SEQRES 6 B 561 THR LEU ILE ASN PRO ARG MET TYR ALA ASP MET ILE THR SEQRES 7 B 561 LEU GLY ASN THR LYS VAL THR VAL THR LYS GLY THR PRO SEQRES 8 B 561 LYS ALA GLN ILE ASP THR LEU LYS MET ASN GLY LEU THR SEQRES 9 B 561 VAL VAL SER LYS SER ARG ARG ASN ASN LYS LYS LYS PRO SEQRES 10 B 561 VAL SER ASP THR THR ALA THR ILE ASP GLU ASN THR ASP SEQRES 11 B 561 ASP ILE VAL THR TYR LYS ALA LEU THR GLU MET SER THR SEQRES 12 B 561 LEU ILE GLU SER PHE ARG LEU PRO SER GLY LEU ALA LEU SEQRES 13 B 561 ILE ILE PHE ASP ASP GLU LYS TYR GLN SER LEU ILE PRO SEQRES 14 B 561 ASN TYR ILE ASN GLN LEU ILE ALA TYR THR GLN PRO HIS SEQRES 15 B 561 ILE ILE PRO THR TRP GLN GLY ILE ALA ASP PHE SER ASP SEQRES 16 B 561 THR TYR LEU ARG SER TYR PHE LYS ARG PRO PHE GLU LEU SEQRES 17 B 561 THR ALA SER ASN LEU ALA ALA PRO GLN LYS TYR ASN LEU SEQRES 18 B 561 SER PRO MET THR ARG SER ILE PHE ASN ASN THR GLY ARG SEQRES 19 B 561 GLU ASP ALA VAL ILE ARG LYS LEU TYR GLY TYR GLY GLU SEQRES 20 B 561 TYR VAL PHE ILE ARG TYR GLU GLY CYS LEU ILE THR TRP SEQRES 21 B 561 THR GLY ILE TYR GLY GLU VAL THR MET MET VAL ASN LEU SEQRES 22 B 561 SER LYS ARG ASP LEU GLY LEU ASP VAL GLY ASP ASP TYR SEQRES 23 B 561 LEU LYS GLU TYR LYS LYS LEU LEU PHE TYR GLY VAL ILE SEQRES 24 B 561 THR ASP ALA ILE PRO SER GLY ILE SER ALA ARG SER THR SEQRES 25 B 561 ILE MET LYS ILE SER PRO HIS LYS MET MET ASN PRO SER SEQRES 26 B 561 GLY GLY ALA LEU ALA VAL LEU SER LYS PHE LEU GLU ALA SEQRES 27 B 561 VAL VAL SER THR ASN VAL ILE ASN ALA THR LEU VAL VAL SEQRES 28 B 561 TYR ALA GLU LYS GLY ALA GLY LYS THR SER PHE LEU SER SEQRES 29 B 561 THR TYR ALA GLU GLN LEU SER LEU ALA SER GLY GLN VAL SEQRES 30 B 561 VAL GLY HIS LEU SER SER ASP ALA TYR GLY ARG TRP LEU SEQRES 31 B 561 ALA LYS ASN LYS ASP VAL GLU GLU PRO SER PHE ALA TYR SEQRES 32 B 561 ASP TYR VAL LEU SER LEU ASP THR ASP ASP ASN GLU SER SEQRES 33 B 561 TYR TYR GLU GLN LYS ALA SER GLU LEU LEU ILE SER HIS SEQRES 34 B 561 GLY ILE SER GLU VAL ALA GLN TYR GLU LEU LEU SER VAL SEQRES 35 B 561 ARG LYS LYS ILE LYS MET MET ASP GLU MET ASN GLU VAL SEQRES 36 B 561 LEU ILE ALA GLN LEU GLU ASN ALA ASP THR HIS SER GLU SEQRES 37 B 561 ARG ASN PHE TYR TYR MET VAL SER THR GLY LYS THR THR SEQRES 38 B 561 PRO ARG THR LEU ILE VAL GLU GLY HIS PHE ASN ALA GLN SEQRES 39 B 561 ASP ALA THR ILE ALA ARG THR ASP THR THR VAL LEU LEU SEQRES 40 B 561 ARG THR ILE ASN ASP THR THR GLN ALA MET ARG ASP ARG SEQRES 41 B 561 GLN ARG GLY GLY VAL VAL GLN LEU PHE LEU ARG ASP THR SEQRES 42 B 561 TYR TYR ARG LEU LEU PRO ALA LEU HIS THR THR VAL TYR SEQRES 43 B 561 PRO PHE GLU MET LEU GLU SER ILE ARG ARG TRP LYS TRP SEQRES 44 B 561 VAL HIS SEQRES 1 M 2 A GTP SEQRES 1 N 19 GTA G U A A U U U U U U U U SEQRES 2 N 19 U U U U U U SEQRES 1 T 19 A A A A A A A A A A A A A SEQRES 2 T 19 A U U A C U HET GTP M 2 32 HET GTA N 1 51 HET MG A1301 1 HET MG A1302 1 HET MG A1303 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM GTA P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN GTA 7-METHYL-GPPPA FORMUL 3 GTP C10 H16 N5 O14 P3 FORMUL 4 GTA C21 H30 N10 O17 P3 1+ FORMUL 6 MG 3(MG 2+) HELIX 1 AA1 GLU A 6 THR A 10 5 5 HELIX 2 AA2 ILE A 11 ARG A 16 1 6 HELIX 3 AA3 GLU A 21 ASP A 36 1 16 HELIX 4 AA4 ASP A 36 PHE A 45 1 10 HELIX 5 AA5 PRO A 72 ASN A 77 1 6 HELIX 6 AA6 ASP A 82 TYR A 86 5 5 HELIX 7 AA7 ARG A 108 LEU A 112 5 5 HELIX 8 AA8 THR A 120 VAL A 135 1 16 HELIX 9 AA9 ASP A 144 GLN A 161 1 18 HELIX 10 AB1 TYR A 165 HIS A 176 1 12 HELIX 11 AB2 ILE A 202 SER A 219 1 18 HELIX 12 AB3 THR A 223 ALA A 238 1 16 HELIX 13 AB4 SER A 241 LYS A 250 1 10 HELIX 14 AB5 TRP A 256 GLY A 265 1 10 HELIX 15 AB6 SER A 294 LEU A 307 1 14 HELIX 16 AB7 TYR A 308 LEU A 321 1 14 HELIX 17 AB8 THR A 324 ASN A 340 1 17 HELIX 18 AB9 SER A 352 PHE A 358 1 7 HELIX 19 AC1 GLY A 388 SER A 398 1 11 HELIX 20 AC2 PHE A 400 GLY A 410 1 11 HELIX 21 AC3 HIS A 412 LEU A 421 1 10 HELIX 22 AC4 THR A 431 GLY A 439 1 9 HELIX 23 AC5 GLY A 440 SER A 446 5 7 HELIX 24 AC6 SER A 448 PHE A 456 1 9 HELIX 25 AC7 ALA A 457 TYR A 460 5 4 HELIX 26 AC8 PRO A 463 LYS A 468 1 6 HELIX 27 AC9 ASP A 495 SER A 500 1 6 HELIX 28 AD1 SER A 500 GLN A 509 1 10 HELIX 29 AD2 ILE A 510 LEU A 513 5 4 HELIX 30 AD3 ASN A 525 ASP A 528 5 4 HELIX 31 AD4 ILE A 529 THR A 536 1 8 HELIX 32 AD5 GLY A 550 VAL A 555 1 6 HELIX 33 AD6 LYS A 560 LYS A 573 1 14 HELIX 34 AD7 ASN A 603 ASN A 615 1 13 HELIX 35 AD8 ASP A 643 SER A 665 1 23 HELIX 36 AD9 ASN A 689 GLU A 706 1 18 HELIX 37 AE1 PHE A 735 ILE A 739 5 5 HELIX 38 AE2 LEU A 755 ASP A 766 1 12 HELIX 39 AE3 LEU A 767 VAL A 771 5 5 HELIX 40 AE4 GLU A 775 CYS A 788 1 14 HELIX 41 AE5 LEU A 800 SER A 809 1 10 HELIX 42 AE6 PRO A 833 MET A 839 5 7 HELIX 43 AE7 GLY A 868 LYS A 871 5 4 HELIX 44 AE8 ARG A 872 VAL A 878 1 7 HELIX 45 AE9 ASN A 880 ASN A 888 1 9 HELIX 46 AF1 ASP A 893 TYR A 900 1 8 HELIX 47 AF2 GLY A 901 ASN A 912 1 12 HELIX 48 AF3 ASN A 912 GLU A 923 1 12 HELIX 49 AF4 SER A 926 GLN A 939 1 14 HELIX 50 AF5 ARG A 946 ILE A 958 1 13 HELIX 51 AF6 TYR A 971 ALA A 983 1 13 HELIX 52 AF7 THR A 987 THR A 1006 1 20 HELIX 53 AF8 MET A 1014 HIS A 1020 5 7 HELIX 54 AF9 LEU A 1034 LYS A 1038 5 5 HELIX 55 AG1 SER A 1053 GLY A 1063 1 11 HELIX 56 AG2 ASP A 1066 SER A 1078 1 13 HELIX 57 AG3 ASP A 1090 ASP A 1103 1 14 HELIX 58 AG4 LEU A 1106 ILE A 1114 1 9 HELIX 59 AG5 GLY A 1117 SER A 1132 1 16 HELIX 60 AG6 ASN A 1154 GLU A 1159 5 6 HELIX 61 AG7 PRO A 1165 TYR A 1169 5 5 HELIX 62 AG8 GLN A 1173 SER A 1189 1 17 HELIX 63 AG9 ILE A 1190 ASN A 1193 5 4 HELIX 64 AH1 HIS A 1203 GLY A 1212 1 10 HELIX 65 AH2 HIS B 9 TYR B 16 1 8 HELIX 66 AH3 PRO B 41 ALA B 61 1 21 HELIX 67 AH4 ASN B 69 THR B 78 1 10 HELIX 68 AH5 TYR B 135 SER B 147 1 13 HELIX 69 AH6 ASP B 161 LEU B 167 1 7 HELIX 70 AH7 PRO B 169 ALA B 177 1 9 HELIX 71 AH8 ASP B 195 PHE B 202 1 8 HELIX 72 AH9 GLU B 235 TYR B 243 1 9 HELIX 73 AI1 GLU B 289 TYR B 296 1 8 HELIX 74 AI2 SER B 325 SER B 341 1 17 HELIX 75 AI3 GLY B 358 GLY B 375 1 18 HELIX 76 AI4 ASP B 384 LYS B 394 1 11 HELIX 77 AI5 ALA B 402 LEU B 409 1 8 HELIX 78 AI6 SER B 416 HIS B 429 1 14 HELIX 79 AI7 GLU B 433 LEU B 439 1 7 HELIX 80 AI8 SER B 441 ALA B 458 1 18 HELIX 81 AI9 SER B 467 THR B 477 1 11 HELIX 82 AJ1 PHE B 491 THR B 497 5 7 HELIX 83 AJ2 ASP B 512 ASP B 519 1 8 HELIX 84 AJ3 GLY B 523 ARG B 536 1 14 HELIX 85 AJ4 TYR B 546 TRP B 557 1 12 SHEET 1 AA1 2 ASP A 54 GLU A 58 0 SHEET 2 AA1 2 GLN A 64 THR A 68 -1 O LEU A 65 N GLY A 57 SHEET 1 AA2 2 PHE A 183 SER A 186 0 SHEET 2 AA2 2 LYS A 191 PHE A 194 -1 O ILE A 193 N TYR A 184 SHEET 1 AA3 2 ARG A 266 TRP A 272 0 SHEET 2 AA3 2 VAL A 278 THR A 285 -1 O GLY A 280 N VAL A 271 SHEET 1 AA4 4 LYS A 382 LYS A 384 0 SHEET 2 AA4 4 ALA A 370 SER A 374 -1 N LEU A 372 O LYS A 382 SHEET 3 AA4 4 LYS A 585 GLU A 591 -1 O PHE A 590 N SER A 374 SHEET 4 AA4 4 GLN A 598 VAL A 602 -1 O GLN A 598 N VAL A 589 SHEET 1 AA5 2 LYS A 475 VAL A 477 0 SHEET 2 AA5 2 ILE A 489 GLY A 491 -1 O ILE A 489 N VAL A 477 SHEET 1 AA6 4 LEU A 672 LEU A 678 0 SHEET 2 AA6 4 ASP A 681 GLN A 687 -1 O ILE A 685 N THR A 673 SHEET 3 AA6 4 VAL A 541 SER A 544 -1 N LEU A 542 O PHE A 686 SHEET 4 AA6 4 LEU A 715 SER A 716 -1 O SER A 716 N LEU A 543 SHEET 1 AA7 2 ASP A 547 VAL A 548 0 SHEET 2 AA7 2 THR A 711 THR A 712 -1 O THR A 712 N ASP A 547 SHEET 1 AA8 2 SER A 621 SER A 624 0 SHEET 2 AA8 2 GLY A 628 LYS A 631 -1 O GLY A 628 N SER A 624 SHEET 1 AA9 3 ILE A 720 VAL A 721 0 SHEET 2 AA9 3 LEU A 726 VAL A 727 -1 O VAL A 727 N ILE A 720 SHEET 3 AA9 3 PHE A 732 TRP A 733 -1 O TRP A 733 N LEU A 726 SHEET 1 AB1 3 ARG A 791 ASP A 797 0 SHEET 2 AB1 3 SER A 825 ILE A 831 -1 O MET A 828 N LEU A 794 SHEET 3 AB1 3 THR A 813 LYS A 816 -1 N VAL A 815 O SER A 829 SHEET 1 AB2 3 TYR A1022 THR A1030 0 SHEET 2 AB2 3 LYS A1196 LEU A1202 -1 O ARG A1197 N GLU A1027 SHEET 3 AB2 3 VAL A1162 ARG A1163 1 N ARG A1163 O LEU A1198 SHEET 1 AB3 2 ILE B 157 PHE B 159 0 SHEET 2 AB3 2 HIS B 182 ILE B 184 1 O ILE B 184 N ILE B 158 SHEET 1 AB4 2 ARG B 204 LEU B 208 0 SHEET 2 AB4 2 ARG B 226 ASN B 230 1 O PHE B 229 N LEU B 208 SHEET 1 AB5 4 GLY B 297 ILE B 299 0 SHEET 2 AB5 4 GLU B 266 VAL B 271 -1 N MET B 270 O VAL B 298 SHEET 3 AB5 4 GLY B 255 THR B 261 -1 N TRP B 260 O VAL B 267 SHEET 4 AB5 4 ILE B 313 HIS B 319 -1 O MET B 314 N THR B 259 SHEET 1 AB6 5 VAL B 378 LEU B 381 0 SHEET 2 AB6 5 THR B 484 GLY B 489 1 O THR B 484 N GLY B 379 SHEET 3 AB6 5 ALA B 347 TYR B 352 1 N VAL B 351 O GLY B 489 SHEET 4 AB6 5 THR B 504 LEU B 507 1 O LEU B 507 N TYR B 352 SHEET 5 AB6 5 THR B 543 VAL B 545 1 O THR B 543 N LEU B 506 LINK O3B GTA N 1 P G N 2 1555 1555 1.56 LINK O VAL A 548 MG MG A1302 1555 1555 2.21 LINK OD1 ASP A 680 MG MG A1301 1555 1555 2.51 LINK OD2 ASP A 680 MG MG A1301 1555 1555 2.90 LINK OD2 ASP A 680 MG MG A1302 1555 1555 1.98 LINK OD1 ASP A 681 MG MG A1303 1555 1555 2.70 LINK MG MG A1301 O1A GTP M 2 1555 1555 2.06 LINK MG MG A1302 O3A GTP M 2 1555 1555 2.62 CISPEP 1 ILE B 303 PRO B 304 0 1.88 SITE 1 AC1 3 ASP A 680 ASP A 681 GTP M 2 SITE 1 AC2 4 VAL A 548 GLY A 550 ASP A 680 GTP M 2 SITE 1 AC3 1 ASP A 681 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000