HEADER TOXIN 09-AUG-19 6TYN TITLE SALMONELLA TYPHI PLTB HOMOPENTAMER WITH NEU-5NAC-9OAC-ALPHA-2-3-GAL- TITLE 2 BETA-1-4-GLCNAC GLYCANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERTUSSIS LIKE TOXIN SUBUNIT B; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: SUBTILASE CYTOTOXIN SUBUNIT B, PLTB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 3 ORGANISM_TAXID: 90370; SOURCE 4 GENE: STY1891, T1107, ABP05_22510, AXU46_23480, E2E79_23180, SOURCE 5 E2E83_22990, E2F00_23020, E2F08_23180, E2F09_23155, E2F13_22745, SOURCE 6 PLTB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PLTB, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NGUYEN,S.K.MILANO,Y.A.YANG,J.SONG REVDAT 4 11-OCT-23 6TYN 1 HETSYN LINK REVDAT 3 29-JUL-20 6TYN 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 04-MAR-20 6TYN 1 JRNL REVDAT 1 12-FEB-20 6TYN 0 JRNL AUTH T.NGUYEN,S.LEE,Y.A.YANG,C.AHN,J.H.SIM,T.G.KEI,K.N.BARNARD, JRNL AUTH 2 H.YU,S.K.MILLANO,X.CHEN,C.R.PARRISH,J.SONG JRNL TITL THE ROLE OF 9-O-ACETYLATED GLYCAN RECEPTOR MOIETIES IN THE JRNL TITL 2 TYPHOID TOXIN BINDING AND INTOXICATION. JRNL REF PLOS PATHOG. V. 16 08336 2020 JRNL REFN ESSN 1553-7374 JRNL PMID 32084237 JRNL DOI 10.1371/JOURNAL.PPAT.1008336 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.16_3549: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4RHR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG-1500, 0.1M SODIUM ACETATE PH REMARK 280 4.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.33750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.72600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.87350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.72600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.33750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.87350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 104 O HOH A 301 1.90 REMARK 500 O7 5N6 I 3 O HOH E 301 1.93 REMARK 500 O HOH D 321 O HOH D 322 1.96 REMARK 500 OE1 GLU C 41 O HOH C 301 1.99 REMARK 500 OD1 ASP B 28 O HOH B 201 2.01 REMARK 500 O HOH C 301 O HOH C 305 2.01 REMARK 500 O HOH B 216 O HOH B 219 2.05 REMARK 500 OE1 GLN C 104 O HOH C 302 2.06 REMARK 500 O ILE E 39 O HOH E 302 2.07 REMARK 500 OD2 ASP A 28 O HOH A 302 2.11 REMARK 500 OG SER C 63 O HOH C 303 2.12 REMARK 500 O SER A 129 O HOH A 303 2.13 REMARK 500 OE1 GLN C 75 OH TYR C 110 2.13 REMARK 500 O THR C 49 O HOH C 304 2.14 REMARK 500 N VAL A 72 O HOH A 304 2.14 REMARK 500 OD2 ASP D 48 O HOH D 301 2.16 REMARK 500 OG1 THR E 30 O HOH E 303 2.16 REMARK 500 C4 NAG H 1 C1 GAL H 2 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 66 154.44 -40.40 REMARK 500 SER A 76 168.54 72.07 REMARK 500 PHE A 117 -95.89 -125.91 REMARK 500 SER B 76 171.49 79.78 REMARK 500 PHE B 117 -90.41 -130.22 REMARK 500 ASP C 48 66.62 29.29 REMARK 500 THR C 49 -16.40 90.10 REMARK 500 SER C 76 166.41 80.25 REMARK 500 PHE C 117 -95.34 -114.35 REMARK 500 SER C 129 -158.93 -111.29 REMARK 500 SER D 76 163.61 65.37 REMARK 500 PHE D 117 -113.01 -124.98 REMARK 500 THR D 131 -73.98 -43.16 REMARK 500 ASN E 29 4.19 -68.75 REMARK 500 SER E 76 162.16 75.23 REMARK 500 ASN E 106 43.73 70.60 REMARK 500 PHE E 117 -100.51 -107.84 REMARK 500 PHE E 134 72.27 -103.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL E 72 SER E 73 -148.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 6TYN A 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 6TYN B 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 6TYN C 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 6TYN D 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 6TYN E 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 SEQRES 1 A 114 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 A 114 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 A 114 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 A 114 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 A 114 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 A 114 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 A 114 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 A 114 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 A 114 CYS SER ALA THR GLN CYS PHE GLY PRO LYS SEQRES 1 B 114 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 B 114 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 B 114 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 B 114 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 B 114 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 B 114 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 B 114 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 B 114 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 B 114 CYS SER ALA THR GLN CYS PHE GLY PRO LYS SEQRES 1 C 114 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 C 114 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 C 114 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 C 114 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 C 114 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 C 114 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 C 114 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 C 114 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 C 114 CYS SER ALA THR GLN CYS PHE GLY PRO LYS SEQRES 1 D 114 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 D 114 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 D 114 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 D 114 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 D 114 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 D 114 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 D 114 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 D 114 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 D 114 CYS SER ALA THR GLN CYS PHE GLY PRO LYS SEQRES 1 E 114 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 E 114 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 E 114 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 E 114 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 E 114 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 E 114 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 E 114 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 E 114 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 E 114 CYS SER ALA THR GLN CYS PHE GLY PRO LYS HET NAG F 1 15 HET GAL F 2 11 HET 5N6 F 3 23 HET NAG G 1 15 HET GAL G 2 11 HET 5N6 G 3 23 HET NAG H 1 15 HET GAL H 2 11 HET 5N6 H 3 23 HET NAG I 1 15 HET GAL I 2 11 HET 5N6 I 3 23 HET NAG J 1 15 HET GAL J 2 11 HET 5N6 J 3 23 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM 5N6 9-O-ACETYL-5-ACETAMIDO-3,5-DIDEOXY-D-GLYCERO-ALPHA-D- HETNAM 2 5N6 GALACTO-NON-2-ULOPYRANOSONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN 5N6 (2~{R},4~{S},5~{R},6~{R})-5-ACETAMIDO-6-[(1~{R},2~{R})- HETSYN 2 5N6 3-ACETYLOXY-1,2-BIS(OXIDANYL)PROPYL]-2,4- HETSYN 3 5N6 BIS(OXIDANYL)OXANE-2-CA RBOXYLIC ACID; 9-O-ACETYL-5- HETSYN 4 5N6 ACETAMIDO-3,5-DIDEOXY-D-GLYCERO-ALPHA-D-GALACTO-NON-2- HETSYN 5 5N6 ULOSONIC ACID; 9-O-ACETYL-5-ACETAMIDO-3,5-DIDEOXY-D- HETSYN 6 5N6 GLYCERO-D-GALACTO-NON-2-ULOSONIC ACID; 9-O-ACETYL-5- HETSYN 7 5N6 ACETAMIDO-3,5-DIDEOXY-D-GLYCERO-GALACTO-NON-2-ULOSONIC HETSYN 8 5N6 ACID FORMUL 6 NAG 5(C8 H15 N O6) FORMUL 6 GAL 5(C6 H12 O6) FORMUL 6 5N6 5(C13 H21 N O10) FORMUL 11 HOH *110(H2 O) HELIX 1 AA1 TRP A 78 PRO A 80 5 3 HELIX 2 AA2 SER A 81 GLY A 96 1 16 HELIX 3 AA3 TYR A 110 PHE A 117 1 8 HELIX 4 AA4 TRP B 78 PRO B 80 5 3 HELIX 5 AA5 SER B 81 GLY B 96 1 16 HELIX 6 AA6 TYR B 110 PHE B 117 1 8 HELIX 7 AA7 TRP C 78 PRO C 80 5 3 HELIX 8 AA8 SER C 81 GLY C 96 1 16 HELIX 9 AA9 TYR C 110 PHE C 117 1 8 HELIX 10 AB1 TRP D 78 PRO D 80 5 3 HELIX 11 AB2 SER D 81 GLY D 96 1 16 HELIX 12 AB3 TYR D 110 PHE D 117 1 8 HELIX 13 AB4 TRP E 78 PRO E 80 5 3 HELIX 14 AB5 SER E 81 GLY E 96 1 16 HELIX 15 AB6 TYR E 110 PHE E 117 1 8 SHEET 1 AA1 7 ALA A 32 ILE A 47 0 SHEET 2 AA1 7 ALA B 121 SER B 127 -1 O SER B 127 N LEU A 42 SHEET 3 AA1 7 VAL B 67 VAL B 72 1 N CYS B 70 O LEU B 122 SHEET 4 AA1 7 SER B 50 LYS B 59 -1 N PHE B 53 O ALA B 71 SHEET 5 AA1 7 ALA B 32 ILE B 47 -1 N SER B 40 O LYS B 56 SHEET 6 AA1 7 VAL B 99 GLN B 104 -1 O VAL B 103 N ALA B 32 SHEET 7 AA1 7 ALA B 121 SER B 127 -1 O VAL B 123 N HIS B 102 SHEET 1 AA2 7 ALA C 32 ILE C 47 0 SHEET 2 AA2 7 ALA A 121 SER A 127 -1 N LEU A 125 O VAL C 44 SHEET 3 AA2 7 VAL A 67 VAL A 72 1 N CYS A 70 O LEU A 122 SHEET 4 AA2 7 SER A 50 LYS A 59 -1 N THR A 57 O VAL A 67 SHEET 5 AA2 7 ALA A 32 ILE A 47 -1 N VAL A 38 O VAL A 58 SHEET 6 AA2 7 VAL A 99 GLN A 104 -1 O VAL A 99 N GLU A 37 SHEET 7 AA2 7 ALA A 121 SER A 127 -1 O VAL A 123 N HIS A 102 SHEET 1 AA3 7 ALA D 32 ILE D 47 0 SHEET 2 AA3 7 ALA C 121 SER C 127 -1 N SER C 127 O LEU D 42 SHEET 3 AA3 7 VAL C 67 VAL C 72 1 N CYS C 70 O LEU C 122 SHEET 4 AA3 7 SER C 50 LYS C 59 -1 N ILE C 55 O ALA C 69 SHEET 5 AA3 7 ALA C 32 ILE C 47 -1 N GLY C 45 O TYR C 52 SHEET 6 AA3 7 VAL C 99 GLN C 104 -1 O VAL C 99 N GLU C 37 SHEET 7 AA3 7 ALA C 121 SER C 127 -1 O SER C 126 N ARG C 100 SHEET 1 AA4 7 ALA E 32 ILE E 47 0 SHEET 2 AA4 7 ALA D 121 SER D 127 -1 N SER D 127 O LEU E 42 SHEET 3 AA4 7 VAL D 67 VAL D 72 1 N CYS D 70 O LEU D 122 SHEET 4 AA4 7 SER D 50 LYS D 59 -1 N THR D 57 O VAL D 67 SHEET 5 AA4 7 ALA D 32 ILE D 47 -1 N ILE D 47 O SER D 50 SHEET 6 AA4 7 SER D 98 GLN D 104 -1 O VAL D 99 N GLU D 37 SHEET 7 AA4 7 ALA D 121 SER D 127 -1 O ALA D 121 N GLN D 104 SHEET 1 AA5 7 ALA E 121 SER E 127 0 SHEET 2 AA5 7 VAL E 67 VAL E 72 1 N CYS E 70 O LEU E 122 SHEET 3 AA5 7 SER E 50 LYS E 59 -1 N THR E 57 O VAL E 67 SHEET 4 AA5 7 ALA E 32 ILE E 47 -1 N SER E 40 O LYS E 56 SHEET 5 AA5 7 VAL E 99 GLN E 104 -1 O VAL E 103 N ALA E 32 SHEET 6 AA5 7 ALA E 121 SER E 127 -1 O SER E 126 N ARG E 100 SHEET 7 AA5 7 ALA B 32 ILE B 47 -1 N VAL B 44 O LEU E 125 SSBOND 1 CYS A 54 CYS A 70 1555 1555 2.06 SSBOND 2 CYS A 128 CYS A 133 1555 1555 2.11 SSBOND 3 CYS B 54 CYS B 70 1555 1555 2.07 SSBOND 4 CYS B 128 CYS B 133 1555 1555 2.03 SSBOND 5 CYS C 54 CYS C 70 1555 1555 2.04 SSBOND 6 CYS C 128 CYS C 133 1555 1555 2.07 SSBOND 7 CYS D 54 CYS D 70 1555 1555 2.06 SSBOND 8 CYS D 128 CYS D 133 1555 1555 2.06 SSBOND 9 CYS E 54 CYS E 70 1555 1555 2.07 SSBOND 10 CYS E 128 CYS E 133 1555 1555 2.03 LINK CG2 VAL E 58 O3 NAG F 1 1555 4555 1.38 LINK O4 NAG F 1 C1 GAL F 2 1555 1555 1.40 LINK O3 GAL F 2 C2 5N6 F 3 1555 1555 1.50 LINK O4 NAG G 1 C1 GAL G 2 1555 1555 1.36 LINK O3 GAL G 2 C2 5N6 G 3 1555 1555 1.48 LINK O4 NAG H 1 C1 GAL H 2 1555 1555 1.38 LINK O3 GAL H 2 C2 5N6 H 3 1555 1555 1.50 LINK O4 NAG I 1 C1 GAL I 2 1555 1555 1.38 LINK O3 GAL I 2 C2 5N6 I 3 1555 1555 1.50 LINK O4 NAG J 1 C1 GAL J 2 1555 1555 1.37 LINK O3 GAL J 2 C2 5N6 J 3 1555 1555 1.48 CRYST1 68.675 97.747 101.452 90.00 90.00 90.00 P 21 21 21 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009857 0.00000