HEADER DNA BINDING PROTEIN 09-AUG-19 6TYT TITLE STRUCTURE OF KU80 VON WILLEBRAND DOMAIN S229A MUTANT COMPLEXED WITH TITLE 2 APLF AND XLF KU BINDING MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KU80 VON WILLEBRAND DOMAIN; COMPND 5 EC: 3.6.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ALA-LYS-GLY-LEU-PHE-MET; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: XLF KU BINDING MOTIF; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ARG-LYS-ARG-ILE-LEU-PRO-THR-TRP-MET-LEU-ALA; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: APLF KU BINDING MOTIF; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: XELAEV_18044412MG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 11 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 12 ORGANISM_TAXID: 8355; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS KU80 VON WILLEBRAND FACTOR A DOMAIN, FLUORINE-19 NMR, KU BINDING KEYWDS 2 MOTIF, CONDITIONAL BINDING SITE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.MIN,L.C.PEDERSEN REVDAT 2 11-OCT-23 6TYT 1 REMARK REVDAT 1 27-NOV-19 6TYT 0 JRNL AUTH K.KIM,J.MIN,T.W.KIRBY,S.A.GABEL,L.C.PEDERSEN,R.E.LONDON JRNL TITL LIGAND BINDING CHARACTERISTICS OF THE KU80 VON WILLEBRAND JRNL TITL 2 DOMAIN. JRNL REF DNA REPAIR (AMST.) V. 85 02739 2019 JRNL REFN ISSN 1568-7856 JRNL PMID 31733588 JRNL DOI 10.1016/J.DNAREP.2019.102739 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.363 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 9861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.949 REMARK 3 FREE R VALUE TEST SET COUNT : 488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8800 - 5.1731 0.99 1048 53 0.2017 0.2504 REMARK 3 2 5.1731 - 4.1081 0.98 966 51 0.1703 0.2329 REMARK 3 3 4.1081 - 3.5894 1.00 976 54 0.2322 0.2198 REMARK 3 4 3.5894 - 3.2615 1.00 969 50 0.2494 0.2307 REMARK 3 5 3.2615 - 3.0279 1.00 956 53 0.2700 0.3322 REMARK 3 6 3.0279 - 2.8494 1.00 974 47 0.3192 0.3459 REMARK 3 7 2.8494 - 2.7068 0.99 947 51 0.2940 0.3071 REMARK 3 8 2.7068 - 2.5890 0.93 899 42 0.2681 0.4405 REMARK 3 9 2.5890 - 2.4894 0.90 864 46 0.2879 0.3195 REMARK 3 10 2.4894 - 2.4035 0.82 774 41 0.3168 0.3426 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.361 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1665 REMARK 3 ANGLE : 0.378 2258 REMARK 3 CHIRALITY : 0.039 278 REMARK 3 PLANARITY : 0.001 286 REMARK 3 DIHEDRAL : 11.203 572 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4041 9.5109 -24.9958 REMARK 3 T TENSOR REMARK 3 T11: 0.5958 T22: 0.5844 REMARK 3 T33: 0.6599 T12: -0.1002 REMARK 3 T13: 0.0009 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 6.7846 L22: 0.3577 REMARK 3 L33: 6.5110 L12: -1.0326 REMARK 3 L13: 0.5269 L23: -0.9464 REMARK 3 S TENSOR REMARK 3 S11: -0.3185 S12: 0.6065 S13: 1.4292 REMARK 3 S21: -0.2151 S22: 0.1164 S23: 0.2482 REMARK 3 S31: -0.6159 S32: 0.0551 S33: 0.0974 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1026 8.7565 -24.6856 REMARK 3 T TENSOR REMARK 3 T11: 0.5660 T22: 0.7722 REMARK 3 T33: 0.6467 T12: -0.0181 REMARK 3 T13: -0.1622 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 6.2094 L22: 3.3276 REMARK 3 L33: 8.8974 L12: -1.1628 REMARK 3 L13: -3.4696 L23: 1.8788 REMARK 3 S TENSOR REMARK 3 S11: -0.1937 S12: 0.3825 S13: 0.5794 REMARK 3 S21: -0.3245 S22: 0.0515 S23: 0.6512 REMARK 3 S31: -0.3887 S32: -1.2649 S33: 0.1964 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8609 -4.1856 -22.3625 REMARK 3 T TENSOR REMARK 3 T11: 0.6926 T22: 0.5229 REMARK 3 T33: 0.7758 T12: -0.2370 REMARK 3 T13: 0.0481 T23: -0.2223 REMARK 3 L TENSOR REMARK 3 L11: 1.8432 L22: 1.8218 REMARK 3 L33: 0.8271 L12: -0.5117 REMARK 3 L13: 0.7975 L23: -0.8013 REMARK 3 S TENSOR REMARK 3 S11: -0.5780 S12: -0.0746 S13: -0.7981 REMARK 3 S21: -0.6336 S22: 0.0234 S23: -0.0590 REMARK 3 S31: 0.7877 S32: -0.6212 S33: -0.0225 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2176 6.1771 -8.5618 REMARK 3 T TENSOR REMARK 3 T11: 0.5987 T22: 0.7812 REMARK 3 T33: 0.4738 T12: 0.0847 REMARK 3 T13: -0.0288 T23: -0.1622 REMARK 3 L TENSOR REMARK 3 L11: 9.1327 L22: 1.2229 REMARK 3 L33: 7.4220 L12: 0.4478 REMARK 3 L13: 0.0652 L23: -0.1533 REMARK 3 S TENSOR REMARK 3 S11: -0.2892 S12: -1.3253 S13: 0.7676 REMARK 3 S21: 0.4756 S22: 0.1641 S23: 0.8110 REMARK 3 S31: -0.2910 S32: -1.3073 S33: 0.1144 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2747 6.6474 -12.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.6608 T22: 0.6983 REMARK 3 T33: 0.6585 T12: -0.0997 REMARK 3 T13: 0.0539 T23: -0.1505 REMARK 3 L TENSOR REMARK 3 L11: 4.2547 L22: 3.5290 REMARK 3 L33: 8.9435 L12: 0.6397 REMARK 3 L13: 0.6650 L23: -1.1933 REMARK 3 S TENSOR REMARK 3 S11: -0.3452 S12: 0.3851 S13: 0.3763 REMARK 3 S21: 0.0290 S22: 0.4095 S23: 0.1894 REMARK 3 S31: -0.6202 S32: 0.3066 S33: -0.2173 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3430 4.2561 -11.1922 REMARK 3 T TENSOR REMARK 3 T11: 0.6019 T22: 0.6435 REMARK 3 T33: 0.6524 T12: -0.0483 REMARK 3 T13: -0.0425 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 6.2964 L22: 1.2835 REMARK 3 L33: 8.7144 L12: 1.6604 REMARK 3 L13: -2.5654 L23: -0.9132 REMARK 3 S TENSOR REMARK 3 S11: -0.5669 S12: -0.5077 S13: -0.4905 REMARK 3 S21: 0.0583 S22: -0.3728 S23: -0.1028 REMARK 3 S31: 0.0470 S32: 0.8258 S33: 0.8476 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 306 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4699 -4.6760 -20.3937 REMARK 3 T TENSOR REMARK 3 T11: 0.8317 T22: 0.8228 REMARK 3 T33: 0.7420 T12: 0.1683 REMARK 3 T13: 0.1396 T23: -0.3187 REMARK 3 L TENSOR REMARK 3 L11: 5.7329 L22: 5.7266 REMARK 3 L33: 4.2565 L12: 5.7301 REMARK 3 L13: -4.9395 L23: -4.9379 REMARK 3 S TENSOR REMARK 3 S11: -1.1997 S12: 1.9166 S13: -2.7190 REMARK 3 S21: -1.2820 S22: -0.0613 S23: 0.5897 REMARK 3 S31: 2.1876 S32: -0.2829 S33: 0.0876 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 182 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6162 8.7543 -9.4187 REMARK 3 T TENSOR REMARK 3 T11: 0.5853 T22: 1.0410 REMARK 3 T33: 0.8622 T12: 0.1052 REMARK 3 T13: -0.0552 T23: -0.1122 REMARK 3 L TENSOR REMARK 3 L11: 7.9171 L22: 1.9998 REMARK 3 L33: 3.8070 L12: 8.9876 REMARK 3 L13: 5.4913 L23: 6.2332 REMARK 3 S TENSOR REMARK 3 S11: -0.6283 S12: 1.1582 S13: 2.5627 REMARK 3 S21: 0.4376 S22: -0.3381 S23: 1.1270 REMARK 3 S31: -0.1944 S32: -1.9537 S33: 0.6930 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 188 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2593 -1.3117 -12.2191 REMARK 3 T TENSOR REMARK 3 T11: 0.6102 T22: 1.4309 REMARK 3 T33: 1.1373 T12: -0.1807 REMARK 3 T13: 0.1172 T23: -0.3062 REMARK 3 L TENSOR REMARK 3 L11: 8.5578 L22: 5.7788 REMARK 3 L33: 7.2758 L12: 2.8632 REMARK 3 L13: -5.2166 L23: 2.6968 REMARK 3 S TENSOR REMARK 3 S11: 0.5397 S12: -0.6293 S13: -1.6091 REMARK 3 S21: 0.2985 S22: -2.0166 S23: 1.7885 REMARK 3 S31: -0.1507 S32: -0.3297 S33: 1.5533 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6TYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES NAOH PH 7.5, 25 % (W/V) REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.08700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.08700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.82100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.70350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.82100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.70350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.08700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.82100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.70350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.08700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.82100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.70350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 188 REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 GLY A 191 REMARK 465 PRO A 192 REMARK 465 GLY A 193 REMARK 465 LYS A 194 REMARK 465 LYS A 237 REMARK 465 LYS A 238 REMARK 465 ILE A 239 REMARK 465 GLU A 240 REMARK 465 ARG A 241 REMARK 465 ARG A 242 REMARK 465 ARG B 294 REMARK 465 PRO B 295 REMARK 465 PRO B 296 REMARK 465 ALA B 297 REMARK 465 GLY B 298 REMARK 465 ALA B 299 REMARK 465 SER B 300 REMARK 465 LYS B 301 REMARK 465 PRO B 302 REMARK 465 LYS B 303 REMARK 465 LYS B 304 REMARK 465 LYS B 305 REMARK 465 LEU C 179 REMARK 465 ALA C 180 REMARK 465 GLU C 181 REMARK 465 GLU C 193 REMARK 465 HIS C 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 17 CG CD1 CD2 REMARK 470 SER A 20 OG REMARK 470 HIS A 21 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 23 CG OD1 ND2 REMARK 470 GLN A 24 CG CD OE1 NE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 34 CE NZ REMARK 470 LYS A 35 CD CE NZ REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ASP A 71 CG OD1 OD2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 119 CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 128 NE CZ NH1 NH2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 SER A 167 OG REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 ASP A 198 CG OD1 OD2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 MET A 206 SD CE REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 ARG A 227 CD NE CZ NH1 NH2 REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 PHE A 236 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 182 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 183 CG CD CE NZ REMARK 470 ILE C 185 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 81.64 -151.58 REMARK 500 SER A 138 30.13 -95.27 REMARK 500 ASP A 215 21.22 -148.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TYW RELATED DB: PDB REMARK 900 6TYW CONTAINS THE SAME PROTEIN COMPLEXED WITH APLF REMARK 900 RELATED ID: 6TYX RELATED DB: PDB REMARK 900 6TYX CONTAINS THE SAME PROTEIN COMPLEXED WITH XLF REMARK 900 RELATED ID: 6TYZ RELATED DB: PDB REMARK 900 6TYZ CONTAINS THE WT-PROTEIN COMPLEXED WITH APLF REMARK 900 RELATED ID: 6TYU RELATED DB: PDB REMARK 900 6TYU CONTAINS THE WT-PROTEIN COMPLEXED WITH MRI REMARK 900 RELATED ID: 6TYV RELATED DB: PDB REMARK 900 6TYV CONTAINS THE WT-PROTEIN COMPLEXED WITH WRN DBREF1 6TYT A 1 242 UNP A0A1L8EVE5_XENLA DBREF2 6TYT A A0A1L8EVE5 1 242 DBREF 6TYT B 294 311 PDB 6TYT 6TYT 294 311 DBREF 6TYT C 179 194 PDB 6TYT 6TYT 179 194 SEQADV 6TYT MET A -6 UNP A0A1L8EVE INITIATING METHIONINE SEQADV 6TYT HIS A -5 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYT HIS A -4 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYT HIS A -3 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYT HIS A -2 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYT HIS A -1 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYT HIS A 0 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYT A UNP A0A1L8EVE GLU 171 DELETION SEQADV 6TYT A UNP A0A1L8EVE GLU 172 DELETION SEQADV 6TYT A UNP A0A1L8EVE PHE 173 DELETION SEQADV 6TYT A UNP A0A1L8EVE GLY 174 DELETION SEQADV 6TYT A UNP A0A1L8EVE GLY 175 DELETION SEQADV 6TYT A UNP A0A1L8EVE SER 176 DELETION SEQADV 6TYT A UNP A0A1L8EVE SER 177 DELETION SEQADV 6TYT A UNP A0A1L8EVE ASN 178 DELETION SEQADV 6TYT A UNP A0A1L8EVE ASN 179 DELETION SEQADV 6TYT A UNP A0A1L8EVE ARG 180 DELETION SEQADV 6TYT A UNP A0A1L8EVE GLY 181 DELETION SEQADV 6TYT A UNP A0A1L8EVE ASN 182 DELETION SEQADV 6TYT A UNP A0A1L8EVE ALA 183 DELETION SEQADV 6TYT A UNP A0A1L8EVE GLY 184 DELETION SEQADV 6TYT A UNP A0A1L8EVE SER 185 DELETION SEQADV 6TYT A UNP A0A1L8EVE SER 186 DELETION SEQADV 6TYT A UNP A0A1L8EVE ASP 187 DELETION SEQADV 6TYT A UNP A0A1L8EVE ARG 188 DELETION SEQADV 6TYT SER A 190 UNP A0A1L8EVE CYS 190 ENGINEERED MUTATION SEQADV 6TYT ALA A 229 UNP A0A1L8EVE SER 229 ENGINEERED MUTATION SEQRES 1 A 231 MET HIS HIS HIS HIS HIS HIS MET ALA ARG ALA ALA LYS SEQRES 2 A 231 SER ALA VAL VAL LEU CYS MET ASP VAL GLY LEU ALA MET SEQRES 3 A 231 SER HIS SER ASN GLN GLY LYS GLU SER PRO PHE GLU GLN SEQRES 4 A 231 ALA LYS LYS VAL MET MET LEU PHE LEU GLN ARG GLN VAL SEQRES 5 A 231 PHE ALA GLU SER LYS ASP GLU ILE ALA VAL VAL LEU TYR SEQRES 6 A 231 GLY THR ASP THR THR ASP ASN ALA LEU ALA ARG GLU ASP SEQRES 7 A 231 GLN TYR GLU ASN ILE SER VAL HIS ARG HIS LEU MET LEU SEQRES 8 A 231 PRO ASP PHE ASP LEU LEU GLU GLN ILE GLU ASN VAL VAL SEQRES 9 A 231 GLU PRO GLY SER VAL GLN ALA ASP PHE LEU ASP ALA LEU SEQRES 10 A 231 ILE VAL SER MET ASP LEU LEU GLN LYS GLU THR LEU GLY SEQRES 11 A 231 LYS LYS TYR THR ARG LEU HIS ILE ALA VAL PHE SER ASP SEQRES 12 A 231 LEU SER SER PRO PHE SER VAL ASP GLN LEU GLU VAL ILE SEQRES 13 A 231 ILE ALA ASN LEU LYS LYS ALA GLU ILE THR LEU GLN PHE SEQRES 14 A 231 PHE LEU PRO PHE SER VAL ASP GLU GLY SER GLY PRO GLY SEQRES 15 A 231 LYS GLY LEU SER ASP GLN GLN LYS GLU GLY ILE GLU MET SEQRES 16 A 231 VAL ARG LYS ILE MET PHE SER LEU ASP GLY GLU GLU GLY SEQRES 17 A 231 LEU SER GLU VAL PHE THR PHE ARG ASP ALA LEU GLU ARG SEQRES 18 A 231 LEU SER ILE PHE LYS LYS ILE GLU ARG ARG SEQRES 1 B 18 ARG PRO PRO ALA GLY ALA SER LYS PRO LYS LYS LYS ALA SEQRES 2 B 18 LYS GLY LEU PHE MET SEQRES 1 C 16 LEU ALA GLU ARG LYS ARG ILE LEU PRO THR TRP MET LEU SEQRES 2 C 16 ALA GLU HIS FORMUL 4 HOH *4(H2 O) HELIX 1 AA1 GLY A 16 HIS A 21 5 6 HELIX 2 AA2 SER A 28 ALA A 47 1 20 HELIX 3 AA3 ASP A 86 VAL A 96 1 11 HELIX 4 AA4 ASP A 105 THR A 121 1 17 HELIX 5 AA5 GLN A 145 GLU A 157 1 13 HELIX 6 AA6 SER A 197 SER A 221 1 25 HELIX 7 AA7 PHE A 226 LEU A 233 1 8 HELIX 8 AA8 LYS B 307 MET B 311 5 5 HELIX 9 AA9 PRO C 187 ALA C 192 5 6 SHEET 1 AA1 6 ILE A 76 MET A 83 0 SHEET 2 AA1 6 GLU A 52 TYR A 58 -1 N LEU A 57 O SER A 77 SHEET 3 AA1 6 SER A 7 ASP A 14 1 N LEU A 11 O ALA A 54 SHEET 4 AA1 6 ARG A 128 PHE A 134 1 O ALA A 132 N CYS A 12 SHEET 5 AA1 6 ILE A 158 LEU A 164 1 O GLN A 161 N VAL A 133 SHEET 6 AA1 6 VAL A 223 THR A 225 1 O PHE A 224 N PHE A 162 CRYST1 43.642 79.407 146.174 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022914 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006841 0.00000