HEADER DNA BINDING PROTEIN 09-AUG-19 6TYU TITLE STRUCTURE OF KU80 VON WILLEBRAND DOMAIN COMPLEXED WITH MRI KU BINDING TITLE 2 MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KU80 VON WILLEBRAND DOMAIN; COMPND 5 EC: 3.6.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: LYS-THR-ARG-VAL-LEU-PRO-SER-TRP-LEU-THR-ALA; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: MRI KU BINDING MOTIF; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: XRCC5, XRCC5-A-PROV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS KU80 VON WILLEBRAND FACTOR A DOMAIN, FLUORINE-19 NMR, KU BINDING KEYWDS 2 MOTIF, CONDITIONAL BINDING SITE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.MIN,L.C.PEDERSEN REVDAT 2 11-OCT-23 6TYU 1 REMARK REVDAT 1 27-NOV-19 6TYU 0 JRNL AUTH K.KIM,J.MIN,T.W.KIRBY,S.A.GABEL,L.C.PEDERSEN,R.E.LONDON JRNL TITL LIGAND BINDING CHARACTERISTICS OF THE KU80 VON WILLEBRAND JRNL TITL 2 DOMAIN. JRNL REF DNA REPAIR (AMST.) V. 85 02739 2019 JRNL REFN ISSN 1568-7856 JRNL PMID 31733588 JRNL DOI 10.1016/J.DNAREP.2019.102739 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.335 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 43032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.001 REMARK 3 FREE R VALUE TEST SET COUNT : 2152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8030 - 3.6210 1.00 2959 159 0.1634 0.1835 REMARK 3 2 3.6210 - 2.8744 0.99 2830 146 0.1710 0.1974 REMARK 3 3 2.8744 - 2.5111 0.98 2753 147 0.1687 0.1661 REMARK 3 4 2.5111 - 2.2816 0.99 2752 143 0.1671 0.2082 REMARK 3 5 2.2816 - 2.1180 1.00 2766 145 0.1688 0.1756 REMARK 3 6 2.1180 - 1.9932 1.00 2748 148 0.1738 0.2014 REMARK 3 7 1.9932 - 1.8934 0.98 2720 141 0.1997 0.2242 REMARK 3 8 1.8934 - 1.8109 0.97 2658 142 0.2172 0.2859 REMARK 3 9 1.8109 - 1.7412 0.99 2721 142 0.2233 0.2462 REMARK 3 10 1.7412 - 1.6811 0.99 2723 143 0.2105 0.2662 REMARK 3 11 1.6811 - 1.6286 1.00 2750 147 0.2015 0.2633 REMARK 3 12 1.6286 - 1.5820 0.99 2711 141 0.2078 0.2060 REMARK 3 13 1.5820 - 1.5404 0.99 2684 141 0.2202 0.2462 REMARK 3 14 1.5404 - 1.5028 0.98 2711 143 0.2248 0.2394 REMARK 3 15 1.5028 - 1.4687 0.87 2394 124 0.2668 0.3108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.841 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1800 REMARK 3 ANGLE : 0.905 2452 REMARK 3 CHIRALITY : 0.071 290 REMARK 3 PLANARITY : 0.005 320 REMARK 3 DIHEDRAL : 12.844 660 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0753 6.8135 12.9064 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.1906 REMARK 3 T33: 0.1885 T12: 0.0104 REMARK 3 T13: 0.0317 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.6274 L22: 0.4308 REMARK 3 L33: 1.3631 L12: 0.1220 REMARK 3 L13: -0.1354 L23: 0.1822 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: 0.0873 S13: 0.0376 REMARK 3 S21: -0.4899 S22: 0.0060 S23: -0.0799 REMARK 3 S31: -0.0229 S32: -0.0559 S33: 0.0049 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5460 2.3883 5.3890 REMARK 3 T TENSOR REMARK 3 T11: 0.2992 T22: 0.2316 REMARK 3 T33: 0.2217 T12: 0.0001 REMARK 3 T13: 0.0901 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.4916 L22: 0.7801 REMARK 3 L33: 0.5052 L12: 0.1068 REMARK 3 L13: 0.0070 L23: 0.3962 REMARK 3 S TENSOR REMARK 3 S11: -0.1401 S12: 0.1683 S13: 0.0250 REMARK 3 S21: -0.4122 S22: 0.0074 S23: -0.0882 REMARK 3 S31: 0.0875 S32: -0.0831 S33: -0.1979 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7672 -7.1942 10.8063 REMARK 3 T TENSOR REMARK 3 T11: 0.3634 T22: 0.1989 REMARK 3 T33: 0.2629 T12: 0.0547 REMARK 3 T13: 0.1905 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.1547 L22: 0.9481 REMARK 3 L33: 1.0620 L12: 0.0019 REMARK 3 L13: -0.1769 L23: -0.0930 REMARK 3 S TENSOR REMARK 3 S11: -0.1076 S12: 0.1910 S13: -0.2132 REMARK 3 S21: -0.8201 S22: -0.1193 S23: -0.4271 REMARK 3 S31: 0.4688 S32: 0.1922 S33: -0.0953 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5900 -4.5929 20.5351 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.1861 REMARK 3 T33: 0.2144 T12: -0.0238 REMARK 3 T13: -0.0069 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.4098 L22: 2.1152 REMARK 3 L33: 0.8527 L12: 0.2716 REMARK 3 L13: 1.0708 L23: -0.1405 REMARK 3 S TENSOR REMARK 3 S11: -0.1260 S12: -0.1103 S13: 0.0523 REMARK 3 S21: -0.3149 S22: 0.1700 S23: 0.4780 REMARK 3 S31: 0.1991 S32: -0.3187 S33: 0.0465 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0361 -7.9837 5.3086 REMARK 3 T TENSOR REMARK 3 T11: 0.5907 T22: 0.4456 REMARK 3 T33: 0.2344 T12: -0.1595 REMARK 3 T13: 0.0203 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 1.5344 L22: 4.5012 REMARK 3 L33: 1.7421 L12: 0.5516 REMARK 3 L13: -1.6274 L23: -0.4786 REMARK 3 S TENSOR REMARK 3 S11: -0.6134 S12: 0.9700 S13: -0.1248 REMARK 3 S21: -1.3023 S22: 0.2524 S23: 0.5414 REMARK 3 S31: 0.6851 S32: -0.7603 S33: -1.4796 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9377 -5.2875 19.8925 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1409 REMARK 3 T33: 0.1618 T12: -0.0032 REMARK 3 T13: 0.0305 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.5196 L22: 2.0879 REMARK 3 L33: 1.8648 L12: 1.2728 REMARK 3 L13: -0.6074 L23: -0.7103 REMARK 3 S TENSOR REMARK 3 S11: -0.2057 S12: -0.1076 S13: -0.0713 REMARK 3 S21: -0.1905 S22: 0.0943 S23: -0.2938 REMARK 3 S31: 0.2038 S32: -0.0078 S33: -0.0774 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2340 1.2758 27.6709 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.2016 REMARK 3 T33: 0.2190 T12: 0.0252 REMARK 3 T13: -0.0345 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.1845 L22: 1.4121 REMARK 3 L33: 2.3049 L12: 0.4353 REMARK 3 L13: 0.0458 L23: 0.1805 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.0740 S13: 0.0101 REMARK 3 S21: 0.1628 S22: -0.0086 S23: -0.3338 REMARK 3 S31: 0.2110 S32: 0.1573 S33: 0.0048 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1442 18.9626 19.4412 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.2376 REMARK 3 T33: 0.3102 T12: -0.0083 REMARK 3 T13: -0.0172 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.0018 L22: 0.6109 REMARK 3 L33: 0.3789 L12: 0.0742 REMARK 3 L13: 0.0406 L23: 0.3507 REMARK 3 S TENSOR REMARK 3 S11: -0.2455 S12: 0.0319 S13: 0.0740 REMARK 3 S21: 0.0706 S22: 0.2714 S23: -0.4754 REMARK 3 S31: -0.2458 S32: 0.2615 S33: 0.0062 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1993 9.5982 28.8530 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.2492 REMARK 3 T33: 0.3607 T12: 0.0023 REMARK 3 T13: -0.1341 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.4160 L22: 0.5839 REMARK 3 L33: 1.4204 L12: -0.4845 REMARK 3 L13: 0.7765 L23: -0.8942 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.2302 S13: -0.1307 REMARK 3 S21: 0.6955 S22: -0.0421 S23: -0.5380 REMARK 3 S31: -0.2105 S32: 0.3488 S33: 0.0075 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0154 6.5042 13.2737 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.4879 REMARK 3 T33: 0.4612 T12: -0.0182 REMARK 3 T13: 0.0594 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 0.0304 L22: 0.2954 REMARK 3 L33: 0.2801 L12: 0.0445 REMARK 3 L13: -0.0899 L23: -0.0427 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: -0.1791 S13: -0.1108 REMARK 3 S21: -0.3571 S22: -0.0710 S23: -0.7250 REMARK 3 S31: 0.2055 S32: 0.9022 S33: 0.0024 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6539 -10.7698 32.5262 REMARK 3 T TENSOR REMARK 3 T11: 0.2221 T22: 0.2109 REMARK 3 T33: 0.1994 T12: -0.0179 REMARK 3 T13: -0.0101 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.0493 L22: 0.1525 REMARK 3 L33: 0.0464 L12: 0.0150 REMARK 3 L13: -0.0356 L23: -0.0291 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: -0.1903 S13: 0.0968 REMARK 3 S21: 0.7245 S22: -0.0808 S23: 0.1793 REMARK 3 S31: 0.2353 S32: -0.2274 S33: -0.0010 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7401 -12.9295 37.3130 REMARK 3 T TENSOR REMARK 3 T11: 0.5882 T22: 0.4073 REMARK 3 T33: 0.3015 T12: 0.0134 REMARK 3 T13: -0.1849 T23: -0.0978 REMARK 3 L TENSOR REMARK 3 L11: 2.3771 L22: 6.1958 REMARK 3 L33: 2.5460 L12: -1.1441 REMARK 3 L13: 1.5316 L23: 1.5278 REMARK 3 S TENSOR REMARK 3 S11: -0.2843 S12: -0.2110 S13: 0.2725 REMARK 3 S21: 0.1592 S22: 0.4615 S23: -0.4785 REMARK 3 S31: -0.2727 S32: 0.0285 S33: 0.1366 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43410 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.468 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 53.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6TYV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM FORMATE, 20 % (W/V) REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.28700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.58150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.58150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.28700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 188 REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 PHE A 236 REMARK 465 LYS A 237 REMARK 465 LYS A 238 REMARK 465 ILE A 239 REMARK 465 GLU A 240 REMARK 465 ARG A 241 REMARK 465 ARG A 242 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 THR B 8 REMARK 465 GLN B 20 REMARK 465 VAL B 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 35 NZ REMARK 470 LYS A 50 CE NZ REMARK 470 ARG A 69 CD NE CZ NH1 NH2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ASP A 71 CG OD1 OD2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 155 CE NZ REMARK 470 LYS A 194 CD CE NZ REMARK 470 GLU A 202 CD OE1 OE2 REMARK 470 GLU A 218 CD OE1 OE2 REMARK 470 SER A 221 OG REMARK 470 ARG A 227 CD NE CZ NH1 NH2 REMARK 470 ARG A 232 CD NE CZ NH1 NH2 REMARK 470 LYS B 9 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 18.90 -140.31 REMARK 500 ASP A 64 89.30 -154.62 REMARK 500 GLU A 70 121.02 -27.70 REMARK 500 PRO A 165 31.05 -83.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TYZ RELATED DB: PDB REMARK 900 6TYZ CONTAINS THE SAME PROTEIN COMPLEXED WITH APLF REMARK 900 RELATED ID: 6TYV RELATED DB: PDB REMARK 900 6TYV CONTAINS THE SAME PROTEIN COMPLEXED WITH WRN REMARK 900 RELATED ID: 6TYT RELATED DB: PDB REMARK 900 6TYT CONTAINS THE MUTANT PROTEIN COMPLEXED WITH APLF AND XLF REMARK 900 RELATED ID: 6TYW RELATED DB: PDB REMARK 900 6TYW CONTAINS THE MUTANT PROTEIN COMPLEXED WITH APLF REMARK 900 RELATED ID: 6TYX RELATED DB: PDB REMARK 900 6TYX CONTAINS THE MUTANT PROTEIN COMPLEXED WITH XLF DBREF1 6TYU A 1 242 UNP A0A1L8EVE5_XENLA DBREF2 6TYU A A0A1L8EVE5 1 242 DBREF 6TYU B 6 21 PDB 6TYU 6TYU 6 21 SEQADV 6TYU MET A -6 UNP A0A1L8EVE INITIATING METHIONINE SEQADV 6TYU HIS A -5 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYU HIS A -4 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYU HIS A -3 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYU HIS A -2 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYU HIS A -1 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYU HIS A 0 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYU A UNP A0A1L8EVE GLU 171 DELETION SEQADV 6TYU A UNP A0A1L8EVE GLU 172 DELETION SEQADV 6TYU A UNP A0A1L8EVE PHE 173 DELETION SEQADV 6TYU A UNP A0A1L8EVE GLY 174 DELETION SEQADV 6TYU A UNP A0A1L8EVE GLY 175 DELETION SEQADV 6TYU A UNP A0A1L8EVE SER 176 DELETION SEQADV 6TYU A UNP A0A1L8EVE SER 177 DELETION SEQADV 6TYU A UNP A0A1L8EVE ASN 178 DELETION SEQADV 6TYU A UNP A0A1L8EVE ASN 179 DELETION SEQADV 6TYU A UNP A0A1L8EVE ARG 180 DELETION SEQADV 6TYU A UNP A0A1L8EVE GLY 181 DELETION SEQADV 6TYU A UNP A0A1L8EVE ASN 182 DELETION SEQADV 6TYU A UNP A0A1L8EVE ALA 183 DELETION SEQADV 6TYU A UNP A0A1L8EVE GLY 184 DELETION SEQADV 6TYU A UNP A0A1L8EVE SER 185 DELETION SEQADV 6TYU A UNP A0A1L8EVE SER 186 DELETION SEQADV 6TYU A UNP A0A1L8EVE ASP 187 DELETION SEQADV 6TYU A UNP A0A1L8EVE ARG 188 DELETION SEQADV 6TYU SER A 190 UNP A0A1L8EVE CYS 190 ENGINEERED MUTATION SEQRES 1 A 231 MET HIS HIS HIS HIS HIS HIS MET ALA ARG ALA ALA LYS SEQRES 2 A 231 SER ALA VAL VAL LEU CYS MET ASP VAL GLY LEU ALA MET SEQRES 3 A 231 SER HIS SER ASN GLN GLY LYS GLU SER PRO PHE GLU GLN SEQRES 4 A 231 ALA LYS LYS VAL MET MET LEU PHE LEU GLN ARG GLN VAL SEQRES 5 A 231 PHE ALA GLU SER LYS ASP GLU ILE ALA VAL VAL LEU TYR SEQRES 6 A 231 GLY THR ASP THR THR ASP ASN ALA LEU ALA ARG GLU ASP SEQRES 7 A 231 GLN TYR GLU ASN ILE SER VAL HIS ARG HIS LEU MET LEU SEQRES 8 A 231 PRO ASP PHE ASP LEU LEU GLU GLN ILE GLU ASN VAL VAL SEQRES 9 A 231 GLU PRO GLY SER VAL GLN ALA ASP PHE LEU ASP ALA LEU SEQRES 10 A 231 ILE VAL SER MET ASP LEU LEU GLN LYS GLU THR LEU GLY SEQRES 11 A 231 LYS LYS TYR THR ARG LEU HIS ILE ALA VAL PHE SER ASP SEQRES 12 A 231 LEU SER SER PRO PHE SER VAL ASP GLN LEU GLU VAL ILE SEQRES 13 A 231 ILE ALA ASN LEU LYS LYS ALA GLU ILE THR LEU GLN PHE SEQRES 14 A 231 PHE LEU PRO PHE SER VAL ASP GLU GLY SER GLY PRO GLY SEQRES 15 A 231 LYS GLY LEU SER ASP GLN GLN LYS GLU GLY ILE GLU MET SEQRES 16 A 231 VAL ARG LYS ILE MET PHE SER LEU ASP GLY GLU GLU GLY SEQRES 17 A 231 LEU SER GLU VAL PHE THR PHE ARG ASP SER LEU GLU ARG SEQRES 18 A 231 LEU SER ILE PHE LYS LYS ILE GLU ARG ARG SEQRES 1 B 16 SER GLU THR LYS THR ARG VAL LEU PRO SER TRP LEU THR SEQRES 2 B 16 ALA GLN VAL FORMUL 3 HOH *192(H2 O) HELIX 1 AA1 GLY A 16 HIS A 21 5 6 HELIX 2 AA2 SER A 28 ALA A 47 1 20 HELIX 3 AA3 ASP A 86 VAL A 96 1 11 HELIX 4 AA4 ASP A 105 THR A 121 1 17 HELIX 5 AA5 GLN A 145 ALA A 156 1 12 HELIX 6 AA6 SER A 197 GLY A 216 1 20 HELIX 7 AA7 GLU A 217 GLU A 222 5 6 HELIX 8 AA8 PHE A 226 SER A 234 1 9 HELIX 9 AA9 PRO B 14 ALA B 19 1 6 SHEET 1 AA1 6 ILE A 76 MET A 83 0 SHEET 2 AA1 6 GLU A 52 TYR A 58 -1 N LEU A 57 O SER A 77 SHEET 3 AA1 6 ALA A 8 ASP A 14 1 N VAL A 9 O ALA A 54 SHEET 4 AA1 6 LEU A 129 PHE A 134 1 O ALA A 132 N CYS A 12 SHEET 5 AA1 6 ILE A 158 LEU A 164 1 O PHE A 163 N VAL A 133 SHEET 6 AA1 6 PHE A 224 THR A 225 1 O PHE A 224 N PHE A 162 CRYST1 44.574 71.350 79.163 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022435 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012632 0.00000