HEADER DNA BINDING PROTEIN 09-AUG-19 6TYV TITLE STRUCTURE OF KU80 VON WILLEBRAND DOMAIN COMPLEXED WITH WRN KU BINDING TITLE 2 MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KU80 VON WILLEBRAND DOMAIN; COMPND 5 EC: 3.6.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: THR-THR-ALA-GLN-GLN-ARG-LYS-CYS-PRO-GLU-TRP-MET-ASN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: WRN KU BINDING MOTIF; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: XRCC5, XRCC5-A-PROV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS KU80 VON WILLEBRAND FACTOR A DOMAIN, FLUORINE-19 NMR, KU BINDING KEYWDS 2 MOTIF, CONDITIONAL BINDING SITE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.MIN,L.C.PEDERSEN REVDAT 2 11-OCT-23 6TYV 1 REMARK REVDAT 1 27-NOV-19 6TYV 0 JRNL AUTH K.KIM,J.MIN,T.W.KIRBY,S.A.GABEL,L.C.PEDERSEN,R.E.LONDON JRNL TITL LIGAND BINDING CHARACTERISTICS OF THE KU80 VON WILLEBRAND JRNL TITL 2 DOMAIN. JRNL REF DNA REPAIR (AMST.) V. 85 02739 2019 JRNL REFN ISSN 1568-7856 JRNL PMID 31733588 JRNL DOI 10.1016/J.DNAREP.2019.102739 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 18833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.012 REMARK 3 FREE R VALUE TEST SET COUNT : 944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5200 - 3.6835 0.98 2771 146 0.1668 0.2131 REMARK 3 2 3.6835 - 2.9241 0.99 2673 142 0.1987 0.2301 REMARK 3 3 2.9241 - 2.5545 1.00 2638 140 0.2123 0.2428 REMARK 3 4 2.5545 - 2.3210 1.00 2618 138 0.2099 0.2575 REMARK 3 5 2.3210 - 2.1547 1.00 2643 139 0.2057 0.2587 REMARK 3 6 2.1547 - 2.0277 0.99 2596 137 0.2216 0.2884 REMARK 3 7 2.0277 - 1.9262 0.75 1950 102 0.2262 0.2519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.193 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.581 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1726 REMARK 3 ANGLE : 0.865 2343 REMARK 3 CHIRALITY : 0.050 279 REMARK 3 PLANARITY : 0.005 301 REMARK 3 DIHEDRAL : 13.459 623 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.7226 150.4949 92.2556 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.2358 REMARK 3 T33: 0.2530 T12: 0.0002 REMARK 3 T13: 0.0007 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 4.4208 L22: 3.2512 REMARK 3 L33: 2.4632 L12: -3.6321 REMARK 3 L13: 0.0011 L23: -0.8239 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.0295 S13: -0.0014 REMARK 3 S21: -0.4894 S22: -0.0484 S23: -0.0378 REMARK 3 S31: -0.0082 S32: 0.0161 S33: 0.1034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.1493 141.6172 86.9005 REMARK 3 T TENSOR REMARK 3 T11: 0.4009 T22: 0.2598 REMARK 3 T33: 0.2803 T12: 0.0269 REMARK 3 T13: 0.1308 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.0152 L22: 2.7563 REMARK 3 L33: 1.2810 L12: -0.9273 REMARK 3 L13: -0.7850 L23: 1.5880 REMARK 3 S TENSOR REMARK 3 S11: -0.2174 S12: 0.1656 S13: 0.0583 REMARK 3 S21: -0.8065 S22: 0.0029 S23: -0.7780 REMARK 3 S31: 0.3199 S32: 0.2766 S33: -0.2244 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.4776 137.9197 100.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.2291 REMARK 3 T33: 0.2670 T12: -0.0318 REMARK 3 T13: -0.0179 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.8482 L22: 5.7250 REMARK 3 L33: 1.3864 L12: -0.5393 REMARK 3 L13: 1.0750 L23: 0.8464 REMARK 3 S TENSOR REMARK 3 S11: -0.2649 S12: -0.0959 S13: -0.1348 REMARK 3 S21: -0.5882 S22: 0.2319 S23: 0.7615 REMARK 3 S31: 0.0585 S32: -0.4176 S33: 0.3203 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.6960 135.3447 84.4090 REMARK 3 T TENSOR REMARK 3 T11: 0.5614 T22: 0.4788 REMARK 3 T33: 0.1929 T12: -0.1514 REMARK 3 T13: 0.0279 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.8368 L22: 1.5623 REMARK 3 L33: 2.0573 L12: 0.9259 REMARK 3 L13: 0.2340 L23: -1.3721 REMARK 3 S TENSOR REMARK 3 S11: -0.5060 S12: 0.7097 S13: -0.1891 REMARK 3 S21: -0.6638 S22: 0.3420 S23: -0.1106 REMARK 3 S31: 0.4056 S32: -0.4059 S33: 0.0327 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.0023 147.4744 95.5666 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.1183 REMARK 3 T33: 0.3687 T12: -0.0689 REMARK 3 T13: -0.0781 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 2.4480 L22: 3.1678 REMARK 3 L33: 4.9652 L12: -1.8394 REMARK 3 L13: -1.8883 L23: 0.2997 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: -0.1169 S13: 0.2623 REMARK 3 S21: 0.0585 S22: 0.2644 S23: 0.4737 REMARK 3 S31: 0.2397 S32: -0.1187 S33: 0.4589 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.6714 135.7390 103.6736 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.1884 REMARK 3 T33: 0.1591 T12: 0.0068 REMARK 3 T13: -0.0184 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 6.7984 L22: 4.1353 REMARK 3 L33: 7.3501 L12: -2.9275 REMARK 3 L13: -2.6052 L23: 3.6246 REMARK 3 S TENSOR REMARK 3 S11: -0.1621 S12: -0.1227 S13: -0.0146 REMARK 3 S21: 0.2701 S22: -0.0121 S23: -0.3954 REMARK 3 S31: 0.1905 S32: 0.0476 S33: 0.1889 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.1921 140.7084 102.2445 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2493 REMARK 3 T33: 0.3555 T12: 0.0345 REMARK 3 T13: 0.0495 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.0016 L22: 1.2096 REMARK 3 L33: 1.3883 L12: -0.0205 REMARK 3 L13: -0.4626 L23: 0.0436 REMARK 3 S TENSOR REMARK 3 S11: -0.2675 S12: -0.1035 S13: -0.3383 REMARK 3 S21: 0.2837 S22: -0.0610 S23: -0.4624 REMARK 3 S31: 0.3443 S32: 0.1844 S33: 0.1530 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.9219 147.2714 104.3782 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.2820 REMARK 3 T33: 0.3514 T12: 0.0167 REMARK 3 T13: -0.0543 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.2064 L22: 2.8752 REMARK 3 L33: 2.3537 L12: 0.1712 REMARK 3 L13: 0.5888 L23: -0.8974 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: -0.0756 S13: -0.0162 REMARK 3 S21: 0.0692 S22: -0.1166 S23: -0.5208 REMARK 3 S31: 0.0061 S32: 0.3203 S33: 0.1082 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.3779 152.7425 108.6456 REMARK 3 T TENSOR REMARK 3 T11: 0.3789 T22: 0.3328 REMARK 3 T33: 0.4218 T12: -0.0498 REMARK 3 T13: -0.1779 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 4.1242 L22: 3.7512 REMARK 3 L33: 2.9417 L12: -3.6220 REMARK 3 L13: 2.5057 L23: -3.0958 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.3992 S13: -0.2684 REMARK 3 S21: 0.8300 S22: -0.0969 S23: -0.5263 REMARK 3 S31: -0.3053 S32: 0.1096 S33: 0.0093 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.6998 149.4496 95.1373 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.4835 REMARK 3 T33: 0.5282 T12: -0.0225 REMARK 3 T13: 0.0742 T23: 0.1086 REMARK 3 L TENSOR REMARK 3 L11: 7.1328 L22: 3.6115 REMARK 3 L33: 7.5926 L12: -1.0109 REMARK 3 L13: 7.3465 L23: -0.7331 REMARK 3 S TENSOR REMARK 3 S11: -0.1278 S12: 0.1758 S13: -0.5839 REMARK 3 S21: -0.2575 S22: -0.2389 S23: -0.6457 REMARK 3 S31: 0.2274 S32: 0.8596 S33: 0.1860 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.4614 137.7935 113.7515 REMARK 3 T TENSOR REMARK 3 T11: 0.5091 T22: 0.3393 REMARK 3 T33: 0.3387 T12: -0.0767 REMARK 3 T13: -0.0378 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 6.6848 L22: 4.8840 REMARK 3 L33: 3.2298 L12: -1.7081 REMARK 3 L13: -2.9908 L23: -1.6749 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: -0.2842 S13: 0.3946 REMARK 3 S21: 1.8346 S22: -0.1468 S23: 0.0341 REMARK 3 S31: -0.1699 S32: 0.0244 S33: 0.1591 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18919 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JEQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-HEPES PH 7.5, 25 % (W/V) REMARK 280 PEG3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.05600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.80300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.67550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.80300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.05600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.67550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 187 REMARK 465 GLU A 188 REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 GLY A 191 REMARK 465 PHE A 236 REMARK 465 LYS A 237 REMARK 465 LYS A 238 REMARK 465 ILE A 239 REMARK 465 GLU A 240 REMARK 465 ARG A 241 REMARK 465 ARG A 242 REMARK 465 VAL B 21 REMARK 465 GLN B 22 REMARK 465 ASN B 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 26 CD CE NZ REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 50 CE NZ REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ASP A 71 CG OD1 OD2 REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 GLU A 91 CD OE1 OE2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 128 NE CZ NH1 NH2 REMARK 470 LYS A 155 CE NZ REMARK 470 LYS A 194 CE NZ REMARK 470 ASP A 215 CG OD1 OD2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 SER A 221 OG REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ARG A 227 NE CZ NH1 NH2 REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 235 CG1 CG2 CD1 REMARK 470 GLN B 11 CG CD OE1 NE2 REMARK 470 GLN B 12 CD OE1 NE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 22.53 -140.23 REMARK 500 ASP A 64 89.87 -158.08 REMARK 500 GLU A 70 75.85 43.45 REMARK 500 PRO A 165 31.39 -85.52 REMARK 500 GLU A 222 31.55 -88.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TYZ RELATED DB: PDB REMARK 900 6TYZ CONTAINS THE SAME PROTEIN COMPLEXED WITH APLF REMARK 900 RELATED ID: 6TYU RELATED DB: PDB REMARK 900 6TYU CONTAINS THE SAME PROTEIN COMPLEXED WITH MRI REMARK 900 RELATED ID: 6TYT RELATED DB: PDB REMARK 900 6TYT CONTAINS THE MUTANT PROTEIN COMPLEXED WITH APLF AND XLF REMARK 900 RELATED ID: 6TYW RELATED DB: PDB REMARK 900 6TYW CONTAINS THE MUTANT PROTEIN COMPLEXED WITH APLF REMARK 900 RELATED ID: 6TYX RELATED DB: PDB REMARK 900 6TYX CONTAINS THE MUTANT PROTEIN COMPLEXED WITH XLF DBREF1 6TYV A 1 242 UNP A0A1L8EVE5_XENLA DBREF2 6TYV A A0A1L8EVE5 1 242 DBREF 6TYV B 8 23 PDB 6TYV 6TYV 8 23 SEQADV 6TYV MET A -6 UNP A0A1L8EVE INITIATING METHIONINE SEQADV 6TYV HIS A -5 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYV HIS A -4 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYV HIS A -3 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYV HIS A -2 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYV HIS A -1 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYV HIS A 0 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYV A UNP A0A1L8EVE GLU 171 DELETION SEQADV 6TYV A UNP A0A1L8EVE GLU 172 DELETION SEQADV 6TYV A UNP A0A1L8EVE PHE 173 DELETION SEQADV 6TYV A UNP A0A1L8EVE GLY 174 DELETION SEQADV 6TYV A UNP A0A1L8EVE GLY 175 DELETION SEQADV 6TYV A UNP A0A1L8EVE SER 176 DELETION SEQADV 6TYV A UNP A0A1L8EVE SER 177 DELETION SEQADV 6TYV A UNP A0A1L8EVE ASN 178 DELETION SEQADV 6TYV A UNP A0A1L8EVE ASN 179 DELETION SEQADV 6TYV A UNP A0A1L8EVE ARG 180 DELETION SEQADV 6TYV A UNP A0A1L8EVE GLY 181 DELETION SEQADV 6TYV A UNP A0A1L8EVE ASN 182 DELETION SEQADV 6TYV A UNP A0A1L8EVE ALA 183 DELETION SEQADV 6TYV A UNP A0A1L8EVE GLY 184 DELETION SEQADV 6TYV A UNP A0A1L8EVE SER 185 DELETION SEQADV 6TYV A UNP A0A1L8EVE SER 186 DELETION SEQADV 6TYV A UNP A0A1L8EVE ASP 187 DELETION SEQADV 6TYV A UNP A0A1L8EVE ARG 188 DELETION SEQADV 6TYV SER A 190 UNP A0A1L8EVE CYS 190 ENGINEERED MUTATION SEQRES 1 A 231 MET HIS HIS HIS HIS HIS HIS MET ALA ARG ALA ALA LYS SEQRES 2 A 231 SER ALA VAL VAL LEU CYS MET ASP VAL GLY LEU ALA MET SEQRES 3 A 231 SER HIS SER ASN GLN GLY LYS GLU SER PRO PHE GLU GLN SEQRES 4 A 231 ALA LYS LYS VAL MET MET LEU PHE LEU GLN ARG GLN VAL SEQRES 5 A 231 PHE ALA GLU SER LYS ASP GLU ILE ALA VAL VAL LEU TYR SEQRES 6 A 231 GLY THR ASP THR THR ASP ASN ALA LEU ALA ARG GLU ASP SEQRES 7 A 231 GLN TYR GLU ASN ILE SER VAL HIS ARG HIS LEU MET LEU SEQRES 8 A 231 PRO ASP PHE ASP LEU LEU GLU GLN ILE GLU ASN VAL VAL SEQRES 9 A 231 GLU PRO GLY SER VAL GLN ALA ASP PHE LEU ASP ALA LEU SEQRES 10 A 231 ILE VAL SER MET ASP LEU LEU GLN LYS GLU THR LEU GLY SEQRES 11 A 231 LYS LYS TYR THR ARG LEU HIS ILE ALA VAL PHE SER ASP SEQRES 12 A 231 LEU SER SER PRO PHE SER VAL ASP GLN LEU GLU VAL ILE SEQRES 13 A 231 ILE ALA ASN LEU LYS LYS ALA GLU ILE THR LEU GLN PHE SEQRES 14 A 231 PHE LEU PRO PHE SER VAL ASP GLU GLY SER GLY PRO GLY SEQRES 15 A 231 LYS GLY LEU SER ASP GLN GLN LYS GLU GLY ILE GLU MET SEQRES 16 A 231 VAL ARG LYS ILE MET PHE SER LEU ASP GLY GLU GLU GLY SEQRES 17 A 231 LEU SER GLU VAL PHE THR PHE ARG ASP SER LEU GLU ARG SEQRES 18 A 231 LEU SER ILE PHE LYS LYS ILE GLU ARG ARG SEQRES 1 B 16 THR THR ALA GLN GLN ARG LYS CYS PRO GLU TRP MET ASN SEQRES 2 B 16 VAL GLN ASN FORMUL 3 HOH *113(H2 O) HELIX 1 AA1 GLY A 16 HIS A 21 5 6 HELIX 2 AA2 SER A 28 ALA A 47 1 20 HELIX 3 AA3 ASP A 86 VAL A 96 1 11 HELIX 4 AA4 ASP A 105 THR A 121 1 17 HELIX 5 AA5 GLN A 145 ALA A 156 1 12 HELIX 6 AA6 SER A 197 GLY A 216 1 20 HELIX 7 AA7 GLU A 217 SER A 221 5 5 HELIX 8 AA8 ASP A 228 ILE A 235 1 8 HELIX 9 AA9 PRO B 16 ASN B 20 5 5 SHEET 1 AA1 6 ILE A 76 MET A 83 0 SHEET 2 AA1 6 GLU A 52 TYR A 58 -1 N LEU A 57 O SER A 77 SHEET 3 AA1 6 ALA A 8 ASP A 14 1 N VAL A 9 O ALA A 54 SHEET 4 AA1 6 LEU A 129 PHE A 134 1 O ALA A 132 N CYS A 12 SHEET 5 AA1 6 ILE A 158 LEU A 164 1 O PHE A 163 N VAL A 133 SHEET 6 AA1 6 VAL A 223 THR A 225 1 O PHE A 224 N PHE A 162 CRYST1 44.112 71.351 79.606 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012562 0.00000