HEADER DNA BINDING PROTEIN 09-AUG-19 6TYW TITLE STRUCTURE OF KU80 VON WILLEBRAND DOMAIN S229A MUTANT COMPLEXED WITH TITLE 2 APLF KU BINDING MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KU80 VON WILLEBRAND DOMAIN; COMPND 5 EC: 3.6.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLU-ARG-LYS-ARG-ILE-LEU-PRO-THR-TRP-MET-LEU-ALA-GLU; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: APLF KU BINDING MOTIF; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: XELAEV_18044412MG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS KU80 VON WILLEBRAND FACTOR A DOMAIN, FLUORINE-19 NMR, KU BINDING KEYWDS 2 MOTIF, CONDITIONAL BINDING SITE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.MIN,L.C.PEDERSEN REVDAT 2 11-OCT-23 6TYW 1 REMARK REVDAT 1 27-NOV-19 6TYW 0 JRNL AUTH K.KIM,J.MIN,T.W.KIRBY,S.A.GABEL,L.C.PEDERSEN,R.E.LONDON JRNL TITL LIGAND BINDING CHARACTERISTICS OF THE KU80 VON WILLEBRAND JRNL TITL 2 DOMAIN. JRNL REF DNA REPAIR (AMST.) V. 85 02739 2019 JRNL REFN ISSN 1568-7856 JRNL PMID 31733588 JRNL DOI 10.1016/J.DNAREP.2019.102739 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 27905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.013 REMARK 3 FREE R VALUE TEST SET COUNT : 1399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.8064 - 3.6573 1.00 2844 152 0.1620 0.1941 REMARK 3 2 3.6573 - 2.9048 1.00 2722 142 0.1739 0.1920 REMARK 3 3 2.9048 - 2.5381 0.99 2674 143 0.1846 0.2115 REMARK 3 4 2.5381 - 2.3063 0.99 2650 136 0.1837 0.2818 REMARK 3 5 2.3063 - 2.1411 0.99 2674 142 0.1861 0.2277 REMARK 3 6 2.1411 - 2.0150 1.00 2653 142 0.1893 0.2333 REMARK 3 7 2.0150 - 1.9141 1.00 2652 139 0.1968 0.2658 REMARK 3 8 1.9141 - 1.8308 1.00 2632 134 0.1978 0.2374 REMARK 3 9 1.8308 - 1.7604 0.99 2634 146 0.2117 0.2299 REMARK 3 10 1.7604 - 1.6997 0.90 2371 123 0.2201 0.2912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.151 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1878 REMARK 3 ANGLE : 0.914 2544 REMARK 3 CHIRALITY : 0.060 293 REMARK 3 PLANARITY : 0.006 332 REMARK 3 DIHEDRAL : 12.851 691 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1828 6.9930 -13.3011 REMARK 3 T TENSOR REMARK 3 T11: 0.1690 T22: 0.1818 REMARK 3 T33: 0.1824 T12: 0.0025 REMARK 3 T13: 0.0175 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 3.3411 L22: 6.9677 REMARK 3 L33: 1.6781 L12: 4.1219 REMARK 3 L13: -0.1589 L23: 0.9534 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: -0.0738 S13: 0.0114 REMARK 3 S21: 0.4043 S22: -0.0388 S23: 0.0719 REMARK 3 S31: -0.0090 S32: 0.0540 S33: 0.0289 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5932 -1.2780 -7.8240 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.1919 REMARK 3 T33: 0.1992 T12: -0.0114 REMARK 3 T13: 0.0834 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.0661 L22: 1.2416 REMARK 3 L33: 1.6951 L12: -0.3456 REMARK 3 L13: -0.9341 L23: -0.2131 REMARK 3 S TENSOR REMARK 3 S11: -0.2972 S12: -0.1095 S13: -0.1761 REMARK 3 S21: 0.4031 S22: 0.0693 S23: 0.1593 REMARK 3 S31: 0.4227 S32: -0.1135 S33: -0.0563 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7173 -4.6482 -20.9119 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1758 REMARK 3 T33: 0.2218 T12: 0.0306 REMARK 3 T13: -0.0036 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.7114 L22: 5.1282 REMARK 3 L33: 1.6088 L12: 0.2380 REMARK 3 L13: 1.1389 L23: -0.6716 REMARK 3 S TENSOR REMARK 3 S11: -0.0717 S12: 0.0556 S13: 0.0479 REMARK 3 S21: 0.2526 S22: 0.1170 S23: -0.5675 REMARK 3 S31: 0.1740 S32: 0.3442 S33: 0.0241 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6802 -8.3163 -5.4657 REMARK 3 T TENSOR REMARK 3 T11: 0.5196 T22: 0.5134 REMARK 3 T33: 0.2891 T12: 0.1969 REMARK 3 T13: 0.0649 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 1.2500 L22: 4.1187 REMARK 3 L33: 3.4712 L12: -0.2858 REMARK 3 L13: -1.0119 L23: 2.9288 REMARK 3 S TENSOR REMARK 3 S11: -0.3845 S12: -0.7818 S13: -0.3123 REMARK 3 S21: 1.0562 S22: 0.2176 S23: -0.3657 REMARK 3 S31: 1.3792 S32: 0.4644 S33: 0.2111 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5164 -5.1519 -20.8871 REMARK 3 T TENSOR REMARK 3 T11: 0.1777 T22: 0.1671 REMARK 3 T33: 0.1811 T12: -0.0107 REMARK 3 T13: 0.0568 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.7811 L22: 2.2173 REMARK 3 L33: 2.1575 L12: -0.9414 REMARK 3 L13: -0.3250 L23: 0.9839 REMARK 3 S TENSOR REMARK 3 S11: -0.1448 S12: 0.0391 S13: -0.0268 REMARK 3 S21: 0.2932 S22: -0.0088 S23: 0.3891 REMARK 3 S31: 0.3131 S32: -0.0703 S33: 0.0180 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5875 0.7513 -28.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.2134 REMARK 3 T33: 0.2593 T12: 0.0009 REMARK 3 T13: -0.0335 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.3729 L22: 2.3806 REMARK 3 L33: 3.4180 L12: -0.2369 REMARK 3 L13: -0.1124 L23: 0.5930 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 0.0402 S13: 0.0166 REMARK 3 S21: -0.1343 S22: 0.0197 S23: 0.4057 REMARK 3 S31: 0.0634 S32: -0.1091 S33: 0.0310 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4772 20.6674 -20.0987 REMARK 3 T TENSOR REMARK 3 T11: 0.2989 T22: 0.2870 REMARK 3 T33: 0.3639 T12: 0.0209 REMARK 3 T13: -0.0054 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 4.2483 L22: 5.4464 REMARK 3 L33: 2.4148 L12: 1.5735 REMARK 3 L13: -0.5197 L23: -2.1213 REMARK 3 S TENSOR REMARK 3 S11: 0.1463 S12: 0.0538 S13: 0.5108 REMARK 3 S21: 0.2114 S22: 0.2660 S23: 0.9519 REMARK 3 S31: -0.1943 S32: -0.6682 S33: -0.4243 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4649 5.8999 -23.1121 REMARK 3 T TENSOR REMARK 3 T11: 0.2354 T22: 0.2957 REMARK 3 T33: 0.3835 T12: 0.0019 REMARK 3 T13: -0.0328 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.3756 L22: 2.6728 REMARK 3 L33: 3.1883 L12: -1.0529 REMARK 3 L13: 0.9277 L23: 1.8479 REMARK 3 S TENSOR REMARK 3 S11: -0.1179 S12: -0.1447 S13: -0.2791 REMARK 3 S21: 0.0366 S22: -0.1424 S23: 0.6808 REMARK 3 S31: 0.2213 S32: -0.4908 S33: 0.1657 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3736 -2.2912 -34.8958 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.2129 REMARK 3 T33: 0.1708 T12: 0.0290 REMARK 3 T13: 0.0489 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 9.0582 L22: 6.2434 REMARK 3 L33: 5.2598 L12: 4.6648 REMARK 3 L13: -1.4302 L23: 0.8127 REMARK 3 S TENSOR REMARK 3 S11: 0.3422 S12: 0.0373 S13: 0.1190 REMARK 3 S21: -0.3017 S22: -0.1756 S23: -0.3406 REMARK 3 S31: -0.3036 S32: 0.1198 S33: -0.1585 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 188 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3373 -12.8679 -34.6928 REMARK 3 T TENSOR REMARK 3 T11: 0.2725 T22: 0.2506 REMARK 3 T33: 0.2410 T12: 0.0216 REMARK 3 T13: -0.0566 T23: -0.0697 REMARK 3 L TENSOR REMARK 3 L11: 6.1872 L22: 1.8326 REMARK 3 L33: 7.8263 L12: 2.6535 REMARK 3 L13: -0.6092 L23: -2.1051 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: 0.5020 S13: -0.3940 REMARK 3 S21: -0.8746 S22: -0.1261 S23: 0.4790 REMARK 3 S31: 0.2465 S32: -0.5608 S33: 0.0788 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.699 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6TYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % (W/V) PEG3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.92350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.99100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.69150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.99100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.92350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.69150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 242 REMARK 465 LEU B 179 REMARK 465 ALA B 180 REMARK 465 HIS B 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 35 CE NZ REMARK 470 LYS A 50 CE NZ REMARK 470 ARG A 69 CD NE CZ NH1 NH2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 GLN A 92 OE1 NE2 REMARK 470 ILE A 93 CD1 REMARK 470 ASN A 95 CG OD1 ND2 REMARK 470 VAL A 96 CG1 CG2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLU A 170 CD OE1 OE2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 GLU A 218 CD OE1 OE2 REMARK 470 SER A 221 OG REMARK 470 ARG A 227 CD NE CZ NH1 NH2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 ILE A 239 CG1 CG2 CD1 REMARK 470 LYS B 183 CE NZ REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 89.70 -157.57 REMARK 500 ASP A 215 27.38 -153.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TYT RELATED DB: PDB REMARK 900 6TYT CONTAINS THE SAME PROTEIN COMPLEXED WITH APLF AND XLF REMARK 900 RELATED ID: 6TYX RELATED DB: PDB REMARK 900 6TYX CONTAINS THE SAME PROTEIN COMPLEXED WITH XLF REMARK 900 RELATED ID: 6TYZ RELATED DB: PDB REMARK 900 6TYZ CONTAINS THE WT-PROTEIN COMPLEXED WITH APLF REMARK 900 RELATED ID: 6TYU RELATED DB: PDB REMARK 900 6TYU CONTAINS THE WT-PROTEIN COMPLEXED WITH MRI REMARK 900 RELATED ID: 6TYV RELATED DB: PDB REMARK 900 6TYV CONTAINS THE WT-PROTEIN COMPLEXED WITH WRN DBREF1 6TYW A 1 242 UNP A0A1L8EVE5_XENLA DBREF2 6TYW A A0A1L8EVE5 1 242 DBREF 6TYW B 179 194 PDB 6TYW 6TYW 179 194 SEQADV 6TYW MET A -6 UNP A0A1L8EVE INITIATING METHIONINE SEQADV 6TYW HIS A -5 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYW HIS A -4 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYW HIS A -3 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYW HIS A -2 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYW HIS A -1 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYW HIS A 0 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYW A UNP A0A1L8EVE GLU 171 DELETION SEQADV 6TYW A UNP A0A1L8EVE GLU 172 DELETION SEQADV 6TYW A UNP A0A1L8EVE PHE 173 DELETION SEQADV 6TYW A UNP A0A1L8EVE GLY 174 DELETION SEQADV 6TYW A UNP A0A1L8EVE GLY 175 DELETION SEQADV 6TYW A UNP A0A1L8EVE SER 176 DELETION SEQADV 6TYW A UNP A0A1L8EVE SER 177 DELETION SEQADV 6TYW A UNP A0A1L8EVE ASN 178 DELETION SEQADV 6TYW A UNP A0A1L8EVE ASN 179 DELETION SEQADV 6TYW A UNP A0A1L8EVE ARG 180 DELETION SEQADV 6TYW A UNP A0A1L8EVE GLY 181 DELETION SEQADV 6TYW A UNP A0A1L8EVE ASN 182 DELETION SEQADV 6TYW A UNP A0A1L8EVE ALA 183 DELETION SEQADV 6TYW A UNP A0A1L8EVE GLY 184 DELETION SEQADV 6TYW A UNP A0A1L8EVE SER 185 DELETION SEQADV 6TYW A UNP A0A1L8EVE SER 186 DELETION SEQADV 6TYW A UNP A0A1L8EVE ASP 187 DELETION SEQADV 6TYW A UNP A0A1L8EVE ARG 188 DELETION SEQADV 6TYW SER A 190 UNP A0A1L8EVE CYS 190 ENGINEERED MUTATION SEQADV 6TYW ALA A 229 UNP A0A1L8EVE SER 229 ENGINEERED MUTATION SEQRES 1 A 231 MET HIS HIS HIS HIS HIS HIS MET ALA ARG ALA ALA LYS SEQRES 2 A 231 SER ALA VAL VAL LEU CYS MET ASP VAL GLY LEU ALA MET SEQRES 3 A 231 SER HIS SER ASN GLN GLY LYS GLU SER PRO PHE GLU GLN SEQRES 4 A 231 ALA LYS LYS VAL MET MET LEU PHE LEU GLN ARG GLN VAL SEQRES 5 A 231 PHE ALA GLU SER LYS ASP GLU ILE ALA VAL VAL LEU TYR SEQRES 6 A 231 GLY THR ASP THR THR ASP ASN ALA LEU ALA ARG GLU ASP SEQRES 7 A 231 GLN TYR GLU ASN ILE SER VAL HIS ARG HIS LEU MET LEU SEQRES 8 A 231 PRO ASP PHE ASP LEU LEU GLU GLN ILE GLU ASN VAL VAL SEQRES 9 A 231 GLU PRO GLY SER VAL GLN ALA ASP PHE LEU ASP ALA LEU SEQRES 10 A 231 ILE VAL SER MET ASP LEU LEU GLN LYS GLU THR LEU GLY SEQRES 11 A 231 LYS LYS TYR THR ARG LEU HIS ILE ALA VAL PHE SER ASP SEQRES 12 A 231 LEU SER SER PRO PHE SER VAL ASP GLN LEU GLU VAL ILE SEQRES 13 A 231 ILE ALA ASN LEU LYS LYS ALA GLU ILE THR LEU GLN PHE SEQRES 14 A 231 PHE LEU PRO PHE SER VAL ASP GLU GLY SER GLY PRO GLY SEQRES 15 A 231 LYS GLY LEU SER ASP GLN GLN LYS GLU GLY ILE GLU MET SEQRES 16 A 231 VAL ARG LYS ILE MET PHE SER LEU ASP GLY GLU GLU GLY SEQRES 17 A 231 LEU SER GLU VAL PHE THR PHE ARG ASP ALA LEU GLU ARG SEQRES 18 A 231 LEU SER ILE PHE LYS LYS ILE GLU ARG ARG SEQRES 1 B 16 LEU ALA GLU ARG LYS ARG ILE LEU PRO THR TRP MET LEU SEQRES 2 B 16 ALA GLU HIS HET EDO A 301 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *219(H2 O) HELIX 1 AA1 GLY A 16 HIS A 21 5 6 HELIX 2 AA2 SER A 28 ALA A 47 1 20 HELIX 3 AA3 ASP A 86 VAL A 97 1 12 HELIX 4 AA4 ASP A 105 THR A 121 1 17 HELIX 5 AA5 GLN A 145 GLU A 157 1 13 HELIX 6 AA6 SER A 197 SER A 221 1 25 HELIX 7 AA7 PHE A 226 LEU A 233 1 8 HELIX 8 AA8 PRO B 187 ALA B 192 1 6 SHEET 1 AA1 6 ILE A 76 MET A 83 0 SHEET 2 AA1 6 GLU A 52 TYR A 58 -1 N LEU A 57 O SER A 77 SHEET 3 AA1 6 SER A 7 ASP A 14 1 N VAL A 9 O ALA A 54 SHEET 4 AA1 6 ARG A 128 PHE A 134 1 O ALA A 132 N CYS A 12 SHEET 5 AA1 6 ILE A 158 LEU A 164 1 O GLN A 161 N VAL A 133 SHEET 6 AA1 6 VAL A 223 THR A 225 1 O PHE A 224 N PHE A 162 SITE 1 AC1 10 ASN A 23 ALA A 66 HIS A 81 ASP A 115 SITE 2 AC1 10 LEU A 116 LYS A 119 GLU A 120 GLY A 195 SITE 3 AC1 10 HOH A 457 HOH A 474 CRYST1 43.847 71.383 79.982 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022807 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012503 0.00000