HEADER TRANSFERASE 12-AUG-19 6TZM TITLE CRYSTAL STRUCTURE OF FUNGAL RNA KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 401-832; COMPND 5 EC: 6.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: LIG1, RLG1, TRL1, CAALFM_C702060WA, CAJ7.0238, CAO19.13864, SOURCE 8 CAO19.6511; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RNA LIGASE, RNA REPAIR, POLYNUCLEOTIDE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHUMAN,Y.GOLDGUR,A.BANERJEE REVDAT 5 13-MAR-24 6TZM 1 LINK REVDAT 4 01-JAN-20 6TZM 1 REMARK REVDAT 3 18-DEC-19 6TZM 1 JRNL REVDAT 2 27-NOV-19 6TZM 1 JRNL REVDAT 1 06-NOV-19 6TZM 0 JRNL AUTH A.BANERJEE,Y.GOLDGUR,B.SCHWER,S.SHUMAN JRNL TITL ATOMIC STRUCTURES OF THE RNA END-HEALING 5'-OH KINASE AND JRNL TITL 2 2',3'-CYCLIC PHOSPHODIESTERASE DOMAINS OF FUNGAL TRNA JRNL TITL 3 LIGASE: CONFORMATIONAL SWITCHES IN THE KINASE UPON BINDING JRNL TITL 4 OF THE GTP PHOSPHATE DONOR. JRNL REF NUCLEIC ACIDS RES. V. 47 11826 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31722405 JRNL DOI 10.1093/NAR/GKZ1049 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 42100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.520 REMARK 3 FREE R VALUE TEST SET COUNT : 3589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8070 - 5.0769 0.97 1607 151 0.1920 0.1850 REMARK 3 2 5.0769 - 4.0304 0.97 1625 149 0.1459 0.1558 REMARK 3 3 4.0304 - 3.5212 0.94 1562 151 0.1600 0.1800 REMARK 3 4 3.5212 - 3.1993 0.95 1584 142 0.1706 0.2323 REMARK 3 5 3.1993 - 2.9701 0.88 1463 139 0.1852 0.2138 REMARK 3 6 2.9701 - 2.7950 0.92 1533 147 0.1894 0.2204 REMARK 3 7 2.7950 - 2.6550 0.94 1547 146 0.1942 0.1988 REMARK 3 8 2.6550 - 2.5395 0.94 1601 145 0.1758 0.2102 REMARK 3 9 2.5395 - 2.4417 0.95 1571 145 0.1874 0.2149 REMARK 3 10 2.4417 - 2.3574 0.95 1586 150 0.1802 0.2539 REMARK 3 11 2.3574 - 2.2837 0.96 1589 144 0.1873 0.1931 REMARK 3 12 2.2837 - 2.2185 0.95 1575 150 0.1779 0.2112 REMARK 3 13 2.2185 - 2.1601 0.95 1620 145 0.2085 0.2603 REMARK 3 14 2.1601 - 2.1074 0.90 1484 137 0.1973 0.2159 REMARK 3 15 2.1074 - 2.0594 0.95 1588 143 0.2019 0.2136 REMARK 3 16 2.0594 - 2.0156 0.96 1599 152 0.1984 0.2036 REMARK 3 17 2.0156 - 1.9753 0.97 1599 156 0.2072 0.2123 REMARK 3 18 1.9753 - 1.9380 0.96 1615 156 0.2003 0.2299 REMARK 3 19 1.9380 - 1.9034 0.96 1606 152 0.2063 0.2399 REMARK 3 20 1.9034 - 1.8711 0.94 1582 144 0.2160 0.2513 REMARK 3 21 1.8711 - 1.8410 0.91 1517 142 0.2377 0.2069 REMARK 3 22 1.8410 - 1.8126 0.84 1371 126 0.2593 0.3120 REMARK 3 23 1.8126 - 1.7860 0.77 1281 118 0.2926 0.3488 REMARK 3 24 1.7860 - 1.7608 0.66 1130 101 0.3235 0.3505 REMARK 3 25 1.7608 - 1.7370 0.60 981 94 0.3509 0.3965 REMARK 3 26 1.7370 - 1.7145 0.41 695 64 0.3692 0.3620 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.3264 8.9706 91.9826 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1646 REMARK 3 T33: 0.1716 T12: 0.0005 REMARK 3 T13: -0.0163 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.7373 L22: 1.1154 REMARK 3 L33: 1.9280 L12: 0.3220 REMARK 3 L13: -0.0242 L23: -0.6577 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: 0.0192 S13: 0.0194 REMARK 3 S21: -0.0975 S22: 0.1192 S23: 0.1675 REMARK 3 S31: -0.0122 S32: -0.1941 S33: 0.0258 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 480 THROUGH 543 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.2932 11.8657 99.8323 REMARK 3 T TENSOR REMARK 3 T11: 0.1875 T22: 0.1668 REMARK 3 T33: 0.1350 T12: 0.0218 REMARK 3 T13: -0.0072 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.4524 L22: 1.9240 REMARK 3 L33: 0.9254 L12: 0.6970 REMARK 3 L13: 0.0421 L23: 0.0264 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: -0.0620 S13: 0.0442 REMARK 3 S21: 0.0169 S22: 0.0873 S23: 0.0275 REMARK 3 S31: -0.0051 S32: 0.0168 S33: -0.0094 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 544 THROUGH 568 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.4642 21.8044 103.1416 REMARK 3 T TENSOR REMARK 3 T11: 0.2066 T22: 0.1863 REMARK 3 T33: 0.2146 T12: -0.0018 REMARK 3 T13: -0.0154 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 2.4126 L22: 6.5713 REMARK 3 L33: 2.4356 L12: -0.4288 REMARK 3 L13: -0.1153 L23: -1.4586 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: -0.2389 S13: 0.3009 REMARK 3 S21: 0.0949 S22: -0.0088 S23: -0.2258 REMARK 3 S31: -0.1813 S32: 0.1337 S33: 0.0150 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 569 THROUGH 629 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7016 6.0118 87.6139 REMARK 3 T TENSOR REMARK 3 T11: 0.1325 T22: 0.1311 REMARK 3 T33: 0.1357 T12: 0.0178 REMARK 3 T13: 0.0148 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.0716 L22: 1.6766 REMARK 3 L33: 2.2942 L12: 0.4219 REMARK 3 L13: -0.4732 L23: -0.9127 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: 0.2642 S13: -0.0755 REMARK 3 S21: -0.1665 S22: 0.0637 S23: -0.0820 REMARK 3 S31: 0.1651 S32: 0.0528 S33: -0.0460 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23506 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 5, 30% PEG 6000- FINAL PH REMARK 280 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.28100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.70950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.68950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.70950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.28100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.68950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 401 REMARK 465 ASN A 402 REMARK 465 GLY A 403 REMARK 465 ASN A 404 REMARK 465 GLU A 405 REMARK 465 GLY A 406 REMARK 465 LEU A 407 REMARK 465 ARG A 532 REMARK 465 GLY A 533 REMARK 465 ASP A 534 REMARK 465 ASN A 535 REMARK 465 HIS A 536 REMARK 465 GLN A 537 REMARK 465 SER A 538 REMARK 465 ILE A 539 REMARK 465 LYS A 540 REMARK 465 SER A 541 REMARK 465 GLN A 542 REMARK 465 PRO A 630 REMARK 465 THR A 631 REMARK 465 PHE A 632 REMARK 465 VAL A 633 REMARK 465 LYS A 634 REMARK 465 ASN A 635 REMARK 465 MET A 636 REMARK 465 THR A 637 REMARK 465 ALA A 638 REMARK 465 ASN A 639 REMARK 465 THR A 640 REMARK 465 ILE A 641 REMARK 465 LYS A 642 REMARK 465 LYS A 643 REMARK 465 ASP A 644 REMARK 465 PRO A 645 REMARK 465 THR A 646 REMARK 465 TYR A 647 REMARK 465 TYR A 648 REMARK 465 GLY A 649 REMARK 465 ILE A 650 REMARK 465 ALA A 651 REMARK 465 MET A 652 REMARK 465 HIS A 653 REMARK 465 TYR A 654 REMARK 465 SER A 655 REMARK 465 SER A 656 REMARK 465 ILE A 657 REMARK 465 LEU A 658 REMARK 465 GLU A 659 REMARK 465 ASN A 660 REMARK 465 LEU A 661 REMARK 465 GLU A 662 REMARK 465 ILE A 663 REMARK 465 VAL A 664 REMARK 465 SER A 665 REMARK 465 HIS A 666 REMARK 465 ASN A 667 REMARK 465 GLU A 668 REMARK 465 HIS A 669 REMARK 465 PHE A 670 REMARK 465 GLN A 671 REMARK 465 ASN A 672 REMARK 465 ILE A 673 REMARK 465 LYS A 674 REMARK 465 SER A 675 REMARK 465 HIS A 676 REMARK 465 ILE A 677 REMARK 465 GLN A 678 REMARK 465 THR A 679 REMARK 465 GLU A 680 REMARK 465 PHE A 681 REMARK 465 HIS A 682 REMARK 465 VAL A 683 REMARK 465 THR A 684 REMARK 465 LEU A 685 REMARK 465 GLY A 686 REMARK 465 HIS A 687 REMARK 465 ILE A 688 REMARK 465 ALA A 689 REMARK 465 SER A 690 REMARK 465 SER A 691 REMARK 465 LYS A 692 REMARK 465 GLN A 693 REMARK 465 ASP A 694 REMARK 465 LYS A 695 REMARK 465 ALA A 696 REMARK 465 GLY A 697 REMARK 465 ARG A 698 REMARK 465 VAL A 699 REMARK 465 LYS A 700 REMARK 465 TRP A 701 REMARK 465 LYS A 702 REMARK 465 LYS A 703 REMARK 465 LEU A 704 REMARK 465 VAL A 705 REMARK 465 LYS A 706 REMARK 465 THR A 707 REMARK 465 LEU A 708 REMARK 465 GLY A 709 REMARK 465 LYS A 710 REMARK 465 GLY A 711 REMARK 465 ASP A 712 REMARK 465 PRO A 713 REMARK 465 ASN A 714 REMARK 465 LYS A 715 REMARK 465 PRO A 716 REMARK 465 LYS A 717 REMARK 465 SER A 718 REMARK 465 ALA A 719 REMARK 465 LEU A 720 REMARK 465 LYS A 721 REMARK 465 PHE A 722 REMARK 465 PHE A 723 REMARK 465 ALA A 724 REMARK 465 ASP A 725 REMARK 465 VAL A 726 REMARK 465 LYS A 727 REMARK 465 LEU A 728 REMARK 465 LEU A 729 REMARK 465 GLN A 730 REMARK 465 ILE A 731 REMARK 465 VAL A 732 REMARK 465 ILE A 733 REMARK 465 ASN A 734 REMARK 465 THR A 735 REMARK 465 ASP A 736 REMARK 465 LYS A 737 REMARK 465 LEU A 738 REMARK 465 ALA A 739 REMARK 465 CYS A 740 REMARK 465 ILE A 741 REMARK 465 LYS A 742 REMARK 465 VAL A 743 REMARK 465 GLU A 744 REMARK 465 ILE A 745 REMARK 465 LEU A 746 REMARK 465 LYS A 747 REMARK 465 ILE A 748 REMARK 465 TYR A 749 REMARK 465 ASP A 750 REMARK 465 THR A 751 REMARK 465 ASN A 752 REMARK 465 ASP A 753 REMARK 465 VAL A 754 REMARK 465 LEU A 755 REMARK 465 GLN A 756 REMARK 465 SER A 757 REMARK 465 GLU A 758 REMARK 465 ILE A 759 REMARK 465 GLU A 760 REMARK 465 PRO A 761 REMARK 465 ILE A 762 REMARK 465 ASN A 763 REMARK 465 LYS A 764 REMARK 465 GLN A 765 REMARK 465 LEU A 766 REMARK 465 HIS A 767 REMARK 465 ILE A 768 REMARK 465 THR A 769 REMARK 465 ILE A 770 REMARK 465 GLY A 771 REMARK 465 CYS A 772 REMARK 465 ILE A 773 REMARK 465 PRO A 774 REMARK 465 PRO A 775 REMARK 465 ALA A 776 REMARK 465 THR A 777 REMARK 465 ALA A 778 REMARK 465 VAL A 779 REMARK 465 GLU A 780 REMARK 465 SER A 781 REMARK 465 ASN A 782 REMARK 465 ILE A 783 REMARK 465 THR A 784 REMARK 465 LEU A 785 REMARK 465 GLU A 786 REMARK 465 GLU A 787 REMARK 465 LEU A 788 REMARK 465 TYR A 789 REMARK 465 ASP A 790 REMARK 465 ASN A 791 REMARK 465 PRO A 792 REMARK 465 ASP A 793 REMARK 465 GLU A 794 REMARK 465 GLN A 795 REMARK 465 GLU A 796 REMARK 465 LEU A 797 REMARK 465 LYS A 798 REMARK 465 PRO A 799 REMARK 465 ASP A 800 REMARK 465 GLY A 801 REMARK 465 THR A 802 REMARK 465 TYR A 803 REMARK 465 LYS A 804 REMARK 465 CYS A 805 REMARK 465 GLY A 806 REMARK 465 ASP A 807 REMARK 465 ASP A 808 REMARK 465 THR A 809 REMARK 465 LEU A 810 REMARK 465 HIS A 811 REMARK 465 VAL A 812 REMARK 465 PHE A 813 REMARK 465 ASN A 814 REMARK 465 PHE A 815 REMARK 465 ASP A 816 REMARK 465 ASN A 817 REMARK 465 PRO A 818 REMARK 465 ASP A 819 REMARK 465 LEU A 820 REMARK 465 LYS A 821 REMARK 465 LEU A 822 REMARK 465 PHE A 823 REMARK 465 SER A 824 REMARK 465 GLN A 825 REMARK 465 GLN A 826 REMARK 465 LEU A 827 REMARK 465 PHE A 828 REMARK 465 VAL A 829 REMARK 465 ALA A 830 REMARK 465 TYR A 831 REMARK 465 GLN A 832 REMARK 465 PRO A 833 REMARK 465 THR A 834 REMARK 465 PHE A 835 REMARK 465 VAL A 836 REMARK 465 LYS A 837 REMARK 465 ASN A 838 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1154 O HOH A 1157 1.82 REMARK 500 O HOH A 1136 O HOH A 1143 1.90 REMARK 500 O HOH A 1015 O HOH A 1112 2.09 REMARK 500 OD2 ASP A 467 O HOH A 1001 2.13 REMARK 500 O HOH A 1001 O HOH A 1140 2.13 REMARK 500 OG1 THR A 410 O HOH A 1002 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1145 O HOH A 1148 3447 2.01 REMARK 500 O HOH A 1078 O HOH A 1130 4557 2.06 REMARK 500 O HOH A 1118 O HOH A 1151 1565 2.09 REMARK 500 O HOH A 1135 O HOH A 1156 3347 2.11 REMARK 500 O HOH A 1139 O HOH A 1152 3447 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 449 2.98 -62.78 REMARK 500 HIS A 574 148.97 -172.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1157 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 426 OG1 REMARK 620 2 GDP A 901 O1B 84.3 REMARK 620 3 HOH A1022 O 86.6 96.4 REMARK 620 4 HOH A1041 O 178.4 96.1 91.9 REMARK 620 5 HOH A1047 O 93.2 92.8 170.8 88.3 REMARK 620 6 HOH A1119 O 95.7 179.7 83.9 83.8 86.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U32 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE CONFLICTS ARE DUE TO CANDIDA HAVING A SPECIAL GENETIC REMARK 999 CODE IN WHICH THE LEUCINE CUG CODON IS READ AS SERINE. IS IS READ REMARK 999 AS LEU IN THE EXPRESSION SYSTEM. DBREF 6TZM A 401 832 UNP P43075 TRNL_CANAL 401 832 SEQADV 6TZM LEU A 543 UNP P43075 SER 543 CONFLICT SEQADV 6TZM LEU A 587 UNP P43075 SER 587 CONFLICT SEQADV 6TZM PRO A 833 UNP P43075 EXPRESSION TAG SEQADV 6TZM THR A 834 UNP P43075 EXPRESSION TAG SEQADV 6TZM PHE A 835 UNP P43075 EXPRESSION TAG SEQADV 6TZM VAL A 836 UNP P43075 EXPRESSION TAG SEQADV 6TZM LYS A 837 UNP P43075 EXPRESSION TAG SEQADV 6TZM ASN A 838 UNP P43075 EXPRESSION TAG SEQRES 1 A 438 ALA ASN GLY ASN GLU GLY LEU SER THR THR THR LYS TYR SEQRES 2 A 438 ILE PHE VAL PRO ILE ALA THR ILE GLY CYS GLY LYS THR SEQRES 3 A 438 THR VAL PHE ASN THR LEU ASN ASN LEU PHE PRO GLN TRP SEQRES 4 A 438 THR HIS ILE GLN ASN ASP ASN ILE SER LYS LYS ALA LYS SEQRES 5 A 438 LEU LYS ILE CYS ASP LEU THR LEU LEU ALA LEU GLU ASP SEQRES 6 A 438 ASP ASP GLN SER VAL VAL LEU PHE ASP ARG ASN ASN SER SEQRES 7 A 438 ALA SER ARG GLU ARG ARG GLN ILE PHE THR THR ILE ASP SEQRES 8 A 438 GLN LYS ARG ASP GLU HIS LEU ASP ASP THR VAL ASP LEU SEQRES 9 A 438 LYS TYR ILE ALA ILE ASN PHE ILE PRO GLU ASP LEU SER SEQRES 10 A 438 GLU GLU GLU LEU TRP ASP ILE THR TYR ASN ARG VAL ILE SEQRES 11 A 438 GLN ARG GLY ASP ASN HIS GLN SER ILE LYS SER GLN LEU SEQRES 12 A 438 ASP GLU ASN LEU VAL GLU SER VAL MET LYS GLY PHE ILE SEQRES 13 A 438 GLN ARG TYR GLN PRO ILE ASN THR SER ARG SER PRO ASP SEQRES 14 A 438 ASP GLN PHE ASP HIS VAL ILE HIS LEU LYS LEU SER LYS SEQRES 15 A 438 ASP GLU ASN SER LEU LYS SER SER LEU GLU ASN VAL ARG SEQRES 16 A 438 ILE ILE ILE ASP ASP LEU VAL GLN ASN PHE PRO ASP LEU SEQRES 17 A 438 ILE LYS GLU LYS PRO ALA ASP GLU LEU ILE ASN GLU CYS SEQRES 18 A 438 PHE GLN LYS ALA LEU ASP TYR LYS PRO THR PHE VAL LYS SEQRES 19 A 438 ASN MET THR ALA ASN THR ILE LYS LYS ASP PRO THR TYR SEQRES 20 A 438 TYR GLY ILE ALA MET HIS TYR SER SER ILE LEU GLU ASN SEQRES 21 A 438 LEU GLU ILE VAL SER HIS ASN GLU HIS PHE GLN ASN ILE SEQRES 22 A 438 LYS SER HIS ILE GLN THR GLU PHE HIS VAL THR LEU GLY SEQRES 23 A 438 HIS ILE ALA SER SER LYS GLN ASP LYS ALA GLY ARG VAL SEQRES 24 A 438 LYS TRP LYS LYS LEU VAL LYS THR LEU GLY LYS GLY ASP SEQRES 25 A 438 PRO ASN LYS PRO LYS SER ALA LEU LYS PHE PHE ALA ASP SEQRES 26 A 438 VAL LYS LEU LEU GLN ILE VAL ILE ASN THR ASP LYS LEU SEQRES 27 A 438 ALA CYS ILE LYS VAL GLU ILE LEU LYS ILE TYR ASP THR SEQRES 28 A 438 ASN ASP VAL LEU GLN SER GLU ILE GLU PRO ILE ASN LYS SEQRES 29 A 438 GLN LEU HIS ILE THR ILE GLY CYS ILE PRO PRO ALA THR SEQRES 30 A 438 ALA VAL GLU SER ASN ILE THR LEU GLU GLU LEU TYR ASP SEQRES 31 A 438 ASN PRO ASP GLU GLN GLU LEU LYS PRO ASP GLY THR TYR SEQRES 32 A 438 LYS CYS GLY ASP ASP THR LEU HIS VAL PHE ASN PHE ASP SEQRES 33 A 438 ASN PRO ASP LEU LYS LEU PHE SER GLN GLN LEU PHE VAL SEQRES 34 A 438 ALA TYR GLN PRO THR PHE VAL LYS ASN HET GDP A 901 28 HET MG A 902 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *157(H2 O) HELIX 1 AA1 GLY A 424 PHE A 436 1 13 HELIX 2 AA2 ASP A 445 ILE A 447 5 3 HELIX 3 AA3 LYS A 454 LEU A 463 1 10 HELIX 4 AA4 ALA A 479 LEU A 498 1 20 HELIX 5 AA5 SER A 517 GLN A 531 1 15 HELIX 6 AA6 ASP A 544 ARG A 558 1 15 HELIX 7 AA7 PRO A 568 PHE A 572 5 5 HELIX 8 AA8 LYS A 588 PHE A 605 1 18 HELIX 9 AA9 ALA A 614 ASP A 627 1 14 SHEET 1 AA1 5 THR A 440 GLN A 443 0 SHEET 2 AA1 5 VAL A 470 ASP A 474 1 O LEU A 472 N THR A 440 SHEET 3 AA1 5 THR A 410 ILE A 418 1 N PHE A 415 O VAL A 471 SHEET 4 AA1 5 VAL A 502 ASN A 510 1 O ASP A 503 N THR A 410 SHEET 5 AA1 5 HIS A 574 HIS A 577 1 O ILE A 576 N ASN A 510 LINK OG1 THR A 426 MG MG A 902 1555 1555 2.08 LINK O1B GDP A 901 MG MG A 902 1555 1555 2.17 LINK MG MG A 902 O HOH A1022 1555 1555 2.24 LINK MG MG A 902 O HOH A1041 1555 1555 2.12 LINK MG MG A 902 O HOH A1047 1555 1555 2.20 LINK MG MG A 902 O HOH A1119 1555 1555 2.21 CISPEP 1 SER A 567 PRO A 568 0 1.09 SITE 1 AC1 23 GLY A 422 CYS A 423 GLY A 424 LYS A 425 SITE 2 AC1 23 THR A 426 THR A 427 ARG A 528 ASP A 583 SITE 3 AC1 23 LYS A 588 SER A 589 SER A 590 LEU A 626 SITE 4 AC1 23 MG A 902 HOH A1012 HOH A1040 HOH A1041 SITE 5 AC1 23 HOH A1042 HOH A1047 HOH A1052 HOH A1055 SITE 6 AC1 23 HOH A1070 HOH A1090 HOH A1093 SITE 1 AC2 6 THR A 426 GDP A 901 HOH A1022 HOH A1041 SITE 2 AC2 6 HOH A1047 HOH A1119 CRYST1 50.562 55.379 81.419 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012282 0.00000