HEADER TRANSFERASE 12-AUG-19 6TZO TITLE CRYSTAL STRUCTURE OF FUNGAL RNA KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: LIG1, RLG1, TRL1, CAALFM_C702060WA, CAJ7.0238, CAO19.13864, SOURCE 8 CAO19.6511; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RNA LIGASE, RNA REPAIR, POLYNUCLEOTIDE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHUMAN,Y.GOLDGUR,A.BANERJEE REVDAT 5 11-OCT-23 6TZO 1 REMARK REVDAT 4 01-JAN-20 6TZO 1 REMARK REVDAT 3 25-DEC-19 6TZO 1 JRNL REVDAT 2 27-NOV-19 6TZO 1 JRNL REVDAT 1 06-NOV-19 6TZO 0 JRNL AUTH A.BANERJEE,Y.GOLDGUR,B.SCHWER,S.SHUMAN JRNL TITL ATOMIC STRUCTURES OF THE RNA END-HEALING 5'-OH KINASE AND JRNL TITL 2 2',3'-CYCLIC PHOSPHODIESTERASE DOMAINS OF FUNGAL TRNA JRNL TITL 3 LIGASE: CONFORMATIONAL SWITCHES IN THE KINASE UPON BINDING JRNL TITL 4 OF THE GTP PHOSPHATE DONOR. JRNL REF NUCLEIC ACIDS RES. V. 47 11826 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31722405 JRNL DOI 10.1093/NAR/GKZ1049 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 25803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.750 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5000 - 4.0934 0.99 1872 157 0.1535 0.1639 REMARK 3 2 4.0934 - 3.2493 1.00 1782 150 0.1653 0.1812 REMARK 3 3 3.2493 - 2.8387 1.00 1754 148 0.1812 0.2276 REMARK 3 4 2.8387 - 2.5791 0.99 1748 146 0.1947 0.1964 REMARK 3 5 2.5791 - 2.3943 1.00 1730 146 0.1925 0.2434 REMARK 3 6 2.3943 - 2.2531 1.00 1737 146 0.1846 0.2398 REMARK 3 7 2.2531 - 2.1403 1.00 1742 146 0.1965 0.2534 REMARK 3 8 2.1403 - 2.0471 1.00 1719 145 0.1872 0.2552 REMARK 3 9 2.0471 - 1.9683 1.00 1699 142 0.1991 0.2291 REMARK 3 10 1.9683 - 1.9004 0.99 1722 145 0.1954 0.2492 REMARK 3 11 1.9004 - 1.8410 1.00 1715 144 0.2121 0.2352 REMARK 3 12 1.8410 - 1.7883 0.98 1665 139 0.2230 0.2729 REMARK 3 13 1.7883 - 1.7413 0.91 1574 133 0.2551 0.3002 REMARK 3 14 1.7413 - 1.6990 0.78 1344 113 0.2640 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.9987 9.1647 93.2324 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.1744 REMARK 3 T33: 0.1296 T12: -0.0055 REMARK 3 T13: 0.0014 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.8617 L22: 1.9810 REMARK 3 L33: 2.8613 L12: 0.8343 REMARK 3 L13: 0.1140 L23: -0.7910 REMARK 3 S TENSOR REMARK 3 S11: -0.0953 S12: 0.0779 S13: 0.0272 REMARK 3 S21: -0.0399 S22: 0.1303 S23: 0.1212 REMARK 3 S31: 0.0991 S32: -0.3634 S33: 0.0126 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 480 THROUGH 517 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.6737 5.9968 103.4539 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.2074 REMARK 3 T33: 0.1316 T12: 0.0202 REMARK 3 T13: -0.0373 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 3.4635 L22: 4.2023 REMARK 3 L33: 0.8948 L12: 2.7425 REMARK 3 L13: -0.8608 L23: -0.6005 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: -0.2619 S13: -0.0967 REMARK 3 S21: 0.1565 S22: -0.0057 S23: -0.0235 REMARK 3 S31: 0.0888 S32: -0.0429 S33: 0.0420 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 518 THROUGH 532 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0943 25.7867 94.6850 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.1800 REMARK 3 T33: 0.4038 T12: -0.0626 REMARK 3 T13: -0.0325 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 8.2910 L22: 2.0969 REMARK 3 L33: 8.4121 L12: -0.5499 REMARK 3 L13: 3.6189 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.3856 S12: 0.2374 S13: 0.9504 REMARK 3 S21: -0.2190 S22: 0.0181 S23: -0.5247 REMARK 3 S31: -0.5706 S32: 0.2964 S33: 0.2711 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 533 THROUGH 557 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.8121 29.6341 96.0497 REMARK 3 T TENSOR REMARK 3 T11: 0.3767 T22: 0.3355 REMARK 3 T33: 0.4898 T12: 0.0432 REMARK 3 T13: -0.0337 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 6.6675 L22: 9.2274 REMARK 3 L33: 2.1624 L12: 0.3581 REMARK 3 L13: -1.6947 L23: 0.6346 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.6372 S13: 1.0921 REMARK 3 S21: -0.8188 S22: -0.0232 S23: -0.1447 REMARK 3 S31: -0.6791 S32: -0.4802 S33: 0.0732 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 558 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8878 8.0954 97.6254 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.1860 REMARK 3 T33: 0.2123 T12: 0.0353 REMARK 3 T13: -0.0428 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.4195 L22: 1.4044 REMARK 3 L33: 1.5084 L12: -0.2999 REMARK 3 L13: -0.6146 L23: -0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: -0.0680 S13: -0.1760 REMARK 3 S21: 0.1430 S22: 0.0448 S23: -0.2153 REMARK 3 S31: 0.0566 S32: 0.0657 S33: 0.0039 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 630 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9828 6.0954 81.6944 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.3907 REMARK 3 T33: 0.2356 T12: -0.0293 REMARK 3 T13: 0.0573 T23: -0.1198 REMARK 3 L TENSOR REMARK 3 L11: 3.9041 L22: 6.4945 REMARK 3 L33: 6.6386 L12: 2.7220 REMARK 3 L13: -1.6342 L23: -3.3022 REMARK 3 S TENSOR REMARK 3 S11: -0.3477 S12: 0.8126 S13: -0.2159 REMARK 3 S21: -0.6349 S22: 0.3014 S23: -0.0288 REMARK 3 S31: 0.4034 S32: -0.1713 S33: 0.0419 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97170 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5U32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M NAH2PO4, 20% PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.07050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.25050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.21350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.25050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.07050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.21350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 401 REMARK 465 ASN A 402 REMARK 465 GLY A 403 REMARK 465 ASN A 404 REMARK 465 GLU A 405 REMARK 465 GLY A 406 REMARK 465 THR A 631 REMARK 465 PHE A 632 REMARK 465 VAL A 633 REMARK 465 LYS A 634 REMARK 465 ASN A 635 REMARK 465 MET A 636 REMARK 465 THR A 637 REMARK 465 ALA A 638 REMARK 465 ASN A 639 REMARK 465 THR A 640 REMARK 465 ILE A 641 REMARK 465 LYS A 642 REMARK 465 LYS A 643 REMARK 465 ASP A 644 REMARK 465 PRO A 645 REMARK 465 THR A 646 REMARK 465 TYR A 647 REMARK 465 TYR A 648 REMARK 465 GLY A 649 REMARK 465 ILE A 650 REMARK 465 ALA A 651 REMARK 465 MET A 652 REMARK 465 HIS A 653 REMARK 465 TYR A 654 REMARK 465 SER A 655 REMARK 465 SER A 656 REMARK 465 ILE A 657 REMARK 465 LEU A 658 REMARK 465 GLU A 659 REMARK 465 ASN A 660 REMARK 465 LEU A 661 REMARK 465 GLU A 662 REMARK 465 ILE A 663 REMARK 465 VAL A 664 REMARK 465 SER A 665 REMARK 465 HIS A 666 REMARK 465 ASN A 667 REMARK 465 GLU A 668 REMARK 465 HIS A 669 REMARK 465 PHE A 670 REMARK 465 GLN A 671 REMARK 465 ASN A 672 REMARK 465 ILE A 673 REMARK 465 LYS A 674 REMARK 465 SER A 675 REMARK 465 HIS A 676 REMARK 465 ILE A 677 REMARK 465 GLN A 678 REMARK 465 THR A 679 REMARK 465 GLU A 680 REMARK 465 PHE A 681 REMARK 465 HIS A 682 REMARK 465 VAL A 683 REMARK 465 THR A 684 REMARK 465 LEU A 685 REMARK 465 GLY A 686 REMARK 465 HIS A 687 REMARK 465 ILE A 688 REMARK 465 ALA A 689 REMARK 465 SER A 690 REMARK 465 SER A 691 REMARK 465 LYS A 692 REMARK 465 GLN A 693 REMARK 465 ASP A 694 REMARK 465 LYS A 695 REMARK 465 ALA A 696 REMARK 465 GLY A 697 REMARK 465 ARG A 698 REMARK 465 VAL A 699 REMARK 465 LYS A 700 REMARK 465 TRP A 701 REMARK 465 LYS A 702 REMARK 465 LYS A 703 REMARK 465 LEU A 704 REMARK 465 VAL A 705 REMARK 465 LYS A 706 REMARK 465 THR A 707 REMARK 465 LEU A 708 REMARK 465 GLY A 709 REMARK 465 LYS A 710 REMARK 465 GLY A 711 REMARK 465 ASP A 712 REMARK 465 PRO A 713 REMARK 465 ASN A 714 REMARK 465 LYS A 715 REMARK 465 PRO A 716 REMARK 465 LYS A 717 REMARK 465 SER A 718 REMARK 465 ALA A 719 REMARK 465 LEU A 720 REMARK 465 LYS A 721 REMARK 465 PHE A 722 REMARK 465 PHE A 723 REMARK 465 ALA A 724 REMARK 465 ASP A 725 REMARK 465 VAL A 726 REMARK 465 LYS A 727 REMARK 465 LEU A 728 REMARK 465 LEU A 729 REMARK 465 GLN A 730 REMARK 465 ILE A 731 REMARK 465 VAL A 732 REMARK 465 ILE A 733 REMARK 465 ASN A 734 REMARK 465 THR A 735 REMARK 465 ASP A 736 REMARK 465 LYS A 737 REMARK 465 LEU A 738 REMARK 465 ALA A 739 REMARK 465 CYS A 740 REMARK 465 ILE A 741 REMARK 465 LYS A 742 REMARK 465 VAL A 743 REMARK 465 GLU A 744 REMARK 465 ILE A 745 REMARK 465 LEU A 746 REMARK 465 LYS A 747 REMARK 465 ILE A 748 REMARK 465 TYR A 749 REMARK 465 ASP A 750 REMARK 465 THR A 751 REMARK 465 ASN A 752 REMARK 465 ASP A 753 REMARK 465 VAL A 754 REMARK 465 LEU A 755 REMARK 465 GLN A 756 REMARK 465 SER A 757 REMARK 465 GLU A 758 REMARK 465 ILE A 759 REMARK 465 GLU A 760 REMARK 465 PRO A 761 REMARK 465 ILE A 762 REMARK 465 ASN A 763 REMARK 465 LYS A 764 REMARK 465 GLN A 765 REMARK 465 LEU A 766 REMARK 465 HIS A 767 REMARK 465 ILE A 768 REMARK 465 THR A 769 REMARK 465 ILE A 770 REMARK 465 GLY A 771 REMARK 465 CYS A 772 REMARK 465 ILE A 773 REMARK 465 PRO A 774 REMARK 465 PRO A 775 REMARK 465 ALA A 776 REMARK 465 THR A 777 REMARK 465 ALA A 778 REMARK 465 VAL A 779 REMARK 465 GLU A 780 REMARK 465 SER A 781 REMARK 465 ASN A 782 REMARK 465 ILE A 783 REMARK 465 THR A 784 REMARK 465 LEU A 785 REMARK 465 GLU A 786 REMARK 465 GLU A 787 REMARK 465 LEU A 788 REMARK 465 TYR A 789 REMARK 465 ASP A 790 REMARK 465 ASN A 791 REMARK 465 PRO A 792 REMARK 465 ASP A 793 REMARK 465 GLU A 794 REMARK 465 GLN A 795 REMARK 465 GLU A 796 REMARK 465 LEU A 797 REMARK 465 LYS A 798 REMARK 465 PRO A 799 REMARK 465 ASP A 800 REMARK 465 GLY A 801 REMARK 465 THR A 802 REMARK 465 TYR A 803 REMARK 465 LYS A 804 REMARK 465 CYS A 805 REMARK 465 GLY A 806 REMARK 465 ASP A 807 REMARK 465 ASP A 808 REMARK 465 THR A 809 REMARK 465 LEU A 810 REMARK 465 HIS A 811 REMARK 465 VAL A 812 REMARK 465 PHE A 813 REMARK 465 ASN A 814 REMARK 465 PHE A 815 REMARK 465 ASP A 816 REMARK 465 ASN A 817 REMARK 465 PRO A 818 REMARK 465 ASP A 819 REMARK 465 LEU A 820 REMARK 465 LYS A 821 REMARK 465 LEU A 822 REMARK 465 PHE A 823 REMARK 465 SER A 824 REMARK 465 GLN A 825 REMARK 465 GLN A 826 REMARK 465 LEU A 827 REMARK 465 PHE A 828 REMARK 465 VAL A 829 REMARK 465 ALA A 830 REMARK 465 TYR A 831 REMARK 465 GLN A 832 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 PO4 A 902 O HOH A 1001 1.96 REMARK 500 NE2 GLN A 571 O HOH A 1002 1.97 REMARK 500 O HOH A 1157 O HOH A 1169 1.98 REMARK 500 OE1 GLN A 557 O HOH A 1003 1.98 REMARK 500 O HOH A 1128 O HOH A 1169 2.00 REMARK 500 O HOH A 1137 O HOH A 1166 2.02 REMARK 500 OH TYR A 413 O HOH A 1004 2.17 REMARK 500 OE1 GLU A 616 O HOH A 1005 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 452 OE1 GLU A 620 4457 1.43 REMARK 500 O HOH A 1141 O HOH A 1167 3457 2.04 REMARK 500 O HOH A 1153 O HOH A 1167 3457 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 408 -37.88 -154.81 REMARK 500 LEU A 543 -71.73 -73.89 REMARK 500 HIS A 574 144.79 -170.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DGI A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 902 DBREF 6TZO A 401 832 UNP P43075 TRNL_CANAL 401 832 SEQADV 6TZO ASN A 445 UNP P43075 ASP 445 ENGINEERED MUTATION SEQADV 6TZO LEU A 543 UNP P43075 SER 543 CONFLICT SEQADV 6TZO LEU A 587 UNP P43075 SER 587 CONFLICT SEQRES 1 A 432 ALA ASN GLY ASN GLU GLY LEU SER THR THR THR LYS TYR SEQRES 2 A 432 ILE PHE VAL PRO ILE ALA THR ILE GLY CYS GLY LYS THR SEQRES 3 A 432 THR VAL PHE ASN THR LEU ASN ASN LEU PHE PRO GLN TRP SEQRES 4 A 432 THR HIS ILE GLN ASN ASN ASN ILE SER LYS LYS ALA LYS SEQRES 5 A 432 LEU LYS ILE CYS ASP LEU THR LEU LEU ALA LEU GLU ASP SEQRES 6 A 432 ASP ASP GLN SER VAL VAL LEU PHE ASP ARG ASN ASN SER SEQRES 7 A 432 ALA SER ARG GLU ARG ARG GLN ILE PHE THR THR ILE ASP SEQRES 8 A 432 GLN LYS ARG ASP GLU HIS LEU ASP ASP THR VAL ASP LEU SEQRES 9 A 432 LYS TYR ILE ALA ILE ASN PHE ILE PRO GLU ASP LEU SER SEQRES 10 A 432 GLU GLU GLU LEU TRP ASP ILE THR TYR ASN ARG VAL ILE SEQRES 11 A 432 GLN ARG GLY ASP ASN HIS GLN SER ILE LYS SER GLN LEU SEQRES 12 A 432 ASP GLU ASN LEU VAL GLU SER VAL MET LYS GLY PHE ILE SEQRES 13 A 432 GLN ARG TYR GLN PRO ILE ASN THR SER ARG SER PRO ASP SEQRES 14 A 432 ASP GLN PHE ASP HIS VAL ILE HIS LEU LYS LEU SER LYS SEQRES 15 A 432 ASP GLU ASN SER LEU LYS SER SER LEU GLU ASN VAL ARG SEQRES 16 A 432 ILE ILE ILE ASP ASP LEU VAL GLN ASN PHE PRO ASP LEU SEQRES 17 A 432 ILE LYS GLU LYS PRO ALA ASP GLU LEU ILE ASN GLU CYS SEQRES 18 A 432 PHE GLN LYS ALA LEU ASP TYR LYS PRO THR PHE VAL LYS SEQRES 19 A 432 ASN MET THR ALA ASN THR ILE LYS LYS ASP PRO THR TYR SEQRES 20 A 432 TYR GLY ILE ALA MET HIS TYR SER SER ILE LEU GLU ASN SEQRES 21 A 432 LEU GLU ILE VAL SER HIS ASN GLU HIS PHE GLN ASN ILE SEQRES 22 A 432 LYS SER HIS ILE GLN THR GLU PHE HIS VAL THR LEU GLY SEQRES 23 A 432 HIS ILE ALA SER SER LYS GLN ASP LYS ALA GLY ARG VAL SEQRES 24 A 432 LYS TRP LYS LYS LEU VAL LYS THR LEU GLY LYS GLY ASP SEQRES 25 A 432 PRO ASN LYS PRO LYS SER ALA LEU LYS PHE PHE ALA ASP SEQRES 26 A 432 VAL LYS LEU LEU GLN ILE VAL ILE ASN THR ASP LYS LEU SEQRES 27 A 432 ALA CYS ILE LYS VAL GLU ILE LEU LYS ILE TYR ASP THR SEQRES 28 A 432 ASN ASP VAL LEU GLN SER GLU ILE GLU PRO ILE ASN LYS SEQRES 29 A 432 GLN LEU HIS ILE THR ILE GLY CYS ILE PRO PRO ALA THR SEQRES 30 A 432 ALA VAL GLU SER ASN ILE THR LEU GLU GLU LEU TYR ASP SEQRES 31 A 432 ASN PRO ASP GLU GLN GLU LEU LYS PRO ASP GLY THR TYR SEQRES 32 A 432 LYS CYS GLY ASP ASP THR LEU HIS VAL PHE ASN PHE ASP SEQRES 33 A 432 ASN PRO ASP LEU LYS LEU PHE SER GLN GLN LEU PHE VAL SEQRES 34 A 432 ALA TYR GLN HET DGI A 901 27 HET PO4 A 902 5 HETNAM DGI 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 2 DGI C10 H15 N5 O10 P2 FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *170(H2 O) HELIX 1 AA1 GLY A 424 PHE A 436 1 13 HELIX 2 AA2 ASN A 445 ILE A 447 5 3 HELIX 3 AA3 LYS A 454 ALA A 462 1 9 HELIX 4 AA4 ALA A 479 ARG A 494 1 16 HELIX 5 AA5 ASP A 495 HIS A 497 5 3 HELIX 6 AA6 SER A 517 GLY A 533 1 17 HELIX 7 AA7 ASP A 544 ARG A 558 1 15 HELIX 8 AA8 PRO A 568 PHE A 572 5 5 HELIX 9 AA9 LYS A 588 PHE A 605 1 18 HELIX 10 AB1 ALA A 614 ASP A 627 1 14 SHEET 1 AA1 5 THR A 440 GLN A 443 0 SHEET 2 AA1 5 VAL A 470 ASP A 474 1 O LEU A 472 N THR A 440 SHEET 3 AA1 5 THR A 410 ILE A 418 1 N PHE A 415 O VAL A 471 SHEET 4 AA1 5 VAL A 502 ASN A 510 1 O ASP A 503 N LYS A 412 SHEET 5 AA1 5 HIS A 574 HIS A 577 1 O ILE A 576 N ALA A 508 CISPEP 1 SER A 567 PRO A 568 0 3.05 SITE 1 AC1 19 GLY A 422 CYS A 423 GLY A 424 LYS A 425 SITE 2 AC1 19 THR A 426 THR A 427 ARG A 528 ARG A 532 SITE 3 AC1 19 GLY A 533 ASP A 534 ASP A 583 LYS A 588 SITE 4 AC1 19 SER A 589 SER A 590 LYS A 629 HOH A1028 SITE 5 AC1 19 HOH A1032 HOH A1044 HOH A1093 SITE 1 AC2 10 ASN A 444 ASN A 445 ASP A 474 ARG A 475 SITE 2 AC2 10 ASN A 476 HIS A 536 HOH A1001 HOH A1028 SITE 3 AC2 10 HOH A1032 HOH A1069 CRYST1 50.141 56.427 82.501 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012121 0.00000