HEADER TRANSFERASE 13-AUG-19 6U03 TITLE CRYSTAL STRUCTURE OF FUNGAL RNA KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: LIG1, RLG1, TRL1, CAALFM_C702060WA, CAJ7.0238, CAO19.13864, SOURCE 8 CAO19.6511; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RNA LIGASE, RNA REPAIR, POLYNUCLEOTIDE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHUMAN,Y.GOLDGUR,A.BANERJEE REVDAT 5 11-OCT-23 6U03 1 LINK REVDAT 4 01-JAN-20 6U03 1 REMARK REVDAT 3 25-DEC-19 6U03 1 JRNL REVDAT 2 27-NOV-19 6U03 1 JRNL REVDAT 1 06-NOV-19 6U03 0 JRNL AUTH A.BANERJEE,Y.GOLDGUR,B.SCHWER,S.SHUMAN JRNL TITL ATOMIC STRUCTURES OF THE RNA END-HEALING 5'-OH KINASE AND JRNL TITL 2 2',3'-CYCLIC PHOSPHODIESTERASE DOMAINS OF FUNGAL TRNA JRNL TITL 3 LIGASE: CONFORMATIONAL SWITCHES IN THE KINASE UPON BINDING JRNL TITL 4 OF THE GTP PHOSPHATE DONOR. JRNL REF NUCLEIC ACIDS RES. V. 47 11826 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31722405 JRNL DOI 10.1093/NAR/GKZ1049 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 20059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0200 - 4.4539 1.00 1413 156 0.1589 0.1982 REMARK 3 2 4.4539 - 3.5356 1.00 1329 148 0.1384 0.1804 REMARK 3 3 3.5356 - 3.0888 1.00 1316 145 0.1706 0.1989 REMARK 3 4 3.0888 - 2.8064 0.99 1301 144 0.1837 0.2260 REMARK 3 5 2.8064 - 2.6053 1.00 1292 144 0.1828 0.2529 REMARK 3 6 2.6053 - 2.4517 1.00 1311 145 0.1817 0.2357 REMARK 3 7 2.4517 - 2.3289 1.00 1285 142 0.1752 0.2297 REMARK 3 8 2.3289 - 2.2276 1.00 1278 142 0.1749 0.2181 REMARK 3 9 2.2276 - 2.1418 1.00 1269 140 0.1797 0.2425 REMARK 3 10 2.1418 - 2.0679 0.99 1285 143 0.1721 0.2179 REMARK 3 11 2.0679 - 2.0032 1.00 1270 140 0.1898 0.2279 REMARK 3 12 2.0032 - 1.9460 0.99 1274 141 0.1964 0.2328 REMARK 3 13 1.9460 - 1.8947 0.98 1271 141 0.2048 0.2639 REMARK 3 14 1.8947 - 1.8485 0.92 1165 129 0.2146 0.2843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 407 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.7139 6.7921 91.5217 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.1833 REMARK 3 T33: 0.1719 T12: -0.0181 REMARK 3 T13: 0.0201 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.8566 L22: 0.2009 REMARK 3 L33: 0.8327 L12: -0.2504 REMARK 3 L13: 0.0967 L23: -0.4368 REMARK 3 S TENSOR REMARK 3 S11: -0.1435 S12: 0.0547 S13: -0.0304 REMARK 3 S21: -0.0335 S22: 0.1258 S23: 0.0268 REMARK 3 S31: 0.1027 S32: -0.0594 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.8832 13.2763 90.9681 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.2456 REMARK 3 T33: 0.2656 T12: 0.0599 REMARK 3 T13: -0.0311 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 0.3974 L22: 0.4396 REMARK 3 L33: 0.2203 L12: 0.0958 REMARK 3 L13: -0.0755 L23: -0.2996 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: 0.1881 S13: 0.1282 REMARK 3 S21: -0.1698 S22: -0.0517 S23: 0.3616 REMARK 3 S31: -0.2303 S32: -0.3069 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 455 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.1024 7.1228 94.3776 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.2618 REMARK 3 T33: 0.1807 T12: -0.0359 REMARK 3 T13: -0.0103 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.5833 L22: 0.5974 REMARK 3 L33: 0.8464 L12: 0.1173 REMARK 3 L13: -0.5371 L23: -0.6656 REMARK 3 S TENSOR REMARK 3 S11: -0.0819 S12: 0.0439 S13: -0.0023 REMARK 3 S21: -0.1191 S22: 0.1186 S23: 0.1096 REMARK 3 S31: 0.1082 S32: -0.3459 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 480 THROUGH 497 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.1549 7.3454 105.2584 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.2261 REMARK 3 T33: 0.2075 T12: 0.0304 REMARK 3 T13: 0.0307 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.3659 L22: 0.5271 REMARK 3 L33: 0.1572 L12: -0.3960 REMARK 3 L13: -0.1698 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: -0.2006 S13: 0.0497 REMARK 3 S21: -0.0177 S22: -0.1439 S23: 0.3724 REMARK 3 S31: 0.1793 S32: 0.0146 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 498 THROUGH 517 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2206 4.3626 99.9281 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.2011 REMARK 3 T33: 0.1690 T12: -0.0271 REMARK 3 T13: 0.0013 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4207 L22: 0.7748 REMARK 3 L33: 0.1507 L12: 0.1385 REMARK 3 L13: 0.0864 L23: -0.3865 REMARK 3 S TENSOR REMARK 3 S11: -0.2316 S12: -0.3066 S13: -0.4094 REMARK 3 S21: -0.1431 S22: 0.0836 S23: -0.5206 REMARK 3 S31: 0.1377 S32: -0.0138 S33: -0.0302 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 518 THROUGH 541 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8834 26.2714 93.7963 REMARK 3 T TENSOR REMARK 3 T11: 0.3169 T22: 0.2187 REMARK 3 T33: 0.2889 T12: -0.0544 REMARK 3 T13: -0.0494 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.3142 L22: 0.4011 REMARK 3 L33: 0.2647 L12: -0.2340 REMARK 3 L13: -0.3024 L23: 0.0840 REMARK 3 S TENSOR REMARK 3 S11: -0.2928 S12: 0.0905 S13: 0.4664 REMARK 3 S21: -0.2450 S22: 0.0671 S23: -0.3637 REMARK 3 S31: -0.4653 S32: 0.1753 S33: -0.0011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 542 THROUGH 568 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3332 23.3241 102.7036 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.2001 REMARK 3 T33: 0.3099 T12: -0.0050 REMARK 3 T13: -0.0236 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.0102 L22: 0.4511 REMARK 3 L33: 0.7521 L12: -0.3154 REMARK 3 L13: -0.1008 L23: 0.6232 REMARK 3 S TENSOR REMARK 3 S11: 0.0443 S12: -0.2656 S13: 0.3301 REMARK 3 S21: -0.1587 S22: 0.0345 S23: -0.2064 REMARK 3 S31: -0.1015 S32: 0.0458 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 569 THROUGH 588 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9994 9.2821 95.5739 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.2035 REMARK 3 T33: 0.2400 T12: 0.0039 REMARK 3 T13: 0.0027 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4261 L22: 0.7467 REMARK 3 L33: 0.2087 L12: -0.4080 REMARK 3 L13: 0.4032 L23: -0.3394 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: 0.0468 S13: 0.1039 REMARK 3 S21: 0.0620 S22: 0.0602 S23: 0.0366 REMARK 3 S31: 0.0119 S32: 0.0843 S33: -0.0018 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 589 THROUGH 614 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2520 -0.1294 88.1106 REMARK 3 T TENSOR REMARK 3 T11: 0.2613 T22: 0.2285 REMARK 3 T33: 0.2110 T12: 0.0140 REMARK 3 T13: 0.0189 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 0.5497 L22: 0.0725 REMARK 3 L33: 0.3794 L12: 0.1252 REMARK 3 L13: -0.4532 L23: -0.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: 0.1798 S13: -0.2748 REMARK 3 S21: -0.1709 S22: -0.0440 S23: -0.2803 REMARK 3 S31: 0.3652 S32: 0.0693 S33: -0.0056 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 615 THROUGH 630 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.9312 12.3007 78.1468 REMARK 3 T TENSOR REMARK 3 T11: 0.2380 T22: 0.3526 REMARK 3 T33: 0.2195 T12: -0.0047 REMARK 3 T13: 0.0473 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.7273 L22: 0.6518 REMARK 3 L33: 0.4508 L12: 0.7053 REMARK 3 L13: -0.0856 L23: 0.0574 REMARK 3 S TENSOR REMARK 3 S11: 0.2006 S12: 1.0294 S13: 0.2799 REMARK 3 S21: -0.5414 S22: -0.2048 S23: -0.0056 REMARK 3 S31: -0.1899 S32: -0.1167 S33: -0.0025 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20105 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.849 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5U32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M NAH2PO4, 20%PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.11350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.89750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.83350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.89750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.11350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.83350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 401 REMARK 465 ASN A 402 REMARK 465 GLY A 403 REMARK 465 ASN A 404 REMARK 465 GLU A 405 REMARK 465 GLY A 406 REMARK 465 GLY A 533 REMARK 465 ASP A 534 REMARK 465 ASN A 535 REMARK 465 HIS A 536 REMARK 465 GLN A 537 REMARK 465 SER A 538 REMARK 465 ILE A 539 REMARK 465 LYS A 540 REMARK 465 THR A 631 REMARK 465 PHE A 632 REMARK 465 VAL A 633 REMARK 465 LYS A 634 REMARK 465 ASN A 635 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 483 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 408 -32.22 -153.30 REMARK 500 LYS A 610 -76.97 -68.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 426 OG1 REMARK 620 2 GTP A 701 O1G 172.6 REMARK 620 3 GTP A 701 O1B 88.8 90.7 REMARK 620 4 HOH A 820 O 92.0 80.5 87.5 REMARK 620 5 HOH A 827 O 87.5 99.8 101.5 171.0 REMARK 620 6 HOH A 894 O 92.2 87.0 169.9 82.5 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 702 DBREF 6U03 A 401 635 UNP P43075 TRNL_CANAL 401 635 SEQADV 6U03 ASN A 445 UNP P43075 ASP 445 ENGINEERED MUTATION SEQADV 6U03 LEU A 543 UNP P43075 SER 543 CONFLICT SEQADV 6U03 LEU A 587 UNP P43075 SER 587 CONFLICT SEQRES 1 A 235 ALA ASN GLY ASN GLU GLY LEU SER THR THR THR LYS TYR SEQRES 2 A 235 ILE PHE VAL PRO ILE ALA THR ILE GLY CYS GLY LYS THR SEQRES 3 A 235 THR VAL PHE ASN THR LEU ASN ASN LEU PHE PRO GLN TRP SEQRES 4 A 235 THR HIS ILE GLN ASN ASN ASN ILE SER LYS LYS ALA LYS SEQRES 5 A 235 LEU LYS ILE CYS ASP LEU THR LEU LEU ALA LEU GLU ASP SEQRES 6 A 235 ASP ASP GLN SER VAL VAL LEU PHE ASP ARG ASN ASN SER SEQRES 7 A 235 ALA SER ARG GLU ARG ARG GLN ILE PHE THR THR ILE ASP SEQRES 8 A 235 GLN LYS ARG ASP GLU HIS LEU ASP ASP THR VAL ASP LEU SEQRES 9 A 235 LYS TYR ILE ALA ILE ASN PHE ILE PRO GLU ASP LEU SER SEQRES 10 A 235 GLU GLU GLU LEU TRP ASP ILE THR TYR ASN ARG VAL ILE SEQRES 11 A 235 GLN ARG GLY ASP ASN HIS GLN SER ILE LYS SER GLN LEU SEQRES 12 A 235 ASP GLU ASN LEU VAL GLU SER VAL MET LYS GLY PHE ILE SEQRES 13 A 235 GLN ARG TYR GLN PRO ILE ASN THR SER ARG SER PRO ASP SEQRES 14 A 235 ASP GLN PHE ASP HIS VAL ILE HIS LEU LYS LEU SER LYS SEQRES 15 A 235 ASP GLU ASN SER LEU LYS SER SER LEU GLU ASN VAL ARG SEQRES 16 A 235 ILE ILE ILE ASP ASP LEU VAL GLN ASN PHE PRO ASP LEU SEQRES 17 A 235 ILE LYS GLU LYS PRO ALA ASP GLU LEU ILE ASN GLU CYS SEQRES 18 A 235 PHE GLN LYS ALA LEU ASP TYR LYS PRO THR PHE VAL LYS SEQRES 19 A 235 ASN HET GTP A 701 32 HET MG A 702 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *158(H2 O) HELIX 1 AA1 GLY A 424 PHE A 436 1 13 HELIX 2 AA2 ASN A 445 ILE A 447 5 3 HELIX 3 AA3 LYS A 454 ALA A 462 1 9 HELIX 4 AA4 ALA A 479 LEU A 498 1 20 HELIX 5 AA5 SER A 517 GLN A 531 1 15 HELIX 6 AA6 GLN A 542 ARG A 558 1 17 HELIX 7 AA7 PRO A 568 PHE A 572 5 5 HELIX 8 AA8 LYS A 588 PHE A 605 1 18 HELIX 9 AA9 ALA A 614 ASP A 627 1 14 SHEET 1 AA1 5 THR A 440 GLN A 443 0 SHEET 2 AA1 5 VAL A 470 ASP A 474 1 O LEU A 472 N THR A 440 SHEET 3 AA1 5 THR A 410 ILE A 418 1 N PHE A 415 O VAL A 471 SHEET 4 AA1 5 VAL A 502 ASN A 510 1 O ASP A 503 N THR A 410 SHEET 5 AA1 5 HIS A 574 HIS A 577 1 O ILE A 576 N ALA A 508 LINK OG1 THR A 426 MG MG A 702 1555 1555 1.99 LINK O1G GTP A 701 MG MG A 702 1555 1555 1.93 LINK O1B GTP A 701 MG MG A 702 1555 1555 2.06 LINK MG MG A 702 O HOH A 820 1555 1555 2.25 LINK MG MG A 702 O HOH A 827 1555 1555 2.02 LINK MG MG A 702 O HOH A 894 1555 1555 2.44 CISPEP 1 SER A 567 PRO A 568 0 3.68 SITE 1 AC1 23 ILE A 421 GLY A 422 CYS A 423 GLY A 424 SITE 2 AC1 23 LYS A 425 THR A 426 THR A 427 ASN A 445 SITE 3 AC1 23 ARG A 528 ARG A 532 ASP A 583 LYS A 588 SITE 4 AC1 23 SER A 589 SER A 590 MG A 702 HOH A 809 SITE 5 AC1 23 HOH A 816 HOH A 820 HOH A 826 HOH A 827 SITE 6 AC1 23 HOH A 849 HOH A 894 HOH A 895 SITE 1 AC2 5 THR A 426 GTP A 701 HOH A 820 HOH A 827 SITE 2 AC2 5 HOH A 894 CRYST1 50.227 55.667 81.795 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012226 0.00000