HEADER TRANSFERASE 13-AUG-19 6U05 TITLE CRYSTAL STRUCTURE OF FUNGAL RNA KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: LIG1, RLG1, TRL1, CAALFM_C702060WA, CAJ7.0238, CAO19.13864, SOURCE 8 CAO19.6511; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RNA LIGASE, RNA REPAIR, POLYNUCLEOTIDE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHUMAN,Y.GOLDGUR,A.BANERJEE REVDAT 5 11-OCT-23 6U05 1 LINK REVDAT 4 01-JAN-20 6U05 1 REMARK REVDAT 3 25-DEC-19 6U05 1 JRNL REVDAT 2 27-NOV-19 6U05 1 JRNL REVDAT 1 06-NOV-19 6U05 0 JRNL AUTH A.BANERJEE,Y.GOLDGUR,B.SCHWER,S.SHUMAN JRNL TITL ATOMIC STRUCTURES OF THE RNA END-HEALING 5'-OH KINASE AND JRNL TITL 2 2',3'-CYCLIC PHOSPHODIESTERASE DOMAINS OF FUNGAL TRNA JRNL TITL 3 LIGASE: CONFORMATIONAL SWITCHES IN THE KINASE UPON BINDING JRNL TITL 4 OF THE GTP PHOSPHATE DONOR. JRNL REF NUCLEIC ACIDS RES. V. 47 11826 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31722405 JRNL DOI 10.1093/NAR/GKZ1049 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 38346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 2011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6700 - 4.6934 0.98 2797 153 0.1669 0.1838 REMARK 3 2 4.6934 - 3.7262 0.96 2654 140 0.1480 0.1841 REMARK 3 3 3.7262 - 3.2554 0.99 2731 153 0.1739 0.1980 REMARK 3 4 3.2554 - 2.9579 0.99 2727 149 0.1837 0.2430 REMARK 3 5 2.9579 - 2.7459 0.96 2596 148 0.1941 0.2216 REMARK 3 6 2.7459 - 2.5841 0.99 2691 164 0.1984 0.2461 REMARK 3 7 2.5841 - 2.4547 0.99 2680 132 0.1958 0.2137 REMARK 3 8 2.4547 - 2.3478 0.99 2657 147 0.2057 0.2360 REMARK 3 9 2.3478 - 2.2574 0.99 2704 140 0.2128 0.2496 REMARK 3 10 2.2574 - 2.1796 0.97 2630 150 0.2229 0.2981 REMARK 3 11 2.1796 - 2.1114 0.94 2537 145 0.2408 0.3125 REMARK 3 12 2.1114 - 2.0511 0.95 2577 144 0.2559 0.3117 REMARK 3 13 2.0511 - 1.9971 0.90 2424 135 0.2869 0.3316 REMARK 3 14 1.9971 - 1.9483 0.72 1930 111 0.3165 0.3845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 626 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5569 6.7121 9.1603 REMARK 3 T TENSOR REMARK 3 T11: 0.3106 T22: 0.2211 REMARK 3 T33: 0.2868 T12: -0.0420 REMARK 3 T13: 0.0238 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 4.8886 L22: 1.9873 REMARK 3 L33: 3.1656 L12: -0.7788 REMARK 3 L13: -2.4641 L23: 0.3426 REMARK 3 S TENSOR REMARK 3 S11: -0.1619 S12: -0.0928 S13: -0.0561 REMARK 3 S21: 0.0057 S22: 0.0793 S23: -0.0455 REMARK 3 S31: 0.1455 S32: -0.0197 S33: 0.0619 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 627 THROUGH 653 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5064 -14.7605 23.9033 REMARK 3 T TENSOR REMARK 3 T11: 0.5596 T22: 0.6428 REMARK 3 T33: 0.9041 T12: 0.0634 REMARK 3 T13: -0.0603 T23: 0.2249 REMARK 3 L TENSOR REMARK 3 L11: 0.4265 L22: 0.1911 REMARK 3 L33: 0.0272 L12: -0.2883 REMARK 3 L13: -0.0025 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: -0.1362 S12: -0.0751 S13: 0.2672 REMARK 3 S21: 0.0615 S22: 0.2588 S23: 0.5542 REMARK 3 S31: -0.3627 S32: -0.3089 S33: -0.1269 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 654 THROUGH 832 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.3023 -27.1090 27.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.2726 T22: 0.2751 REMARK 3 T33: 0.2656 T12: 0.0170 REMARK 3 T13: -0.0105 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 3.1448 L22: 2.1463 REMARK 3 L33: 3.1711 L12: -0.4573 REMARK 3 L13: -0.6113 L23: 0.4786 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: 0.2694 S13: -0.0203 REMARK 3 S21: -0.2090 S22: 0.0124 S23: 0.2280 REMARK 3 S31: -0.1640 S32: -0.4605 S33: -0.0544 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38436 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.948 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, SOLOMON REMARK 200 STARTING MODEL: 5U32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KH2PO4, 20% PEG3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.34500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 401 REMARK 465 ASN A 402 REMARK 465 GLY A 403 REMARK 465 ASN A 404 REMARK 465 GLU A 405 REMARK 465 GLY A 406 REMARK 465 LEU A 407 REMARK 465 SER A 408 REMARK 465 ARG A 532 REMARK 465 GLY A 533 REMARK 465 ASP A 534 REMARK 465 ASN A 535 REMARK 465 HIS A 536 REMARK 465 GLN A 537 REMARK 465 SER A 538 REMARK 465 ILE A 539 REMARK 465 LYS A 540 REMARK 465 SER A 541 REMARK 465 GLN A 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 712 O HOH A 1001 1.98 REMARK 500 O LYS A 764 O HOH A 1002 2.12 REMARK 500 NH2 ARG A 494 O VAL A 502 2.17 REMARK 500 O HOH A 1134 O HOH A 1164 2.17 REMARK 500 O LYS A 715 O HOH A 1001 2.17 REMARK 500 ND2 ASN A 782 O HOH A 1002 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 504 CA - CB - CG ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 691 1.39 -68.02 REMARK 500 ASN A 714 53.43 -96.83 REMARK 500 ASP A 736 15.13 56.00 REMARK 500 LYS A 737 -57.25 -121.60 REMARK 500 GLN A 765 69.55 64.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 763 LYS A 764 146.93 REMARK 500 ILE A 773 PRO A 774 -139.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 426 OG1 REMARK 620 2 GDP A 901 O1B 83.8 REMARK 620 3 HOH A1021 O 91.5 89.4 REMARK 620 4 HOH A1040 O 172.9 102.8 91.0 REMARK 620 5 HOH A1064 O 89.8 95.4 175.1 87.2 REMARK 620 6 HOH A1070 O 77.1 159.0 82.4 96.7 93.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 903 DBREF 6U05 A 401 832 UNP P43075 TRNL_CANAL 401 832 SEQADV 6U05 LEU A 543 UNP P43075 SER 543 CONFLICT SEQADV 6U05 LEU A 587 UNP P43075 SER 587 CONFLICT SEQRES 1 A 432 ALA ASN GLY ASN GLU GLY LEU SER THR THR THR LYS TYR SEQRES 2 A 432 ILE PHE VAL PRO ILE ALA THR ILE GLY CYS GLY LYS THR SEQRES 3 A 432 THR VAL PHE ASN THR LEU ASN ASN LEU PHE PRO GLN TRP SEQRES 4 A 432 THR HIS ILE GLN ASN ASP ASN ILE SER LYS LYS ALA LYS SEQRES 5 A 432 LEU LYS ILE CYS ASP LEU THR LEU LEU ALA LEU GLU ASP SEQRES 6 A 432 ASP ASP GLN SER VAL VAL LEU PHE ASP ARG ASN ASN SER SEQRES 7 A 432 ALA SER ARG GLU ARG ARG GLN ILE PHE THR THR ILE ASP SEQRES 8 A 432 GLN LYS ARG ASP GLU HIS LEU ASP ASP THR VAL ASP LEU SEQRES 9 A 432 LYS TYR ILE ALA ILE ASN PHE ILE PRO GLU ASP LEU SER SEQRES 10 A 432 GLU GLU GLU LEU TRP ASP ILE THR TYR ASN ARG VAL ILE SEQRES 11 A 432 GLN ARG GLY ASP ASN HIS GLN SER ILE LYS SER GLN LEU SEQRES 12 A 432 ASP GLU ASN LEU VAL GLU SER VAL MET LYS GLY PHE ILE SEQRES 13 A 432 GLN ARG TYR GLN PRO ILE ASN THR SER ARG SER PRO ASP SEQRES 14 A 432 ASP GLN PHE ASP HIS VAL ILE HIS LEU LYS LEU SER LYS SEQRES 15 A 432 ASP GLU ASN SER LEU LYS SER SER LEU GLU ASN VAL ARG SEQRES 16 A 432 ILE ILE ILE ASP ASP LEU VAL GLN ASN PHE PRO ASP LEU SEQRES 17 A 432 ILE LYS GLU LYS PRO ALA ASP GLU LEU ILE ASN GLU CYS SEQRES 18 A 432 PHE GLN LYS ALA LEU ASP TYR LYS PRO THR PHE VAL LYS SEQRES 19 A 432 ASN MET THR ALA ASN THR ILE LYS LYS ASP PRO THR TYR SEQRES 20 A 432 TYR GLY ILE ALA MET HIS TYR SER SER ILE LEU GLU ASN SEQRES 21 A 432 LEU GLU ILE VAL SER HIS ASN GLU HIS PHE GLN ASN ILE SEQRES 22 A 432 LYS SER HIS ILE GLN THR GLU PHE HIS VAL THR LEU GLY SEQRES 23 A 432 HIS ILE ALA SER SER LYS GLN ASP LYS ALA GLY ARG VAL SEQRES 24 A 432 LYS TRP LYS LYS LEU VAL LYS THR LEU GLY LYS GLY ASP SEQRES 25 A 432 PRO ASN LYS PRO LYS SER ALA LEU LYS PHE PHE ALA ASP SEQRES 26 A 432 VAL LYS LEU LEU GLN ILE VAL ILE ASN THR ASP LYS LEU SEQRES 27 A 432 ALA CYS ILE LYS VAL GLU ILE LEU LYS ILE TYR ASP THR SEQRES 28 A 432 ASN ASP VAL LEU GLN SER GLU ILE GLU PRO ILE ASN LYS SEQRES 29 A 432 GLN LEU HIS ILE THR ILE GLY CYS ILE PRO PRO ALA THR SEQRES 30 A 432 ALA VAL GLU SER ASN ILE THR LEU GLU GLU LEU TYR ASP SEQRES 31 A 432 ASN PRO ASP GLU GLN GLU LEU LYS PRO ASP GLY THR TYR SEQRES 32 A 432 LYS CYS GLY ASP ASP THR LEU HIS VAL PHE ASN PHE ASP SEQRES 33 A 432 ASN PRO ASP LEU LYS LEU PHE SER GLN GLN LEU PHE VAL SEQRES 34 A 432 ALA TYR GLN HET GDP A 901 28 HET MG A 902 1 HET PO4 A 903 5 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *168(H2 O) HELIX 1 AA1 GLY A 424 PHE A 436 1 13 HELIX 2 AA2 ASP A 445 ILE A 447 5 3 HELIX 3 AA3 LYS A 454 ALA A 462 1 9 HELIX 4 AA4 ALA A 479 ARG A 494 1 16 HELIX 5 AA5 ASP A 495 HIS A 497 5 3 HELIX 6 AA6 SER A 517 ILE A 530 1 14 HELIX 7 AA7 ASN A 546 TYR A 559 1 14 HELIX 8 AA8 PRO A 568 PHE A 572 5 5 HELIX 9 AA9 LYS A 588 PHE A 605 1 18 HELIX 10 AB1 ALA A 614 ASP A 627 1 14 HELIX 11 AB2 HIS A 653 ASN A 660 1 8 HELIX 12 AB3 ASN A 667 HIS A 669 5 3 HELIX 13 AB4 PHE A 670 SER A 675 1 6 HELIX 14 AB5 ALA A 689 GLN A 693 5 5 HELIX 15 AB6 ASP A 694 LEU A 708 1 15 HELIX 16 AB7 VAL A 779 TYR A 789 1 11 SHEET 1 AA1 5 THR A 440 GLN A 443 0 SHEET 2 AA1 5 VAL A 470 ASP A 474 1 O LEU A 472 N THR A 440 SHEET 3 AA1 5 THR A 411 ILE A 418 1 N PHE A 415 O VAL A 471 SHEET 4 AA1 5 ASP A 503 ASN A 510 1 O ILE A 509 N VAL A 416 SHEET 5 AA1 5 HIS A 574 HIS A 577 1 O ILE A 576 N ASN A 510 SHEET 1 AA2 9 GLY A 801 CYS A 805 0 SHEET 2 AA2 9 ASP A 808 ASN A 814 -1 O ASP A 808 N CYS A 805 SHEET 3 AA2 9 LYS A 717 ASN A 734 -1 N ILE A 731 O PHE A 813 SHEET 4 AA2 9 LYS A 821 ALA A 830 -1 O GLN A 825 N ALA A 724 SHEET 5 AA2 9 TYR A 647 MET A 652 -1 N ALA A 651 O GLN A 826 SHEET 6 AA2 9 PHE A 681 HIS A 687 -1 O LEU A 685 N TYR A 648 SHEET 7 AA2 9 HIS A 767 CYS A 772 -1 O HIS A 767 N THR A 684 SHEET 8 AA2 9 LEU A 738 ASP A 750 -1 N ALA A 739 O ILE A 770 SHEET 9 AA2 9 LYS A 717 ASN A 734 -1 N GLN A 730 O LYS A 742 LINK OG1 THR A 426 MG MG A 902 1555 1555 2.06 LINK O1B GDP A 901 MG MG A 902 1555 1555 2.13 LINK MG MG A 902 O HOH A1021 1555 1555 2.23 LINK MG MG A 902 O HOH A1040 1555 1555 2.19 LINK MG MG A 902 O HOH A1064 1555 1555 2.09 LINK MG MG A 902 O HOH A1070 1555 1555 2.34 CISPEP 1 ASP A 503 LEU A 504 0 26.21 CISPEP 2 SER A 567 PRO A 568 0 0.79 SITE 1 AC1 19 GLY A 422 CYS A 423 GLY A 424 LYS A 425 SITE 2 AC1 19 THR A 426 THR A 427 ARG A 528 ASP A 583 SITE 3 AC1 19 LYS A 588 SER A 589 SER A 590 LEU A 626 SITE 4 AC1 19 MG A 902 HOH A1011 HOH A1021 HOH A1040 SITE 5 AC1 19 HOH A1053 HOH A1054 HOH A1062 SITE 1 AC2 6 THR A 426 GDP A 901 HOH A1021 HOH A1040 SITE 2 AC2 6 HOH A1064 HOH A1070 SITE 1 AC3 10 HIS A 682 THR A 684 HIS A 767 THR A 769 SITE 2 AC3 10 ALA A 778 VAL A 779 HOH A1012 HOH A1022 SITE 3 AC3 10 HOH A1056 HOH A1071 CRYST1 77.747 44.690 79.500 90.00 93.53 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012862 0.000000 0.000794 0.00000 SCALE2 0.000000 0.022376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012603 0.00000