HEADER ANTITOXIN 14-AUG-19 6U0I TITLE PUTATIVE ANTITOXIN HICB3 FROM ESCHERICHIA COLI STR. K-12 SUBSTR. DH10B COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITOXIN HICB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ANTITOXIN,ANTITOXIN FOR THE HICAB TOXIN-ANTITOXIN SYSTEM, COMPND 5 ANTITOXIN OF THE HICA-HICB TOXIN-ANTITOXIN SYSTEM,HTH-TYPE COMPND 6 TRANSCRIPTIONAL REGULATOR,PUTATIVE HTH-TYPE TRANSCRIPTIONAL REGULATOR COMPND 7 YDCQ,PUTATIVE TRANSCRIPTIONAL REGULATOR,TOXIN-ANTITOXIN SYSTEM, COMPND 8 ANTITOXIN COMPONENT,HICB FAMILY; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI STR. K-12 SUBSTR. DH10B; SOURCE 3 ORGANISM_TAXID: 316385; SOURCE 4 GENE: HICB_3, YDCQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ANTITOXIN EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,C.TESAR,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 18-DEC-19 6U0I 1 REMARK REVDAT 1 28-AUG-19 6U0I 0 JRNL AUTH J.OSIPIUK,C.TESAR,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL PUTATIVE ANTITOXIN HICB3 FROM ESCHERICHIA COLI STR. K-12 JRNL TITL 2 SUBSTR. DH10B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 45879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2422 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.91000 REMARK 3 B22 (A**2) : -2.38000 REMARK 3 B33 (A**2) : -2.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.526 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4480 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4314 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6099 ; 1.789 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10034 ; 1.346 ; 1.564 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 6.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;34.612 ;23.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;16.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4941 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 834 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4242 77.3203 5.6873 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.0701 REMARK 3 T33: 0.0840 T12: 0.0205 REMARK 3 T13: -0.0074 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1498 L22: 0.8638 REMARK 3 L33: 3.3694 L12: 0.0009 REMARK 3 L13: -0.5461 L23: -0.8512 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0507 S13: 0.0753 REMARK 3 S21: 0.0088 S22: 0.0192 S23: -0.1467 REMARK 3 S31: -0.0052 S32: 0.3325 S33: -0.0263 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 145 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8573 96.5585 24.3353 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.0430 REMARK 3 T33: 0.0286 T12: -0.0111 REMARK 3 T13: -0.0115 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.5020 L22: 0.2821 REMARK 3 L33: 2.7837 L12: 0.2897 REMARK 3 L13: -0.1056 L23: -0.5801 REMARK 3 S TENSOR REMARK 3 S11: 0.0667 S12: -0.0269 S13: -0.1162 REMARK 3 S21: 0.0768 S22: -0.0401 S23: -0.0565 REMARK 3 S31: 0.0773 S32: 0.1549 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 501 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0462 67.1083 54.3734 REMARK 3 T TENSOR REMARK 3 T11: 0.2254 T22: 0.0835 REMARK 3 T33: 0.0486 T12: 0.0053 REMARK 3 T13: 0.0205 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.2070 L22: 1.0226 REMARK 3 L33: 2.9112 L12: 0.3336 REMARK 3 L13: 0.1952 L23: -0.8221 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.0696 S13: -0.0976 REMARK 3 S21: -0.0675 S22: 0.0572 S23: -0.1671 REMARK 3 S31: 0.0967 S32: 0.2733 S33: -0.0466 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 145 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0696 47.6983 35.8639 REMARK 3 T TENSOR REMARK 3 T11: 0.3288 T22: 0.0269 REMARK 3 T33: 0.0336 T12: 0.0094 REMARK 3 T13: 0.0319 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.9021 L22: 0.5656 REMARK 3 L33: 2.1118 L12: -0.1903 REMARK 3 L13: -0.5161 L23: -0.8654 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: -0.0413 S13: 0.1603 REMARK 3 S21: 0.0105 S22: -0.0473 S23: -0.0712 REMARK 3 S31: -0.1427 S32: 0.1302 S33: -0.0277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6U0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 25% PEG 3350, REMARK 280 0.1 M BIS-TRIS:HCL, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.52250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.23800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.52250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.23800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 280 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 VAL B 5 REMARK 465 GLU B 6 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 ARG C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 ARG D 2 REMARK 465 GLU D 3 REMARK 465 THR D 4 REMARK 465 VAL D 5 REMARK 465 GLU D 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 31 CD GLU C 31 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 23 CG - SE - CE ANGL. DEV. = 14.8 DEGREES REMARK 500 MSE C 23 CG - SE - CE ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 33 128.60 -37.61 REMARK 500 SER A 72 -55.12 -27.54 REMARK 500 THR B 34 -159.79 -148.04 REMARK 500 THR D 34 -155.90 -154.32 REMARK 500 ASN D 61 69.95 29.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97301 RELATED DB: TARGETTRACK DBREF 6U0I A 1 145 UNP C3TAR7 C3TAR7_ECOLX 1 145 DBREF 6U0I B 1 145 UNP C3TAR7 C3TAR7_ECOLX 1 145 DBREF 6U0I C 1 145 UNP C3TAR7 C3TAR7_ECOLX 1 145 DBREF 6U0I D 1 145 UNP C3TAR7 C3TAR7_ECOLX 1 145 SEQADV 6U0I SER A -2 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I ASN A -1 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I ALA A 0 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I SER B -2 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I ASN B -1 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I ALA B 0 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I SER C -2 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I ASN C -1 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I ALA C 0 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I SER D -2 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I ASN D -1 UNP C3TAR7 EXPRESSION TAG SEQADV 6U0I ALA D 0 UNP C3TAR7 EXPRESSION TAG SEQRES 1 A 148 SER ASN ALA MSE ARG GLU THR VAL GLU ILE MSE ARG TYR SEQRES 2 A 148 PRO VAL THR LEU THR PRO ALA PRO GLU GLY GLY TYR MSE SEQRES 3 A 148 VAL SER PHE VAL ASP ILE PRO GLU ALA LEU THR GLN GLY SEQRES 4 A 148 GLU THR VAL ALA GLU ALA MSE GLU ALA ALA LYS ASP ALA SEQRES 5 A 148 LEU LEU THR ALA PHE ASP PHE TYR PHE GLU ASP ASN GLU SEQRES 6 A 148 LEU ILE PRO LEU PRO SER PRO LEU ASN SER HIS ASP HIS SEQRES 7 A 148 PHE ILE GLU VAL PRO LEU SER VAL ALA SER LYS VAL LEU SEQRES 8 A 148 LEU LEU ASN ALA PHE LEU GLN SER GLU ILE THR GLN GLN SEQRES 9 A 148 GLU LEU ALA ARG ARG ILE GLY LYS PRO LYS GLN GLU ILE SEQRES 10 A 148 THR ARG LEU PHE ASN LEU HIS HIS ALA THR LYS ILE ASP SEQRES 11 A 148 ALA VAL GLN LEU ALA ALA LYS ALA LEU GLY LYS GLU LEU SEQRES 12 A 148 SER LEU VAL MSE VAL SEQRES 1 B 148 SER ASN ALA MSE ARG GLU THR VAL GLU ILE MSE ARG TYR SEQRES 2 B 148 PRO VAL THR LEU THR PRO ALA PRO GLU GLY GLY TYR MSE SEQRES 3 B 148 VAL SER PHE VAL ASP ILE PRO GLU ALA LEU THR GLN GLY SEQRES 4 B 148 GLU THR VAL ALA GLU ALA MSE GLU ALA ALA LYS ASP ALA SEQRES 5 B 148 LEU LEU THR ALA PHE ASP PHE TYR PHE GLU ASP ASN GLU SEQRES 6 B 148 LEU ILE PRO LEU PRO SER PRO LEU ASN SER HIS ASP HIS SEQRES 7 B 148 PHE ILE GLU VAL PRO LEU SER VAL ALA SER LYS VAL LEU SEQRES 8 B 148 LEU LEU ASN ALA PHE LEU GLN SER GLU ILE THR GLN GLN SEQRES 9 B 148 GLU LEU ALA ARG ARG ILE GLY LYS PRO LYS GLN GLU ILE SEQRES 10 B 148 THR ARG LEU PHE ASN LEU HIS HIS ALA THR LYS ILE ASP SEQRES 11 B 148 ALA VAL GLN LEU ALA ALA LYS ALA LEU GLY LYS GLU LEU SEQRES 12 B 148 SER LEU VAL MSE VAL SEQRES 1 C 148 SER ASN ALA MSE ARG GLU THR VAL GLU ILE MSE ARG TYR SEQRES 2 C 148 PRO VAL THR LEU THR PRO ALA PRO GLU GLY GLY TYR MSE SEQRES 3 C 148 VAL SER PHE VAL ASP ILE PRO GLU ALA LEU THR GLN GLY SEQRES 4 C 148 GLU THR VAL ALA GLU ALA MSE GLU ALA ALA LYS ASP ALA SEQRES 5 C 148 LEU LEU THR ALA PHE ASP PHE TYR PHE GLU ASP ASN GLU SEQRES 6 C 148 LEU ILE PRO LEU PRO SER PRO LEU ASN SER HIS ASP HIS SEQRES 7 C 148 PHE ILE GLU VAL PRO LEU SER VAL ALA SER LYS VAL LEU SEQRES 8 C 148 LEU LEU ASN ALA PHE LEU GLN SER GLU ILE THR GLN GLN SEQRES 9 C 148 GLU LEU ALA ARG ARG ILE GLY LYS PRO LYS GLN GLU ILE SEQRES 10 C 148 THR ARG LEU PHE ASN LEU HIS HIS ALA THR LYS ILE ASP SEQRES 11 C 148 ALA VAL GLN LEU ALA ALA LYS ALA LEU GLY LYS GLU LEU SEQRES 12 C 148 SER LEU VAL MSE VAL SEQRES 1 D 148 SER ASN ALA MSE ARG GLU THR VAL GLU ILE MSE ARG TYR SEQRES 2 D 148 PRO VAL THR LEU THR PRO ALA PRO GLU GLY GLY TYR MSE SEQRES 3 D 148 VAL SER PHE VAL ASP ILE PRO GLU ALA LEU THR GLN GLY SEQRES 4 D 148 GLU THR VAL ALA GLU ALA MSE GLU ALA ALA LYS ASP ALA SEQRES 5 D 148 LEU LEU THR ALA PHE ASP PHE TYR PHE GLU ASP ASN GLU SEQRES 6 D 148 LEU ILE PRO LEU PRO SER PRO LEU ASN SER HIS ASP HIS SEQRES 7 D 148 PHE ILE GLU VAL PRO LEU SER VAL ALA SER LYS VAL LEU SEQRES 8 D 148 LEU LEU ASN ALA PHE LEU GLN SER GLU ILE THR GLN GLN SEQRES 9 D 148 GLU LEU ALA ARG ARG ILE GLY LYS PRO LYS GLN GLU ILE SEQRES 10 D 148 THR ARG LEU PHE ASN LEU HIS HIS ALA THR LYS ILE ASP SEQRES 11 D 148 ALA VAL GLN LEU ALA ALA LYS ALA LEU GLY LYS GLU LEU SEQRES 12 D 148 SER LEU VAL MSE VAL MODRES 6U0I MSE A 8 MET MODIFIED RESIDUE MODRES 6U0I MSE A 23 MET MODIFIED RESIDUE MODRES 6U0I MSE A 43 MET MODIFIED RESIDUE MODRES 6U0I MSE A 144 MET MODIFIED RESIDUE MODRES 6U0I MSE B 8 MET MODIFIED RESIDUE MODRES 6U0I MSE B 23 MET MODIFIED RESIDUE MODRES 6U0I MSE B 43 MET MODIFIED RESIDUE MODRES 6U0I MSE B 144 MET MODIFIED RESIDUE MODRES 6U0I MSE C 8 MET MODIFIED RESIDUE MODRES 6U0I MSE C 23 MET MODIFIED RESIDUE MODRES 6U0I MSE C 43 MET MODIFIED RESIDUE MODRES 6U0I MSE C 144 MET MODIFIED RESIDUE MODRES 6U0I MSE D 8 MET MODIFIED RESIDUE MODRES 6U0I MSE D 23 MET MODIFIED RESIDUE MODRES 6U0I MSE D 43 MET MODIFIED RESIDUE MODRES 6U0I MSE D 144 MET MODIFIED RESIDUE HET MSE A 8 8 HET MSE A 23 8 HET MSE A 43 8 HET MSE A 144 8 HET MSE B 8 8 HET MSE B 23 8 HET MSE B 43 8 HET MSE B 144 8 HET MSE C 8 8 HET MSE C 23 13 HET MSE C 43 8 HET MSE C 144 8 HET MSE D 8 8 HET MSE D 23 8 HET MSE D 43 8 HET MSE D 144 8 HET CL A 501 1 HET CL C 501 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *367(H2 O) HELIX 1 AA1 ILE A 29 LEU A 33 5 5 HELIX 2 AA2 THR A 38 ASP A 60 1 23 HELIX 3 AA3 PRO A 80 GLU A 97 1 18 HELIX 4 AA4 THR A 99 GLY A 108 1 10 HELIX 5 AA5 PRO A 110 PHE A 118 1 9 HELIX 6 AA6 LYS A 125 LEU A 136 1 12 HELIX 7 AA7 THR B 38 ASP B 60 1 23 HELIX 8 AA8 PRO B 80 GLU B 97 1 18 HELIX 9 AA9 THR B 99 GLY B 108 1 10 HELIX 10 AB1 LYS B 111 ARG B 116 1 6 HELIX 11 AB2 LEU B 117 ASN B 119 5 3 HELIX 12 AB3 LYS B 125 LEU B 136 1 12 HELIX 13 AB4 ILE C 29 LEU C 33 5 5 HELIX 14 AB5 THR C 38 ASP C 60 1 23 HELIX 15 AB6 PRO C 80 GLU C 97 1 18 HELIX 16 AB7 THR C 99 GLY C 108 1 10 HELIX 17 AB8 PRO C 110 PHE C 118 1 9 HELIX 18 AB9 LYS C 125 LEU C 136 1 12 HELIX 19 AC1 THR D 38 ASP D 60 1 23 HELIX 20 AC2 PRO D 80 GLU D 97 1 18 HELIX 21 AC3 THR D 99 GLY D 108 1 10 HELIX 22 AC4 PRO D 110 ILE D 114 5 5 HELIX 23 AC5 LYS D 125 LEU D 136 1 12 SHEET 1 AA1 4 THR A 34 GLY A 36 0 SHEET 2 AA1 4 TYR A 22 PHE A 26 -1 N TYR A 22 O GLY A 36 SHEET 3 AA1 4 ARG A 9 PRO A 16 -1 N THR A 15 O MSE A 23 SHEET 4 AA1 4 HIS A 75 GLU A 78 -1 O ILE A 77 N TYR A 10 SHEET 1 AA2 2 GLU A 139 VAL A 145 0 SHEET 2 AA2 2 GLU B 139 VAL B 145 -1 O GLU B 139 N VAL A 145 SHEET 1 AA3 4 LEU B 33 GLY B 36 0 SHEET 2 AA3 4 TYR B 22 SER B 25 -1 N TYR B 22 O GLY B 36 SHEET 3 AA3 4 ARG B 9 PRO B 16 -1 N THR B 15 O MSE B 23 SHEET 4 AA3 4 HIS B 75 GLU B 78 -1 O ILE B 77 N TYR B 10 SHEET 1 AA4 4 THR C 34 GLY C 36 0 SHEET 2 AA4 4 TYR C 22 SER C 25 -1 N VAL C 24 O THR C 34 SHEET 3 AA4 4 ARG C 9 PRO C 16 -1 N THR C 15 O MSE C 23 SHEET 4 AA4 4 HIS C 75 GLU C 78 -1 O ILE C 77 N TYR C 10 SHEET 1 AA5 2 LEU C 140 MSE C 144 0 SHEET 2 AA5 2 LEU D 140 MSE D 144 -1 O SER D 141 N VAL C 143 SHEET 1 AA6 4 ILE D 29 GLY D 36 0 SHEET 2 AA6 4 TYR D 22 PHE D 26 -1 N TYR D 22 O GLY D 36 SHEET 3 AA6 4 ARG D 9 PRO D 16 -1 N THR D 13 O SER D 25 SHEET 4 AA6 4 HIS D 75 GLU D 78 -1 O ILE D 77 N TYR D 10 LINK C ILE A 7 N MSE A 8 1555 1555 1.34 LINK C MSE A 8 N ARG A 9 1555 1555 1.32 LINK C TYR A 22 N MSE A 23 1555 1555 1.32 LINK C MSE A 23 N VAL A 24 1555 1555 1.33 LINK C ALA A 42 N MSE A 43 1555 1555 1.34 LINK C MSE A 43 N GLU A 44 1555 1555 1.34 LINK C VAL A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N VAL A 145 1555 1555 1.34 LINK C ILE B 7 N MSE B 8 1555 1555 1.34 LINK C MSE B 8 N ARG B 9 1555 1555 1.33 LINK C TYR B 22 N MSE B 23 1555 1555 1.32 LINK C MSE B 23 N VAL B 24 1555 1555 1.33 LINK C ALA B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N GLU B 44 1555 1555 1.32 LINK C VAL B 143 N MSE B 144 1555 1555 1.33 LINK C MSE B 144 N VAL B 145 1555 1555 1.33 LINK C ILE C 7 N MSE C 8 1555 1555 1.33 LINK C MSE C 8 N ARG C 9 1555 1555 1.33 LINK C TYR C 22 N MSE C 23 1555 1555 1.34 LINK C MSE C 23 N VAL C 24 1555 1555 1.33 LINK C ALA C 42 N MSE C 43 1555 1555 1.34 LINK C MSE C 43 N GLU C 44 1555 1555 1.33 LINK C VAL C 143 N MSE C 144 1555 1555 1.33 LINK C MSE C 144 N VAL C 145 1555 1555 1.34 LINK C ILE D 7 N MSE D 8 1555 1555 1.33 LINK C MSE D 8 N ARG D 9 1555 1555 1.32 LINK C TYR D 22 N MSE D 23 1555 1555 1.32 LINK C MSE D 23 N VAL D 24 1555 1555 1.33 LINK C ALA D 42 N MSE D 43 1555 1555 1.34 LINK C MSE D 43 N GLU D 44 1555 1555 1.33 LINK C VAL D 143 N MSE D 144 1555 1555 1.33 LINK C MSE D 144 N VAL D 145 1555 1555 1.33 SITE 1 AC1 5 LYS A 125 ILE A 126 HOH A 689 ILE B 126 SITE 2 AC1 5 HOH B 275 SITE 1 AC2 2 ILE C 126 ILE D 126 CRYST1 61.045 86.476 122.888 90.00 96.10 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016381 0.000000 0.001751 0.00000 SCALE2 0.000000 0.011564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008184 0.00000