HEADER HYDROLASE 15-AUG-19 6U0Z TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA IN THE COMPLEX WITH THE HYDROLYZED TITLE 3 PENICILLIN G COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METALLO-BETA-LACTAMASE L1 (BETA-LACTAMASE TYPE II) COMPND 3 (EC 3.5.2.6) (PENICILLINASE); COMPND 4 CHAIN: A; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA (STRAIN K279A); SOURCE 3 ORGANISM_TAXID: 522373; SOURCE 4 STRAIN: K279A; SOURCE 5 GENE: SMLT2667; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS LACTAM ANTIBIOTICS, PENICILLIN G, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 4 11-OCT-23 6U0Z 1 HETSYN REVDAT 3 29-JUL-20 6U0Z 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 18-DEC-19 6U0Z 1 REMARK REVDAT 1 11-SEP-19 6U0Z 0 JRNL AUTH Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM JRNL TITL 2 STENOTROPHOMONAS MALTOPHILIA IN THE COMPLEX WITH THE JRNL TITL 3 HYDROLYZED PENICILLIN G. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3000 - 3.9700 0.99 2870 137 0.1516 0.1671 REMARK 3 2 3.9700 - 3.1500 0.99 2690 141 0.1365 0.1346 REMARK 3 3 3.1500 - 2.7600 0.99 2634 132 0.1599 0.1834 REMARK 3 4 2.7600 - 2.5000 0.99 2644 128 0.1681 0.1833 REMARK 3 5 2.5000 - 2.3200 0.99 2589 143 0.1628 0.1813 REMARK 3 6 2.3200 - 2.1900 0.99 2610 132 0.1543 0.1886 REMARK 3 7 2.1900 - 2.0800 0.99 2614 134 0.1581 0.2306 REMARK 3 8 2.0800 - 1.9900 0.99 2584 138 0.1614 0.1948 REMARK 3 9 1.9900 - 1.9100 0.99 2590 115 0.1695 0.1985 REMARK 3 10 1.9100 - 1.8500 0.99 2598 134 0.1697 0.1929 REMARK 3 11 1.8500 - 1.7900 0.99 2565 149 0.1671 0.2227 REMARK 3 12 1.7900 - 1.7400 1.00 2586 135 0.1802 0.2014 REMARK 3 13 1.7400 - 1.6900 1.00 2538 140 0.1853 0.2427 REMARK 3 14 1.6900 - 1.6500 1.00 2595 133 0.1926 0.2360 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.158 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.348 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2255 REMARK 3 ANGLE : 1.004 3094 REMARK 3 CHIRALITY : 0.056 347 REMARK 3 PLANARITY : 0.006 402 REMARK 3 DIHEDRAL : 15.087 1343 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4931 -11.7618 8.5966 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1704 REMARK 3 T33: 0.1894 T12: 0.0187 REMARK 3 T13: 0.0057 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.1578 L22: 4.5916 REMARK 3 L33: 2.2083 L12: 0.4001 REMARK 3 L13: -0.4408 L23: -3.0082 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0115 S13: -0.0503 REMARK 3 S21: 0.0821 S22: -0.1975 S23: -0.2620 REMARK 3 S31: -0.0062 S32: 0.1618 S33: 0.1544 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4132 -20.3990 7.6584 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.0905 REMARK 3 T33: 0.1182 T12: 0.0324 REMARK 3 T13: 0.0003 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.2651 L22: 4.0522 REMARK 3 L33: 3.4454 L12: 0.2392 REMARK 3 L13: -0.8256 L23: -0.5393 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.1218 S13: -0.1913 REMARK 3 S21: -0.1608 S22: -0.0501 S23: -0.0021 REMARK 3 S31: 0.1940 S32: 0.0986 S33: 0.0621 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.1206 -13.4532 12.2537 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.0857 REMARK 3 T33: 0.1233 T12: 0.0105 REMARK 3 T13: 0.0014 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.0874 L22: 0.9193 REMARK 3 L33: 1.1526 L12: -0.1724 REMARK 3 L13: -0.1795 L23: 0.0912 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: 0.0617 S13: -0.1243 REMARK 3 S21: -0.0284 S22: -0.0391 S23: 0.0529 REMARK 3 S31: 0.1379 S32: -0.0033 S33: 0.0406 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.3852 5.2407 22.0414 REMARK 3 T TENSOR REMARK 3 T11: 0.1739 T22: 0.1152 REMARK 3 T33: 0.1156 T12: -0.0030 REMARK 3 T13: -0.0471 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 4.8809 L22: 7.7372 REMARK 3 L33: 1.6744 L12: -1.8546 REMARK 3 L13: -0.6161 L23: 0.3196 REMARK 3 S TENSOR REMARK 3 S11: -0.0676 S12: -0.0691 S13: 0.4722 REMARK 3 S21: 0.1407 S22: 0.0807 S23: -0.2493 REMARK 3 S31: -0.1897 S32: 0.0482 S33: 0.0014 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.6041 -7.9719 28.4985 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.1265 REMARK 3 T33: 0.0937 T12: 0.0198 REMARK 3 T13: -0.0236 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.4279 L22: 6.4307 REMARK 3 L33: 2.5133 L12: 0.0548 REMARK 3 L13: -0.6775 L23: -0.0672 REMARK 3 S TENSOR REMARK 3 S11: -0.0654 S12: -0.1422 S13: -0.0661 REMARK 3 S21: 0.4951 S22: 0.0458 S23: 0.2641 REMARK 3 S31: 0.0220 S32: -0.0729 S33: 0.0294 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6067 -19.8268 22.8660 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.1699 REMARK 3 T33: 0.1545 T12: 0.0622 REMARK 3 T13: -0.0270 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.8496 L22: 3.0590 REMARK 3 L33: 3.6797 L12: 0.0827 REMARK 3 L13: -0.7349 L23: -0.4238 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.0001 S13: -0.2268 REMARK 3 S21: 0.0997 S22: 0.0834 S23: -0.2528 REMARK 3 S31: 0.4446 S32: 0.5788 S33: 0.0599 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2419 -1.4836 30.9262 REMARK 3 T TENSOR REMARK 3 T11: 0.2168 T22: 0.1987 REMARK 3 T33: 0.1811 T12: 0.0380 REMARK 3 T13: -0.0681 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 4.6635 L22: 7.0065 REMARK 3 L33: 2.4218 L12: 3.9152 REMARK 3 L13: 0.7050 L23: 1.2657 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: -0.1748 S13: 0.2087 REMARK 3 S21: 0.4790 S22: 0.0353 S23: -0.1360 REMARK 3 S31: -0.1100 S32: 0.1479 S33: 0.0086 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38907 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.80 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.00 REMARK 200 R MERGE FOR SHELL (I) : 0.94300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 6U0Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.81133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.62267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.81133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.62267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.81133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.62267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.81133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.62267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -104.75900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -104.75900 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 452 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 610 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 ASN A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 THR A 289 REMARK 465 ARG A 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 156.39 70.43 REMARK 500 ALA A 106 53.13 -95.28 REMARK 500 ASP A 192 -168.14 -103.87 REMARK 500 TYR A 220 73.32 -150.33 REMARK 500 CYS A 239 70.71 -156.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PNK A 306 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 HIS A 107 ND1 98.4 REMARK 620 3 HIS A 181 NE2 97.6 106.0 REMARK 620 4 PNK A 306 O4 172.4 86.4 86.6 REMARK 620 5 HOH A 401 O 113.7 113.5 123.7 58.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD2 REMARK 620 2 HIS A 110 NE2 93.2 REMARK 620 3 HIS A 246 NE2 89.7 96.1 REMARK 620 4 PNK A 306 N1 89.9 171.3 92.1 REMARK 620 5 PNK A 306 O2 162.7 103.6 84.8 74.0 REMARK 620 6 HOH A 401 O 94.5 109.4 153.9 62.2 83.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 572 O REMARK 620 2 HOH A 572 O 135.2 REMARK 620 3 HOH A 586 O 70.6 148.3 REMARK 620 4 HOH A 586 O 148.4 70.7 94.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U0Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APO-FORM DBREF 6U0Z A 19 290 UNP B2FTM1 B2FTM1_STRMK 19 290 SEQADV 6U0Z SER A 17 UNP B2FTM1 EXPRESSION TAG SEQADV 6U0Z ASN A 18 UNP B2FTM1 EXPRESSION TAG SEQRES 1 A 274 SER ASN ALA SER ALA ALA GLU ALA PRO LEU PRO GLN LEU SEQRES 2 A 274 ARG ALA TYR THR VAL ASP ALA SER TRP LEU GLN PRO MET SEQRES 3 A 274 ALA PRO LEU GLN VAL ALA ASP HIS THR TRP GLN ILE GLY SEQRES 4 A 274 THR GLU ASP LEU THR ALA LEU LEU VAL GLN THR ALA GLU SEQRES 5 A 274 GLY ALA VAL LEU LEU ASP GLY GLY MET PRO GLN MET ALA SEQRES 6 A 274 GLY HIS LEU LEU ASP ASN MET LYS LEU ARG GLY VAL ALA SEQRES 7 A 274 PRO GLN ASP LEU ARG LEU ILE LEU LEU SER HIS ALA HIS SEQRES 8 A 274 ALA ASP HIS ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG SEQRES 9 A 274 THR GLY ALA HIS VAL ALA ALA ASN ALA GLU THR ALA VAL SEQRES 10 A 274 LEU LEU ALA ARG GLY GLY SER ASN ASP LEU HIS PHE GLY SEQRES 11 A 274 ASP GLY ILE THR TYR PRO PRO ALA SER ALA ASP ARG ILE SEQRES 12 A 274 ILE MET ASP GLY GLU VAL VAL THR VAL GLY GLY ILE ALA SEQRES 13 A 274 PHE THR ALA HIS PHE MET PRO GLY HIS THR PRO GLY SER SEQRES 14 A 274 THR ALA TRP THR TRP THR ASP THR ARG ASP GLY LYS PRO SEQRES 15 A 274 VAL ARG ILE ALA TYR ALA ASP SER LEU SER ALA PRO GLY SEQRES 16 A 274 TYR GLN LEU LYS GLY ASN PRO ARG TYR PRO ARG LEU ILE SEQRES 17 A 274 GLU ASP TYR LYS ARG SER PHE ALA THR VAL ARG ALA LEU SEQRES 18 A 274 PRO CYS ASP LEU LEU LEU THR PRO HIS PRO GLY ALA SER SEQRES 19 A 274 ASN TRP ASN TYR ALA VAL GLY SER LYS ALA SER ALA GLU SEQRES 20 A 274 ALA LEU THR CYS ASN ALA TYR ALA ASP ALA ALA GLU LYS SEQRES 21 A 274 LYS PHE ASP ALA GLN LEU ALA ARG GLU THR ALA GLY THR SEQRES 22 A 274 ARG HET GLC B 1 11 HET FRU B 2 12 HET GLC C 1 11 HET FRU C 2 12 HET SO4 A 303 5 HET PEG A 304 7 HET ZN A 305 1 HET PNK A 306 16 HET ZN A 307 1 HET ZN A 308 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ZN ZINC ION HETNAM PNK (2R,4S)-2-{(R)-CARBOXY[(PHENYLACETYL)AMINO]METHYL}-5,5- HETNAM 2 PNK DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC ACID HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN PNK PENICILLIN, HYDROXYLATED FORM FORMUL 2 GLC 2(C6 H12 O6) FORMUL 2 FRU 2(C6 H12 O6) FORMUL 4 SO4 O4 S 2- FORMUL 5 PEG C4 H10 O3 FORMUL 6 ZN 3(ZN 2+) FORMUL 7 PNK C16 H20 N2 O5 S FORMUL 10 HOH *222(H2 O) HELIX 1 AA1 ASP A 35 GLN A 40 5 6 HELIX 2 AA2 MET A 77 GLN A 79 5 3 HELIX 3 AA3 MET A 80 ARG A 91 1 12 HELIX 4 AA4 ALA A 94 GLN A 96 5 3 HELIX 5 AA5 HIS A 107 GLY A 112 1 6 HELIX 6 AA6 PRO A 113 THR A 121 1 9 HELIX 7 AA7 ASN A 128 ARG A 137 1 10 HELIX 8 AA8 ARG A 222 ALA A 236 1 15 HELIX 9 AA9 HIS A 246 ASN A 251 5 6 HELIX 10 AB1 ASN A 253 ALA A 260 5 8 HELIX 11 AB2 THR A 266 GLY A 288 1 23 SHEET 1 AA1 7 LEU A 45 ALA A 48 0 SHEET 2 AA1 7 THR A 51 GLN A 53 -1 O GLN A 53 N LEU A 45 SHEET 3 AA1 7 LEU A 62 THR A 66 -1 O LEU A 63 N TRP A 52 SHEET 4 AA1 7 GLY A 69 LEU A 73 -1 O VAL A 71 N VAL A 64 SHEET 5 AA1 7 LEU A 98 LEU A 102 1 O LEU A 102 N LEU A 72 SHEET 6 AA1 7 HIS A 124 ALA A 127 1 O HIS A 124 N ILE A 101 SHEET 7 AA1 7 ARG A 158 ILE A 159 1 O ARG A 158 N ALA A 127 SHEET 1 AA2 5 VAL A 165 VAL A 168 0 SHEET 2 AA2 5 ILE A 171 PHE A 177 -1 O PHE A 173 N VAL A 166 SHEET 3 AA2 5 THR A 186 ARG A 194 -1 O ALA A 187 N HIS A 176 SHEET 4 AA2 5 LYS A 197 TYR A 203 -1 O TYR A 203 N TRP A 188 SHEET 5 AA2 5 LEU A 241 LEU A 243 1 O LEU A 241 N ALA A 202 SSBOND 1 CYS A 239 CYS A 267 1555 1555 2.06 LINK C1 GLC B 1 O2 FRU B 2 1555 1555 1.43 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.41 LINK NE2 HIS A 105 ZN ZN A 307 1555 1555 2.05 LINK ND1 HIS A 107 ZN ZN A 307 1555 1555 2.09 LINK OD2 ASP A 109 ZN ZN A 308 1555 1555 2.08 LINK NE2 HIS A 110 ZN ZN A 308 1555 1555 2.04 LINK NE2 HIS A 181 ZN ZN A 307 1555 1555 2.01 LINK NE2 HIS A 246 ZN ZN A 308 1555 1555 2.09 LINK ZN ZN A 305 O HOH A 572 1555 1555 2.57 LINK ZN ZN A 305 O HOH A 572 1555 10445 2.57 LINK ZN ZN A 305 O HOH A 586 1555 1555 2.47 LINK ZN ZN A 305 O HOH A 586 1555 10445 2.47 LINK O4 PNK A 306 ZN ZN A 307 1555 1555 2.50 LINK N1 PNK A 306 ZN ZN A 308 1555 1555 2.31 LINK O2 PNK A 306 ZN ZN A 308 1555 1555 2.26 LINK ZN ZN A 307 O HOH A 401 1555 1555 1.85 LINK ZN ZN A 308 O HOH A 401 1555 1555 2.26 CRYST1 104.759 104.759 98.434 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009546 0.005511 0.000000 0.00000 SCALE2 0.000000 0.011022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010159 0.00000