HEADER IMMUNE SYSTEM 16-AUG-19 6U1T TITLE CRYSTAL STRUCTURE OF ANTI-NIPAH VIRUS (NIV) F 5B3 ANTIBODY FAB TITLE 2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIGEN-BINDING (FAB) FRAGMENT, HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIGEN-BINDING (FAB) FRAGMENT, LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL: HYBRIDOMA; SOURCE 6 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM_CELL: HYBRIDOMA; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 CELL: HYBRIDOMA; SOURCE 15 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 18 EXPRESSION_SYSTEM_CELL: HYBRIDOMA KEYWDS NIPAH VIRUS, HENDRA VIRUS, HENIPAVIRUS, FUSION GLYCOPROTEIN, ANTIBODY KEYWDS 2 NEUTRALIZATION, FAB, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.V.DANG,Y.P.CHAN,Y.J.PARK,J.SNIJDER,S.C.DA SILVA,B.VU,L.YAN, AUTHOR 2 Y.R.FENG,B.ROCKX,T.GEISBERT,C.MIRE,C.E.MIRE,C.C.BBRODER,D.VEESLER, AUTHOR 3 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 16-OCT-24 6U1T 1 REMARK REVDAT 5 11-OCT-23 6U1T 1 REMARK REVDAT 4 01-JAN-20 6U1T 1 REMARK REVDAT 3 27-NOV-19 6U1T 1 JRNL REVDAT 2 13-NOV-19 6U1T 1 JRNL REVDAT 1 09-OCT-19 6U1T 0 JRNL AUTH H.V.DANG,Y.P.CHAN,Y.J.PARK,J.SNIJDER,S.C.DA SILVA,B.VU, JRNL AUTH 2 L.YAN,Y.R.FENG,B.ROCKX,T.W.GEISBERT,C.E.MIRE,C.C.BRODER, JRNL AUTH 3 D.VEESLER JRNL TITL AN ANTIBODY AGAINST THE F GLYCOPROTEIN INHIBITS NIPAH AND JRNL TITL 2 HENDRA VIRUS INFECTIONS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 980 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31570878 JRNL DOI 10.1038/S41594-019-0308-9 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 79965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4238 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5659 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 304 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 557 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.94000 REMARK 3 B22 (A**2) : 3.27000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.593 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3736 ; 0.007 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3253 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5190 ; 1.220 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7740 ; 0.910 ; 1.636 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ;14.480 ; 5.276 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;30.144 ;23.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 606 ;11.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.125 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4739 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 733 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6989 ; 3.225 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 71 ;41.884 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7335 ;23.320 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 118 REMARK 3 ORIGIN FOR THE GROUP (A): 68.2760 62.0804 56.2965 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0002 REMARK 3 T33: 0.0157 T12: 0.0000 REMARK 3 T13: 0.0005 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0373 L22: 0.0101 REMARK 3 L33: 0.0211 L12: 0.0048 REMARK 3 L13: 0.0213 L23: 0.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0006 S13: 0.0016 REMARK 3 S21: 0.0002 S22: 0.0011 S23: 0.0006 REMARK 3 S31: -0.0008 S32: 0.0008 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 119 H 221 REMARK 3 ORIGIN FOR THE GROUP (A): 57.6736 63.6875 21.2859 REMARK 3 T TENSOR REMARK 3 T11: 0.0429 T22: 0.0010 REMARK 3 T33: 0.0165 T12: -0.0005 REMARK 3 T13: -0.0003 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0102 L22: 0.0182 REMARK 3 L33: 0.0215 L12: -0.0110 REMARK 3 L13: 0.0067 L23: -0.0174 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.0012 S13: 0.0012 REMARK 3 S21: -0.0007 S22: -0.0008 S23: 0.0006 REMARK 3 S31: 0.0004 S32: 0.0029 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 110 REMARK 3 ORIGIN FOR THE GROUP (A): 59.7878 82.5931 53.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.0004 REMARK 3 T33: 0.0160 T12: -0.0001 REMARK 3 T13: 0.0004 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0176 L22: 0.0148 REMARK 3 L33: 0.0354 L12: -0.0050 REMARK 3 L13: -0.0015 L23: -0.0177 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0007 S13: -0.0003 REMARK 3 S21: -0.0003 S22: 0.0014 S23: -0.0011 REMARK 3 S31: -0.0002 S32: 0.0002 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 111 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1813 69.1400 23.4584 REMARK 3 T TENSOR REMARK 3 T11: 0.0434 T22: 0.0008 REMARK 3 T33: 0.0160 T12: 0.0001 REMARK 3 T13: 0.0001 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0200 L22: 0.0605 REMARK 3 L33: 0.0358 L12: 0.0340 REMARK 3 L13: 0.0198 L23: 0.0340 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0012 S13: -0.0003 REMARK 3 S21: -0.0037 S22: -0.0006 S23: -0.0008 REMARK 3 S31: 0.0004 S32: 0.0000 S33: 0.0007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6U1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84268 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 68.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.90400 REMARK 200 R SYM FOR SHELL (I) : 0.90400 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 6NB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M TRIS REMARK 280 HCL, PH 8.5 AND 20% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.06000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.06000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.50500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.60000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.06000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.50500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.60000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.06000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.50500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 65 CE NZ REMARK 470 THR H 136 OG1 CG2 REMARK 470 LYS H 210 CD CE NZ REMARK 470 LYS L 42 NZ REMARK 470 LYS L 103 CD CE NZ REMARK 470 LYS L 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA H 49 149.66 -172.09 REMARK 500 ALA L 51 -38.69 73.41 REMARK 500 VAL L 84 -158.93 -137.91 REMARK 500 LEU L 125 6.40 -67.94 REMARK 500 ASN L 190 -60.29 -108.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-20584 RELATED DB: EMDB REMARK 900 RELATED ID: 6TYS RELATED DB: PDB DBREF 6U1T H 1 221 PDB 6U1T 6U1T 1 221 DBREF 6U1T L 1 214 PDB 6U1T 6U1T 1 214 SEQRES 1 H 221 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 221 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 221 PHE THR PHE SER SER TYR ASP MET SER TRP VAL ARG GLN SEQRES 4 H 221 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA MET ILE SER SEQRES 5 H 221 SER GLY GLY SER TYR SER TYR TYR PRO ASP SER VAL LYS SEQRES 6 H 221 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 H 221 LEU TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 221 ALA MET TYR TYR CYS ALA ARG GLN GLY ASP TYR ALA TRP SEQRES 9 H 221 PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 221 ALA ALA SER THR THR ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 221 PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU SEQRES 12 H 221 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 221 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 221 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 221 SER SER SER VAL THR THR VAL SER SER THR TRP PRO SER SEQRES 16 H 221 GLU SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 221 THR LYS VAL ASP LYS LYS ILE GLN PRO ARG GLY PRO THR SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO ALA SER GLN SER ALA SEQRES 2 L 214 SER LEU GLY GLU SER VAL THR ILE THR CYS LEU ALA SER SEQRES 3 L 214 GLN THR ILE GLY THR TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS SER PRO GLN LEU LEU ILE TYR ALA ALA THR SEQRES 5 L 214 SER LEU ALA ASP GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR LYS PHE SER PHE LYS ILE SER SER LEU SEQRES 7 L 214 GLN ALA GLU ASP PHE VAL SER TYR TYR CYS GLN GLN PHE SEQRES 8 L 214 TYR SER THR PRO PHE THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS HET CL H 301 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *557(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASN H 74 LYS H 76 5 3 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 161 SER H 163 5 3 HELIX 5 AA5 PRO H 205 SER H 208 5 4 HELIX 6 AA6 GLN L 79 PHE L 83 5 5 HELIX 7 AA7 GLU L 123 SER L 127 5 5 HELIX 8 AA8 LYS L 183 ARG L 188 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA2 6 ALA H 92 GLN H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 SER H 58 TYR H 59 -1 O TYR H 59 N MET H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA3 4 ALA H 92 GLN H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA3 4 PHE H 105 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 AA4 4 SER H 125 LEU H 129 0 SHEET 2 AA4 4 SER H 140 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 AA4 4 LEU H 179 VAL H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 AA4 4 VAL H 168 THR H 170 -1 N HIS H 169 O SER H 185 SHEET 1 AA5 4 SER H 125 LEU H 129 0 SHEET 2 AA5 4 SER H 140 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 AA5 4 LEU H 179 VAL H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 AA5 4 VAL H 174 GLN H 176 -1 N GLN H 176 O LEU H 179 SHEET 1 AA6 3 THR H 156 TRP H 159 0 SHEET 2 AA6 3 THR H 199 HIS H 204 -1 O ASN H 201 N THR H 158 SHEET 3 AA6 3 THR H 209 LYS H 214 -1 O VAL H 211 N VAL H 202 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 LYS L 70 ILE L 75 -1 O PHE L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 GLY L 66 -1 N SER L 63 O LYS L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N GLN L 11 SHEET 3 AA8 6 SER L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 6 GLN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N GLN L 11 SHEET 3 AA9 4 SER L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 THR L 114 PHE L 118 0 SHEET 2 AB1 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 AB1 4 TYR L 173 THR L 182 -1 O MET L 175 N LEU L 136 SHEET 4 AB1 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 SER L 153 ARG L 155 0 SHEET 2 AB2 4 ASN L 145 ILE L 150 -1 N TRP L 148 O ARG L 155 SHEET 3 AB2 4 SER L 191 THR L 197 -1 O THR L 197 N ASN L 145 SHEET 4 AB2 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS H 133 CYS L 214 1555 1555 2.06 SSBOND 3 CYS H 145 CYS H 200 1555 1555 2.02 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.02 CISPEP 1 PHE H 151 PRO H 152 0 -9.66 CISPEP 2 GLU H 153 PRO H 154 0 0.87 CISPEP 3 TRP H 193 PRO H 194 0 12.63 CISPEP 4 GLY H 219 PRO H 220 0 8.42 CISPEP 5 SER L 7 PRO L 8 0 -3.99 CISPEP 6 SER L 7 PRO L 8 0 -6.20 CISPEP 7 THR L 94 PRO L 95 0 -2.89 CISPEP 8 TYR L 140 PRO L 141 0 5.99 SITE 1 AC1 3 SER H 52 GLY H 54 GLY H 55 CRYST1 78.120 95.010 137.200 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007289 0.00000