HEADER HYDROLASE 21-AUG-19 6U32 TITLE CRYSTAL STRUCTURE OF HALOTAG BOUND TO TETRAMETHYLRHODAMINE-HALOTAG TITLE 2 LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOTAG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 1831; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HALOTAG, HALOALKANE DEHALOGENASE, TETRAMETHYRHODAMINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.BERRO,E.R.SCHREITER REVDAT 4 11-OCT-23 6U32 1 REMARK REVDAT 3 09-JUN-21 6U32 1 JRNL REVDAT 2 28-APR-21 6U32 1 JRNL REVDAT 1 30-SEP-20 6U32 0 JRNL AUTH C.DEO,A.S.ABDELFATTAH,H.K.BHARGAVA,A.J.BERRO,N.FALCO, JRNL AUTH 2 H.FARRANTS,B.MOEYAERT,M.CHUPANOVA,L.D.LAVIS,E.R.SCHREITER JRNL TITL THE HALOTAG AS A GENERAL SCAFFOLD FOR FAR-RED TUNABLE JRNL TITL 2 CHEMIGENETIC INDICATORS. JRNL REF NAT.CHEM.BIOL. V. 17 718 2021 JRNL REFN ESSN 1552-4469 JRNL PMID 33795886 JRNL DOI 10.1038/S41589-021-00775-W REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 28449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2084 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2514 ; 0.030 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2293 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3440 ; 2.537 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5307 ; 1.366 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 6.227 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;30.697 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 371 ;13.524 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;23.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2787 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 535 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 295 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 86.862 59.990 10.573 REMARK 3 T TENSOR REMARK 3 T11: 0.1376 T22: 0.0524 REMARK 3 T33: 0.0060 T12: 0.0158 REMARK 3 T13: 0.0127 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.1208 L22: 0.7338 REMARK 3 L33: 2.4658 L12: 0.2896 REMARK 3 L13: 0.3302 L23: 0.2352 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.0319 S13: 0.0111 REMARK 3 S21: 0.0923 S22: 0.0069 S23: 0.0211 REMARK 3 S31: 0.2362 S32: 0.1386 S33: 0.0067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6U32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 58.435 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.97700 REMARK 200 R SYM FOR SHELL (I) : 0.97700 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UY1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS PH 8.5, 20% PEG REMARK 280 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.08450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.26500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.12675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.26500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.04225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.26500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.26500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.12675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.26500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.26500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.04225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.08450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 SER A 296 REMARK 465 GLY A 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 539 O HOH A 565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 99 CD GLU A 99 OE2 0.075 REMARK 500 GLY A 125 C GLY A 125 O 0.098 REMARK 500 THR A 154 C THR A 154 O 0.121 REMARK 500 TRP A 289 CE3 TRP A 289 CZ3 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 31 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 73 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 86 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 THR A 155 CA - CB - CG2 ANGL. DEV. = -13.6 DEGREES REMARK 500 ASP A 156 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 HIS A 230 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 46.23 -84.86 REMARK 500 PRO A 42 51.83 -113.55 REMARK 500 THR A 43 -159.99 -102.16 REMARK 500 GLU A 98 -88.95 -105.71 REMARK 500 ASP A 106 -125.98 55.06 REMARK 500 ARG A 153 36.33 -86.36 REMARK 500 VAL A 245 -73.05 -134.03 REMARK 500 LEU A 271 -95.64 -119.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 188 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PVY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 DBREF 6U32 A 1 297 PDB 6U32 6U32 1 297 SEQRES 1 A 297 MET ALA GLU ILE GLY THR GLY PHE PRO PHE ASP PRO HIS SEQRES 2 A 297 TYR VAL GLU VAL LEU GLY GLU ARG MET HIS TYR VAL ASP SEQRES 3 A 297 VAL GLY PRO ARG ASP GLY THR PRO VAL LEU PHE LEU HIS SEQRES 4 A 297 GLY ASN PRO THR SER SER TYR VAL TRP ARG ASN ILE ILE SEQRES 5 A 297 PRO HIS VAL ALA PRO THR HIS ARG CYS ILE ALA PRO ASP SEQRES 6 A 297 LEU ILE GLY MET GLY LYS SER ASP LYS PRO ASP LEU GLY SEQRES 7 A 297 TYR PHE PHE ASP ASP HIS VAL ARG PHE MET ASP ALA PHE SEQRES 8 A 297 ILE GLU ALA LEU GLY LEU GLU GLU VAL VAL LEU VAL ILE SEQRES 9 A 297 HIS ASP TRP GLY SER ALA LEU GLY PHE HIS TRP ALA LYS SEQRES 10 A 297 ARG ASN PRO GLU ARG VAL LYS GLY ILE ALA PHE MET GLU SEQRES 11 A 297 PHE ILE ARG PRO ILE PRO THR TRP ASP GLU TRP PRO GLU SEQRES 12 A 297 PHE ALA ARG GLU THR PHE GLN ALA PHE ARG THR THR ASP SEQRES 13 A 297 VAL GLY ARG LYS LEU ILE ILE ASP GLN ASN VAL PHE ILE SEQRES 14 A 297 GLU GLY THR LEU PRO MET GLY VAL VAL ARG PRO LEU THR SEQRES 15 A 297 GLU VAL GLU MET ASP HIS TYR ARG GLU PRO PHE LEU ASN SEQRES 16 A 297 PRO VAL ASP ARG GLU PRO LEU TRP ARG PHE PRO ASN GLU SEQRES 17 A 297 LEU PRO ILE ALA GLY GLU PRO ALA ASN ILE VAL ALA LEU SEQRES 18 A 297 VAL GLU GLU TYR MET ASP TRP LEU HIS GLN SER PRO VAL SEQRES 19 A 297 PRO LYS LEU LEU PHE TRP GLY THR PRO GLY VAL LEU ILE SEQRES 20 A 297 PRO PRO ALA GLU ALA ALA ARG LEU ALA LYS SER LEU PRO SEQRES 21 A 297 ASN CYS LYS ALA VAL ASP ILE GLY PRO GLY LEU ASN LEU SEQRES 22 A 297 LEU GLN GLU ASP ASN PRO ASP LEU ILE GLY SER GLU ILE SEQRES 23 A 297 ALA ARG TRP LEU SER THR LEU GLU ILE SER GLY HET PVY A 301 76 HET CL A 302 1 HETNAM PVY 9-[2-CARBOXY-5-({2-[2-(HEXYLOXY) HETNAM 2 PVY ETHOXY]ETHYL}CARBAMOYL)PHENYL]-6-(DIMETHYLAMINO)-N,N- HETNAM 3 PVY DIMETHYL-3H-XANTHEN-3-IMINIUM HETNAM CL CHLORIDE ION FORMUL 2 PVY C35 H44 N3 O6 1+ FORMUL 3 CL CL 1- FORMUL 4 HOH *177(H2 O) HELIX 1 AA1 SER A 44 ARG A 49 5 6 HELIX 2 AA2 ILE A 51 ALA A 56 1 6 HELIX 3 AA3 PHE A 80 LEU A 95 1 16 HELIX 4 AA4 ASP A 106 ASN A 119 1 14 HELIX 5 AA5 THR A 137 TRP A 141 5 5 HELIX 6 AA6 PRO A 142 PHE A 144 5 3 HELIX 7 AA7 ALA A 145 ARG A 153 1 9 HELIX 8 AA8 THR A 155 ILE A 163 1 9 HELIX 9 AA9 ASN A 166 GLY A 171 1 6 HELIX 10 AB1 LEU A 173 VAL A 177 5 5 HELIX 11 AB2 THR A 182 GLU A 191 1 10 HELIX 12 AB3 PRO A 192 LEU A 194 5 3 HELIX 13 AB4 ASN A 195 ASP A 198 5 4 HELIX 14 AB5 ARG A 199 LEU A 209 1 11 HELIX 15 AB6 PRO A 215 SER A 232 1 18 HELIX 16 AB7 PRO A 248 LEU A 259 1 12 HELIX 17 AB8 LEU A 273 ASN A 278 1 6 HELIX 18 AB9 ASN A 278 LEU A 293 1 16 SHEET 1 AA1 8 HIS A 13 VAL A 17 0 SHEET 2 AA1 8 GLU A 20 VAL A 27 -1 O GLU A 20 N VAL A 17 SHEET 3 AA1 8 CYS A 61 PRO A 64 -1 O CYS A 61 N VAL A 27 SHEET 4 AA1 8 VAL A 35 LEU A 38 1 N PHE A 37 O ILE A 62 SHEET 5 AA1 8 VAL A 100 HIS A 105 1 O VAL A 101 N LEU A 36 SHEET 6 AA1 8 VAL A 123 MET A 129 1 O ALA A 127 N LEU A 102 SHEET 7 AA1 8 LYS A 236 PRO A 243 1 O LEU A 237 N PHE A 128 SHEET 8 AA1 8 CYS A 262 GLY A 270 1 O LYS A 263 N LEU A 238 LINK OD1 ASP A 106 CBO PVY A 301 1555 1555 1.44 CISPEP 1 ASN A 41 PRO A 42 0 3.88 CISPEP 2 GLU A 214 PRO A 215 0 -4.30 CISPEP 3 THR A 242 PRO A 243 0 1.97 SITE 1 AC1 11 ASP A 106 ALA A 145 THR A 148 PHE A 149 SITE 2 AC1 11 LEU A 161 VAL A 167 GLU A 170 GLY A 171 SITE 3 AC1 11 THR A 172 PRO A 174 MET A 175 SITE 1 AC2 3 ASN A 41 TRP A 107 PRO A 206 CRYST1 62.530 62.530 164.169 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006091 0.00000