HEADER TOXIN 21-AUG-19 6U33 TITLE STRUCTURE-BASED DISCOVERY OF A NOVEL SMALL-MOLECULE INHIBITOR OF TITLE 2 METHICILLIN-RESISTANT S. AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BI-COMPONENT LEUKOCIDIN LUKED SUBUNIT D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-327; COMPND 5 SYNONYM: GAMMA-HEMOLYSIN COMPONENT B,LEUCOTOXIN LUKD,LEUKOTOXIN LUKD, COMPND 6 LUKNF; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: LUKNF, LUKD, BTN44_02870, EP54_14125, EQ90_10595, ER624_13605, SOURCE 5 HMPREF3211_01500, NCTC10654_01892, NCTC13131_06007, RK64_09800; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS ALPHA-TOXIN, PVL, LEUKOCIDINS, MRSA, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,L.KOZHAYA,V.J.TORRES,D.UNUTMAZ,M.LU REVDAT 4 11-OCT-23 6U33 1 LINK REVDAT 3 13-MAY-20 6U33 1 JRNL REVDAT 2 01-APR-20 6U33 1 JRNL REVDAT 1 25-MAR-20 6U33 0 JRNL AUTH J.LIU,L.KOZHAYA,V.J.TORRES,D.UNUTMAZ,M.LU JRNL TITL STRUCTURE-BASED DISCOVERY OF A SMALL-MOLECULE INHIBITOR OF JRNL TITL 2 METHICILLIN-RESISTANTSTAPHYLOCOCCUS AUREUSVIRULENCE. JRNL REF J.BIOL.CHEM. V. 295 5944 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32179646 JRNL DOI 10.1074/JBC.RA120.012697 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 30471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1460 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 1.58000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.856 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2436 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3297 ; 1.875 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 6.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;41.668 ;25.512 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;14.481 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.093 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1882 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5200 -9.5500 1.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.2119 REMARK 3 T33: 0.1508 T12: 0.1096 REMARK 3 T13: 0.0538 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.0079 L22: 2.7057 REMARK 3 L33: 16.5690 L12: 0.8469 REMARK 3 L13: -0.2255 L23: -3.6258 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.0998 S13: -0.0809 REMARK 3 S21: 0.0085 S22: 0.0362 S23: -0.1706 REMARK 3 S31: 0.3670 S32: 0.6515 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4560 -7.6890 10.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.0386 T22: 0.2361 REMARK 3 T33: 0.0466 T12: 0.0533 REMARK 3 T13: 0.0288 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.3006 L22: 0.7478 REMARK 3 L33: 13.0862 L12: 0.3775 REMARK 3 L13: -3.2548 L23: -1.6114 REMARK 3 S TENSOR REMARK 3 S11: -0.0848 S12: -0.2980 S13: -0.0416 REMARK 3 S21: -0.0930 S22: 0.0700 S23: -0.0381 REMARK 3 S31: 0.2910 S32: 0.8284 S33: 0.0147 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5570 -4.4960 8.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.1727 REMARK 3 T33: 0.0580 T12: 0.0298 REMARK 3 T13: 0.0319 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.2470 L22: 0.7214 REMARK 3 L33: 12.2570 L12: 0.8698 REMARK 3 L13: -4.9582 L23: -2.4452 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: -0.2524 S13: -0.0434 REMARK 3 S21: -0.0554 S22: 0.0343 S23: -0.0346 REMARK 3 S31: 0.2143 S32: 0.5690 S33: 0.0156 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1570 -6.3010 18.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.0732 T22: 0.1145 REMARK 3 T33: 0.0837 T12: 0.0089 REMARK 3 T13: 0.0399 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.0938 L22: 0.7201 REMARK 3 L33: 7.1091 L12: 1.4107 REMARK 3 L13: -4.5630 L23: -2.0142 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.1750 S13: 0.0054 REMARK 3 S21: -0.0062 S22: -0.0208 S23: 0.0084 REMARK 3 S31: 0.0655 S32: 0.2709 S33: 0.0129 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5460 -1.8660 26.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.1375 REMARK 3 T33: 0.1071 T12: 0.0084 REMARK 3 T13: 0.0361 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.3992 L22: 0.7589 REMARK 3 L33: 3.9099 L12: 1.2400 REMARK 3 L13: -2.7971 L23: -1.2152 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: -0.1974 S13: 0.0499 REMARK 3 S21: 0.0835 S22: -0.0725 S23: 0.0008 REMARK 3 S31: -0.0985 S32: 0.2021 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -29.9580 4.1410 5.7330 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.0526 REMARK 3 T33: 0.0413 T12: 0.0333 REMARK 3 T13: 0.0482 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 12.7321 L22: 3.1663 REMARK 3 L33: 2.5019 L12: 4.9442 REMARK 3 L13: -3.7286 L23: -0.7796 REMARK 3 S TENSOR REMARK 3 S11: 0.2173 S12: 0.3240 S13: 0.3996 REMARK 3 S21: -0.1420 S22: 0.0155 S23: 0.0251 REMARK 3 S31: -0.3138 S32: -0.2519 S33: -0.2328 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4790 -5.2690 -0.4920 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1836 REMARK 3 T33: 0.0795 T12: -0.0447 REMARK 3 T13: 0.0495 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 5.3129 L22: 0.4725 REMARK 3 L33: 5.8859 L12: 0.7626 REMARK 3 L13: -5.4475 L23: -1.1081 REMARK 3 S TENSOR REMARK 3 S11: -0.2461 S12: 0.3272 S13: -0.2259 REMARK 3 S21: -0.1465 S22: 0.0344 S23: -0.0217 REMARK 3 S31: 0.3297 S32: -0.3200 S33: 0.2117 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): -29.7350 -3.4760 -3.6310 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: 0.2847 REMARK 3 T33: 0.0087 T12: 0.0027 REMARK 3 T13: -0.0022 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 8.6436 L22: 10.1794 REMARK 3 L33: 7.3565 L12: 7.7873 REMARK 3 L13: -6.1703 L23: -2.5055 REMARK 3 S TENSOR REMARK 3 S11: -0.1399 S12: 0.8300 S13: 0.0966 REMARK 3 S21: -0.1605 S22: 0.2662 S23: 0.0229 REMARK 3 S31: 0.0643 S32: -1.0324 S33: -0.1263 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4420 -8.3920 3.7490 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.1047 REMARK 3 T33: 0.0858 T12: -0.0310 REMARK 3 T13: 0.0576 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 5.0638 L22: 1.2509 REMARK 3 L33: 6.9479 L12: 1.1996 REMARK 3 L13: -5.5095 L23: -1.0904 REMARK 3 S TENSOR REMARK 3 S11: -0.4737 S12: 0.1890 S13: -0.3428 REMARK 3 S21: -0.1418 S22: 0.1061 S23: -0.1113 REMARK 3 S31: 0.4810 S32: -0.1533 S33: 0.3676 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): -35.2770 5.4650 13.1530 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.1484 REMARK 3 T33: 0.1104 T12: 0.0451 REMARK 3 T13: 0.0546 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.6067 L22: 6.1922 REMARK 3 L33: 3.4283 L12: 3.1674 REMARK 3 L13: -2.4570 L23: -1.4365 REMARK 3 S TENSOR REMARK 3 S11: 0.0917 S12: -0.0067 S13: 0.0739 REMARK 3 S21: -0.1404 S22: 0.0305 S23: -0.0501 REMARK 3 S31: -0.2554 S32: -0.0620 S33: -0.1222 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -38.4540 -0.0680 15.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.1147 REMARK 3 T33: 0.0737 T12: 0.0108 REMARK 3 T13: 0.0262 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 9.2304 L22: 2.8154 REMARK 3 L33: 3.0089 L12: 4.8758 REMARK 3 L13: -4.5707 L23: -2.2055 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: 0.0289 S13: 0.0964 REMARK 3 S21: -0.0742 S22: -0.0329 S23: 0.0158 REMARK 3 S31: -0.0936 S32: -0.1697 S33: 0.0434 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): -53.1050 -4.8620 21.4160 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.4105 REMARK 3 T33: 0.1272 T12: 0.0390 REMARK 3 T13: 0.0335 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 3.6631 L22: 5.9982 REMARK 3 L33: 4.5965 L12: 3.5921 REMARK 3 L13: 3.1013 L23: 0.8838 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.1065 S13: 0.2095 REMARK 3 S21: -0.0899 S22: 0.0312 S23: 0.4202 REMARK 3 S31: 0.0660 S32: -0.3892 S33: -0.0421 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): -55.4540 3.2270 26.9980 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.1697 REMARK 3 T33: 0.0867 T12: 0.0326 REMARK 3 T13: 0.0389 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 12.2408 L22: 9.5429 REMARK 3 L33: 10.9403 L12: -3.4938 REMARK 3 L13: -4.6113 L23: -2.7162 REMARK 3 S TENSOR REMARK 3 S11: 0.6229 S12: 0.2310 S13: 0.3894 REMARK 3 S21: 0.0226 S22: -0.1632 S23: 0.0278 REMARK 3 S31: -0.7201 S32: -0.3873 S33: -0.4597 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): -56.1340 -2.6770 29.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.3163 REMARK 3 T33: 0.2071 T12: -0.0218 REMARK 3 T13: -0.0041 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.9455 L22: 2.5233 REMARK 3 L33: 4.6082 L12: -1.3520 REMARK 3 L13: -2.0652 L23: 2.7201 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.1511 S13: -0.0443 REMARK 3 S21: -0.1318 S22: 0.0086 S23: 0.3399 REMARK 3 S31: 0.0087 S32: -0.3840 S33: -0.0258 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): -56.7300 -9.7030 31.2480 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.2592 REMARK 3 T33: 0.1243 T12: -0.0194 REMARK 3 T13: 0.0521 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 6.4703 L22: 3.9324 REMARK 3 L33: 2.4419 L12: 1.8231 REMARK 3 L13: -3.9112 L23: -0.6592 REMARK 3 S TENSOR REMARK 3 S11: -0.2928 S12: 0.4686 S13: -0.0818 REMARK 3 S21: -0.0882 S22: 0.1851 S23: 0.0578 REMARK 3 S31: 0.2081 S32: -0.3001 S33: 0.1077 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): -47.9780 -14.2910 29.2530 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.1167 REMARK 3 T33: 0.1188 T12: -0.0262 REMARK 3 T13: 0.0607 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.8124 L22: 1.2016 REMARK 3 L33: 2.5740 L12: 0.8718 REMARK 3 L13: -1.7833 L23: -0.0631 REMARK 3 S TENSOR REMARK 3 S11: -0.1632 S12: 0.0124 S13: -0.2052 REMARK 3 S21: -0.0319 S22: -0.0389 S23: -0.0907 REMARK 3 S31: 0.2275 S32: -0.0860 S33: 0.2021 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): -23.1640 -0.8020 9.1750 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.1452 REMARK 3 T33: 0.0838 T12: -0.0105 REMARK 3 T13: 0.0492 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 4.9643 L22: 2.1267 REMARK 3 L33: 5.9516 L12: 2.5857 REMARK 3 L13: -4.7466 L23: -2.6285 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: -0.2314 S13: 0.0852 REMARK 3 S21: -0.0479 S22: -0.0655 S23: 0.0142 REMARK 3 S31: -0.0859 S32: 0.4580 S33: -0.0416 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 236 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): -33.9550 -0.3760 26.0200 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.1578 REMARK 3 T33: 0.0739 T12: 0.0009 REMARK 3 T13: 0.0316 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.5787 L22: 0.6288 REMARK 3 L33: 3.9887 L12: 0.9201 REMARK 3 L13: -3.5224 L23: -0.6843 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: -0.2083 S13: 0.1703 REMARK 3 S21: 0.0279 S22: -0.0010 S23: 0.0261 REMARK 3 S31: -0.0954 S32: 0.2271 S33: -0.1028 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): -51.3550 -1.8140 33.7370 REMARK 3 T TENSOR REMARK 3 T11: 0.0557 T22: 0.1429 REMARK 3 T33: 0.0866 T12: 0.0346 REMARK 3 T13: 0.0482 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 5.8405 L22: 2.6966 REMARK 3 L33: 2.1708 L12: 3.5601 REMARK 3 L13: -1.5908 L23: -0.6241 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: 0.2173 S13: 0.3964 REMARK 3 S21: 0.0814 S22: 0.0598 S23: 0.2315 REMARK 3 S31: -0.1058 S32: -0.2337 S33: -0.1111 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6020 0.8070 17.9520 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.2669 REMARK 3 T33: 0.0666 T12: -0.0270 REMARK 3 T13: 0.0284 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 6.4211 L22: 0.3294 REMARK 3 L33: 4.8965 L12: -0.0611 REMARK 3 L13: -4.2524 L23: 0.3885 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.3417 S13: 0.0125 REMARK 3 S21: 0.0077 S22: 0.1129 S23: -0.0644 REMARK 3 S31: -0.0989 S32: 0.6457 S33: -0.0855 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7800 -0.7220 23.3490 REMARK 3 T TENSOR REMARK 3 T11: 0.0541 T22: 0.4847 REMARK 3 T33: 0.0972 T12: -0.0135 REMARK 3 T13: 0.0256 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 7.3195 L22: 0.3885 REMARK 3 L33: 5.1454 L12: 0.8694 REMARK 3 L13: -2.2406 L23: 0.4606 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.7699 S13: -0.4339 REMARK 3 S21: 0.0153 S22: -0.0755 S23: -0.1162 REMARK 3 S31: -0.1802 S32: 0.6030 S33: 0.0614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6U33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 57.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1LKF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 MG/ML PROTEIN IN 10 MM SODIUM REMARK 280 ACETATE, PH 5.4 AGAINST RESERVOIR SOLUTION OF 20% PEG2000 MME, REMARK 280 10 MM NICKEL CHLORIDE, 0.1 M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.80550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.36600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.80550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.36600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 646 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 HIS A 3 REMARK 465 GLY A 300 REMARK 465 VAL A 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 150 O HOH A 501 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 182 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 218 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 251 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 251 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 91 112.01 -168.00 REMARK 500 GLN A 146 40.26 -153.41 REMARK 500 SER A 148 -4.80 85.28 REMARK 500 HIS A 169 -51.00 -132.38 REMARK 500 ARG A 258 -60.13 64.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 401 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 106 OE2 REMARK 620 2 HIS A 169 NE2 90.2 REMARK 620 3 HOH A 510 O 108.1 87.0 REMARK 620 4 HOH A 525 O 78.2 106.5 165.3 REMARK 620 5 HOH A 665 O 85.9 174.0 89.8 77.2 REMARK 620 6 HOH A 679 O 162.1 96.6 88.9 84.0 88.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U2S RELATED DB: PDB REMARK 900 BI-COMPONENT LEUKOCIDIN LUKED SUBUNIT D COMPLEXED WITH FOS-CHOLINE REMARK 900 14. DBREF 6U33 A 1 301 UNP Q93UU8 Q93UU8_STAAU 27 327 SEQRES 1 A 301 ALA GLN HIS ILE THR PRO VAL SER GLU LYS LYS VAL ASP SEQRES 2 A 301 ASP LYS ILE THR LEU TYR LYS THR THR ALA THR SER ASP SEQRES 3 A 301 ASN ASP LYS LEU ASN ILE SER GLN ILE LEU THR PHE ASN SEQRES 4 A 301 PHE ILE LYS ASP LYS SER TYR ASP LYS ASP THR LEU VAL SEQRES 5 A 301 LEU LYS ALA ALA GLY ASN ILE ASN SER GLY TYR LYS LYS SEQRES 6 A 301 PRO ASN PRO LYS ASP TYR ASN TYR SER GLN PHE TYR TRP SEQRES 7 A 301 GLY GLY LYS TYR ASN VAL SER VAL SER SER GLU SER ASN SEQRES 8 A 301 ASP ALA VAL ASN VAL VAL ASP TYR ALA PRO LYS ASN GLN SEQRES 9 A 301 ASN GLU GLU PHE GLN VAL GLN GLN THR LEU GLY TYR SER SEQRES 10 A 301 TYR GLY GLY ASP ILE ASN ILE SER ASN GLY LEU SER GLY SEQRES 11 A 301 GLY LEU ASN GLY SER LYS SER PHE SER GLU THR ILE ASN SEQRES 12 A 301 TYR LYS GLN GLU SER TYR ARG THR THR ILE ASP ARG LYS SEQRES 13 A 301 THR ASN HIS LYS SER ILE GLY TRP GLY VAL GLU ALA HIS SEQRES 14 A 301 LYS ILE MET ASN ASN GLY TRP GLY PRO TYR GLY ARG ASP SEQRES 15 A 301 SER TYR ASP PRO THR TYR GLY ASN GLU LEU PHE LEU GLY SEQRES 16 A 301 GLY ARG GLN SER SER SER ASN ALA GLY GLN ASN PHE LEU SEQRES 17 A 301 PRO THR HIS GLN MET PRO LEU LEU ALA ARG GLY ASN PHE SEQRES 18 A 301 ASN PRO GLU PHE ILE SER VAL LEU SER HIS LYS GLN ASN SEQRES 19 A 301 ASP THR LYS LYS SER LYS ILE LYS VAL THR TYR GLN ARG SEQRES 20 A 301 GLU MET ASP ARG TYR THR ASN GLN TRP ASN ARG LEU HIS SEQRES 21 A 301 TRP VAL GLY ASN ASN TYR LYS ASN GLN ASN THR VAL THR SEQRES 22 A 301 PHE THR SER THR TYR GLU VAL ASP TRP GLN ASN HIS THR SEQRES 23 A 301 VAL LYS LEU ILE GLY THR ASP SER LYS GLU THR ASN PRO SEQRES 24 A 301 GLY VAL HET NI A 401 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI NI 2+ FORMUL 3 HOH *217(H2 O) HELIX 1 AA1 LEU A 128 LEU A 132 5 5 HELIX 2 AA2 ASN A 202 ASN A 206 5 5 HELIX 3 AA3 PRO A 209 MET A 213 5 5 HELIX 4 AA4 PRO A 214 GLY A 219 1 6 SHEET 1 AA1 6 SER A 8 LYS A 11 0 SHEET 2 AA1 6 ILE A 16 ASN A 27 -1 O LEU A 18 N LYS A 10 SHEET 3 AA1 6 ILE A 32 ASP A 43 -1 O GLN A 34 N SER A 25 SHEET 4 AA1 6 LYS A 48 ASN A 60 -1 O THR A 50 N ILE A 41 SHEET 5 AA1 6 PHE A 225 LYS A 232 -1 O SER A 227 N LEU A 53 SHEET 6 AA1 6 VAL A 94 ALA A 100 -1 N ASP A 98 O VAL A 228 SHEET 1 AA2 5 SER A 8 LYS A 11 0 SHEET 2 AA2 5 ILE A 16 ASN A 27 -1 O LEU A 18 N LYS A 10 SHEET 3 AA2 5 ILE A 32 ASP A 43 -1 O GLN A 34 N SER A 25 SHEET 4 AA2 5 LYS A 48 ASN A 60 -1 O THR A 50 N ILE A 41 SHEET 5 AA2 5 ASN A 220 PHE A 221 -1 O PHE A 221 N ILE A 59 SHEET 1 AA3 6 TYR A 149 ILE A 153 0 SHEET 2 AA3 6 SER A 161 ALA A 168 -1 O GLY A 165 N THR A 152 SHEET 3 AA3 6 TYR A 73 GLU A 89 -1 N TYR A 82 O VAL A 166 SHEET 4 AA3 6 SER A 239 ASN A 257 -1 O GLU A 248 N LYS A 81 SHEET 5 AA3 6 HIS A 260 ASP A 281 -1 O VAL A 280 N SER A 239 SHEET 6 AA3 6 THR A 286 GLU A 296 -1 O THR A 286 N ASP A 281 SHEET 1 AA4 3 ILE A 122 ASN A 126 0 SHEET 2 AA4 3 GLN A 109 TYR A 116 -1 N GLY A 115 O ASN A 123 SHEET 3 AA4 3 PHE A 138 LYS A 145 -1 O TYR A 144 N VAL A 110 SHEET 1 AA5 2 ILE A 171 ASN A 173 0 SHEET 2 AA5 2 TRP A 176 TYR A 179 -1 O TRP A 176 N ASN A 173 LINK OE2 GLU A 106 NI NI A 401 1555 1555 2.16 LINK NE2 HIS A 169 NI NI A 401 1555 1555 2.01 LINK NI NI A 401 O HOH A 510 1555 1555 1.91 LINK NI NI A 401 O HOH A 525 1555 1555 1.94 LINK NI NI A 401 O HOH A 665 1555 1555 2.29 LINK NI NI A 401 O HOH A 679 1555 1555 2.22 CISPEP 1 ALA A 100 PRO A 101 0 -7.90 CISPEP 2 GLY A 177 PRO A 178 0 9.17 SITE 1 AC1 6 GLU A 106 HIS A 169 HOH A 510 HOH A 525 SITE 2 AC1 6 HOH A 665 HOH A 679 CRYST1 123.611 48.732 66.731 90.00 120.85 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008090 0.000000 0.004831 0.00000 SCALE2 0.000000 0.020520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017454 0.00000