HEADER TRANSLATION 22-AUG-19 6U43 TITLE CRYSTAL STRUCTURE OF METHANOPEREDENS NITROREDUCENS ELONGATION FACTOR 2 TITLE 2 H595N BOUND TO GMPPCP AND MAGNESIUM (TRICLINIC CRYSTAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EF-2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS METHANOPEREDENS NITROREDUCENS; SOURCE 3 ORGANISM_TAXID: 1392998; SOURCE 4 GENE: FUSA, ANME2D_00299; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS GTPASE, TRANSLATION, RIBOSOMAL TRANSLOCASE, ELONGATION EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,S.E.EALICK REVDAT 2 11-OCT-23 6U43 1 LINK REVDAT 1 18-MAR-20 6U43 0 JRNL AUTH M.K.FENWICK,S.E.EALICK JRNL TITL STRUCTURAL BASIS OF ELONGATION FACTOR 2 SWITCHING JRNL REF CURR RES STRUCT BIOL V. 2 25 2020 JRNL REFN ESSN 2665-928X JRNL DOI 10.1016/J.CRSTBI.2020.02.001 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3211 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 131860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 6514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.2640 - 4.3494 0.93 4348 193 0.1568 0.1670 REMARK 3 2 4.3494 - 3.4524 0.93 4316 215 0.1390 0.1465 REMARK 3 3 3.4524 - 3.0161 0.91 4223 210 0.1545 0.1750 REMARK 3 4 3.0161 - 2.7403 0.94 4309 260 0.1642 0.2107 REMARK 3 5 2.7403 - 2.5439 0.95 4401 242 0.1623 0.2005 REMARK 3 6 2.5439 - 2.3939 0.89 4105 206 0.1558 0.1875 REMARK 3 7 2.3939 - 2.2740 0.91 4234 233 0.1485 0.1788 REMARK 3 8 2.2740 - 2.1750 0.93 4295 209 0.1457 0.1812 REMARK 3 9 2.1750 - 2.0913 0.94 4307 240 0.1472 0.1940 REMARK 3 10 2.0913 - 2.0191 0.94 4356 233 0.1656 0.1872 REMARK 3 11 2.0191 - 1.9560 0.94 4288 256 0.1578 0.1866 REMARK 3 12 1.9560 - 1.9001 0.89 4098 195 0.1575 0.1787 REMARK 3 13 1.9001 - 1.8501 0.90 4228 207 0.1556 0.1942 REMARK 3 14 1.8501 - 1.8049 0.91 4240 195 0.1648 0.2142 REMARK 3 15 1.8049 - 1.7639 0.92 4263 208 0.1819 0.2117 REMARK 3 16 1.7639 - 1.7263 0.92 4292 224 0.1942 0.2175 REMARK 3 17 1.7263 - 1.6918 0.93 4275 226 0.2140 0.2434 REMARK 3 18 1.6918 - 1.6599 0.93 4331 210 0.2042 0.2385 REMARK 3 19 1.6599 - 1.6302 0.93 4246 234 0.1970 0.2214 REMARK 3 20 1.6302 - 1.6026 0.89 4168 200 0.2102 0.2597 REMARK 3 21 1.6026 - 1.5767 0.91 4196 212 0.2120 0.2663 REMARK 3 22 1.5767 - 1.5525 0.91 4217 207 0.2250 0.2708 REMARK 3 23 1.5525 - 1.5297 0.92 4262 214 0.2394 0.2641 REMARK 3 24 1.5297 - 1.5081 0.91 4239 210 0.2408 0.2917 REMARK 3 25 1.5081 - 1.4877 0.91 4194 251 0.2634 0.3311 REMARK 3 26 1.4877 - 1.4684 0.91 4185 246 0.2921 0.2887 REMARK 3 27 1.4684 - 1.4500 0.90 4164 212 0.3139 0.3416 REMARK 3 28 1.4500 - 1.4326 0.89 4066 221 0.3429 0.3669 REMARK 3 29 1.4326 - 1.4159 0.75 3500 181 0.3878 0.4290 REMARK 3 30 1.4159 - 1.4000 0.65 3000 164 0.4327 0.4293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131884 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 56.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SACCHAROMYCES CEREVISIAE EF-2 (PDB ENTRY 1N0V) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.1-7.6, 200 MM REMARK 280 AMMONIUM SULFATE, 5-15 % (V/V) ISOPROPANOL, 16.5-20 % (W/V) REMARK 280 POLYETHYLENE GLYCOL (PEG) 4000, 9 MM GPPCP, AND 15 MM MGCL2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 ASP A -20 REMARK 465 LYS A -19 REMARK 465 ILE A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 LYS A 50 REMARK 465 GLU A 51 REMARK 465 LEU A 52 REMARK 465 ALA A 53 REMARK 465 GLY A 54 REMARK 465 GLU A 55 REMARK 465 GLN A 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 165 CG CD OE1 NE2 REMARK 470 VAL A 386 CG1 CG2 REMARK 470 GLU A 427 CG CD OE1 OE2 REMARK 470 GLN A 512 CG CD OE1 NE2 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 GLN A 633 CG CD OE1 NE2 REMARK 470 ARG A 641 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 717 CG CD CE NZ REMARK 470 LEU A 718 CG CD1 CD2 REMARK 470 GLU A 719 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 319 O HOH A 901 1.98 REMARK 500 O HOH A 1541 O HOH A 1566 2.09 REMARK 500 O HOH A 964 O HOH A 1541 2.10 REMARK 500 O HOH A 1043 O HOH A 1541 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 163 C MET A 164 N 0.173 REMARK 500 GLU A 467 CD GLU A 467 OE1 -0.066 REMARK 500 GLU A 467 CD GLU A 467 OE2 -0.069 REMARK 500 GLU A 477 CD GLU A 477 OE2 -0.082 REMARK 500 GLU A 492 CD GLU A 492 OE2 -0.066 REMARK 500 GLU A 691 CD GLU A 691 OE1 -0.068 REMARK 500 GLU A 691 CD GLU A 691 OE2 -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 636 CB - CG - SD ANGL. DEV. = -23.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 216 0.35 -63.42 REMARK 500 THR A 428 -27.78 -141.51 REMARK 500 THR A 428 -24.69 -157.66 REMARK 500 ARG A 483 -1.36 70.11 REMARK 500 SER A 573 14.73 -151.85 REMARK 500 LEU A 718 42.38 -80.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 138 0.10 SIDE CHAIN REMARK 500 ARG A 191 0.12 SIDE CHAIN REMARK 500 ARG A 253 0.29 SIDE CHAIN REMARK 500 ARG A 384 0.24 SIDE CHAIN REMARK 500 ARG A 517 0.12 SIDE CHAIN REMARK 500 ARG A 679 0.07 SIDE CHAIN REMARK 500 ARG A 713 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 9 -11.39 REMARK 500 MET A 59 11.00 REMARK 500 GLN A 66 -10.06 REMARK 500 GLN A 66 -10.67 REMARK 500 GLN A 165 12.59 REMARK 500 ARG A 253 -12.43 REMARK 500 ARG A 253 -11.82 REMARK 500 THR A 428 12.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1706 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1707 DISTANCE = 7.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 35 OG1 REMARK 620 2 THR A 71 OG1 90.2 REMARK 620 3 GCP A 801 O2G 166.7 90.6 REMARK 620 4 GCP A 801 O1B 90.9 169.5 90.8 REMARK 620 5 HOH A1016 O 80.4 92.2 86.4 98.3 REMARK 620 6 HOH A1135 O 91.0 82.4 102.3 87.1 169.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GCP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 805 DBREF1 6U43 A 1 729 UNP A0A062V290_9EURY DBREF2 6U43 A A0A062V290 1 729 SEQADV 6U43 MET A -23 UNP A0A062V29 INITIATING METHIONINE SEQADV 6U43 GLY A -22 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 SER A -21 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 ASP A -20 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 LYS A -19 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 ILE A -18 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 HIS A -17 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 HIS A -16 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 HIS A -15 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 HIS A -14 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 HIS A -13 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 HIS A -12 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 SER A -11 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 SER A -10 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 GLY A -9 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 GLU A -8 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 ASN A -7 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 LEU A -6 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 TYR A -5 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 PHE A -4 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 GLN A -3 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 GLY A -2 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 SER A -1 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 GLY A 0 UNP A0A062V29 EXPRESSION TAG SEQADV 6U43 ASN A 595 UNP A0A062V29 HIS 595 ENGINEERED MUTATION SEQRES 1 A 753 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 753 SER GLY GLU ASN LEU TYR PHE GLN GLY SER GLY MET GLY SEQRES 3 A 753 ARG ARG LYS LYS MET VAL GLU ARG VAL THR THR LEU MET SEQRES 4 A 753 ASP LYS PRO GLU PHE ILE ARG ASN ILE GLY ILE VAL ALA SEQRES 5 A 753 HIS ILE ASP HIS GLY LYS THR THR LEU SER ASP ASN LEU SEQRES 6 A 753 LEU ALA GLY ALA GLY MET ILE SER LYS GLU LEU ALA GLY SEQRES 7 A 753 GLU GLN LEU PHE MET ASP PHE ASP GLU GLU GLU GLN LYS SEQRES 8 A 753 ARG GLY ILE THR ILE ASP SER ALA ASN VAL SER MET VAL SEQRES 9 A 753 HIS GLU TYR GLU GLY LYS GLU TYR LEU ILE ASN LEU ILE SEQRES 10 A 753 ASP THR PRO GLY HIS VAL ASP PHE GLY GLY ASP VAL THR SEQRES 11 A 753 ARG ALA MET ARG ALA VAL ASP GLY ALA VAL VAL VAL VAL SEQRES 12 A 753 ASP ALA VAL GLU GLY ALA MET PRO GLN THR GLU THR VAL SEQRES 13 A 753 LEU ARG GLN ALA LEU ARG GLU ASN VAL VAL PRO ILE LEU SEQRES 14 A 753 PHE ILE ASN LYS VAL ASP ARG LEU ILE MET GLU LEU LYS SEQRES 15 A 753 LEU THR PRO GLN ASP MET GLN ILE ARG LEU GLY ALA VAL SEQRES 16 A 753 ILE ASP LYS ILE ASN LYS LEU ILE LYS GLY MET LYS PRO SEQRES 17 A 753 ASP SER TYR ASP GLY LEU ARG LEU ASP ALA ALA VAL GLY SEQRES 18 A 753 LYS VAL ALA PHE GLY SER ALA LEU ASN ASN TRP ALA ILE SEQRES 19 A 753 SER VAL PRO PHE MET LYS LYS THR GLY ILE GLY PHE LYS SEQRES 20 A 753 GLU VAL ILE GLU TYR CYS MET GLU ASP GLN GLN GLN LYS SEQRES 21 A 753 LEU ALA GLU ARG CYS PRO LEU HIS ALA VAL VAL ASN ASP SEQRES 22 A 753 MET VAL ILE ARG PHE LEU PRO ASN PRO VAL GLN ALA GLN SEQRES 23 A 753 LYS GLU ARG ILE LYS VAL ILE TRP HIS GLY ASP LYS GLY SEQRES 24 A 753 SER GLU ILE GLY LYS SER MET ALA ASN VAL ASP PRO ASN SEQRES 25 A 753 GLY LYS VAL ALA LEU MET ILE THR ASP ILE SER THR ASP SEQRES 26 A 753 PRO HIS ALA GLY GLU VAL ALA THR GLY ARG LEU PHE SER SEQRES 27 A 753 GLY THR LEU GLU ARG GLY LYS GLU VAL TYR ILE SER GLY SEQRES 28 A 753 MET PRO ASN PRO ASN ARG ILE GLN GLN VAL GLY LEU PHE SEQRES 29 A 753 MET GLY PRO GLU ARG ILE GLU VAL ASP ARG ILE THR ALA SEQRES 30 A 753 GLY ASN ILE VAL ALA VAL THR GLY LEU ALA ASP ALA ILE SEQRES 31 A 753 VAL GLY SER THR ALA SER THR ASP LYS ALA MET VAL PRO SEQRES 32 A 753 PHE GLU SER ILE ARG HIS VAL SER GLU PRO VAL VAL THR SEQRES 33 A 753 VAL ALA VAL GLU ALA LYS HIS MET LYS ASP LEU PRO LYS SEQRES 34 A 753 LEU VAL GLU VAL LEU ARG GLN VAL ALA LYS GLU ASP PRO SEQRES 35 A 753 THR LEU LYS VAL THR ILE ASN GLN GLU THR GLY GLU HIS SEQRES 36 A 753 LEU LEU ALA GLY MET GLY GLU LEU HIS LEU GLU ILE VAL SEQRES 37 A 753 ALA HIS ARG ILE GLN ARG ASP LYS HIS VAL GLU ILE THR SEQRES 38 A 753 THR SER LYS PRO LEU VAL VAL TYR ARG GLU THR VAL SER SEQRES 39 A 753 ALA HIS ALA GLY PRO VAL GLU GLY LYS SER PRO ASN ARG SEQRES 40 A 753 HIS ASN ARG PHE TYR ILE GLU ILE GLU PRO LEU GLN PRO SEQRES 41 A 753 ALA ILE PHE GLU LEU VAL ARG ASN GLY GLU ILE SER MET SEQRES 42 A 753 LYS GLN GLN GLU VAL GLU ARG ARG ASP ILE LEU MET LYS SEQRES 43 A 753 ALA GLY MET SER LYS GLU GLU ALA LYS GLY ILE THR HIS SEQRES 44 A 753 ILE SER GLU ASN ASN ILE PHE ILE ASP MET THR LYS GLY SEQRES 45 A 753 ILE GLN TYR LEU ASN GLU THR MET GLU LEU VAL LEU GLU SEQRES 46 A 753 GLY PHE GLU GLU VAL ILE LYS GLY GLY PRO LEU SER ARG SEQRES 47 A 753 GLU PRO VAL MET GLY LEU LYS VAL LYS LEU MET ASP ALA SEQRES 48 A 753 LYS LEU HIS GLU ASP SER ILE ASN ARG GLY PRO ALA GLN SEQRES 49 A 753 VAL ILE PRO ALA SER ARG GLN ALA ILE GLN ALA ALA MET SEQRES 50 A 753 LEU MET ALA GLY ALA THR LEU LEU GLU PRO PHE GLN LYS SEQRES 51 A 753 VAL PHE ILE HIS VAL PRO GLN GLU GLN MET GLY GLY ALA SEQRES 52 A 753 MET ARG GLU ILE GLN GLY ARG ARG GLY ALA ILE LEU ASP SEQRES 53 A 753 MET LYS THR GLU GLY ASP THR THR ILE ILE GLU ALA LYS SEQRES 54 A 753 ALA PRO VAL ALA GLN LEU PHE GLY PHE ALA GLY ASP ILE SEQRES 55 A 753 ARG SER ALA THR GLU GLY ARG ALA MET TRP SER THR GLU SEQRES 56 A 753 PHE LEU GLY PHE GLU PRO ILE PRO ALA ASN MET LEU ALA SEQRES 57 A 753 GLU THR VAL MET GLY ILE ARG GLN ARG LYS GLY LEU LYS SEQRES 58 A 753 LEU GLU MET PRO LYS PRO SER ASP PHE ILE SER PRO HET GCP A 801 32 HET MG A 802 1 HET SO4 A 803 5 HET CL A 804 1 HET SO4 A 805 5 HETNAM GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 GCP C11 H18 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 CL CL 1- FORMUL 7 HOH *807(H2 O) HELIX 1 AA1 ARG A 3 ASP A 16 1 14 HELIX 2 AA2 LYS A 17 GLU A 19 5 3 HELIX 3 AA3 GLY A 33 ALA A 45 1 13 HELIX 4 AA4 ASP A 62 GLY A 69 1 8 HELIX 5 AA5 HIS A 98 ASP A 100 5 3 HELIX 6 AA6 PHE A 101 VAL A 112 1 12 HELIX 7 AA7 MET A 126 GLU A 139 1 14 HELIX 8 AA8 LYS A 149 GLU A 156 1 8 HELIX 9 AA9 THR A 160 LYS A 183 1 24 HELIX 10 AB1 SER A 186 ARG A 191 1 6 HELIX 11 AB2 SER A 211 GLY A 219 1 9 HELIX 12 AB3 GLY A 221 GLU A 231 1 11 HELIX 13 AB4 GLN A 233 CYS A 241 1 9 HELIX 14 AB5 PRO A 242 LEU A 255 1 14 HELIX 15 AB6 ASN A 257 TRP A 270 1 14 HELIX 16 AB7 SER A 276 ASN A 284 1 9 HELIX 17 AB8 HIS A 399 LYS A 401 5 3 HELIX 18 AB9 ASP A 402 ASP A 417 1 16 HELIX 19 AC1 GLY A 437 LYS A 452 1 16 HELIX 20 AC2 GLN A 495 ASN A 504 1 10 HELIX 21 AC3 GLN A 512 ALA A 523 1 12 HELIX 22 AC4 SER A 526 GLY A 532 1 7 HELIX 23 AC5 TYR A 551 GLY A 569 1 19 HELIX 24 AC6 ASP A 592 ARG A 596 5 5 HELIX 25 AC7 GLY A 597 ALA A 616 1 20 HELIX 26 AC8 GLN A 635 GLY A 645 1 11 HELIX 27 AC9 ALA A 669 LEU A 671 5 3 HELIX 28 AD1 GLY A 673 THR A 682 1 10 HELIX 29 AD2 PRO A 699 ASN A 701 5 3 HELIX 30 AD3 MET A 702 GLY A 715 1 14 HELIX 31 AD4 LYS A 722 PHE A 726 5 5 SHEET 1 AA1 7 ALA A 75 TYR A 83 0 SHEET 2 AA1 7 LYS A 86 ASP A 94 -1 O ILE A 90 N MET A 79 SHEET 3 AA1 7 ILE A 21 VAL A 27 1 N ILE A 24 O ASN A 91 SHEET 4 AA1 7 GLY A 114 ASP A 120 1 O VAL A 116 N GLY A 25 SHEET 5 AA1 7 VAL A 142 ASN A 148 1 O ILE A 144 N VAL A 117 SHEET 6 AA1 7 VAL A 199 SER A 203 1 O ALA A 200 N ILE A 147 SHEET 7 AA1 7 TRP A 208 ILE A 210 -1 O ILE A 210 N PHE A 201 SHEET 1 AA2 8 ASN A 332 ARG A 333 0 SHEET 2 AA2 8 GLU A 322 ILE A 325 -1 N VAL A 323 O ASN A 332 SHEET 3 AA2 8 THR A 370 SER A 372 -1 O SER A 372 N TYR A 324 SHEET 4 AA2 8 ALA A 292 ASP A 301 -1 N LEU A 293 O ALA A 371 SHEET 5 AA2 8 GLY A 305 SER A 314 -1 O GLY A 305 N ASP A 301 SHEET 6 AA2 8 ILE A 356 THR A 360 -1 O VAL A 359 N ALA A 308 SHEET 7 AA2 8 GLN A 336 MET A 341 -1 N GLY A 338 O ALA A 358 SHEET 8 AA2 8 GLU A 344 VAL A 348 -1 O GLU A 344 N MET A 341 SHEET 1 AA3 2 THR A 316 GLU A 318 0 SHEET 2 AA3 2 ARG A 350 THR A 352 -1 O ILE A 351 N LEU A 317 SHEET 1 AA4 4 LYS A 421 THR A 423 0 SHEET 2 AA4 4 HIS A 431 GLY A 435 -1 O ALA A 434 N LYS A 421 SHEET 3 AA4 4 VAL A 391 ALA A 397 -1 N VAL A 391 O GLY A 435 SHEET 4 AA4 4 ILE A 456 THR A 458 -1 O THR A 457 N GLU A 396 SHEET 1 AA5 4 LYS A 421 THR A 423 0 SHEET 2 AA5 4 HIS A 431 GLY A 435 -1 O ALA A 434 N LYS A 421 SHEET 3 AA5 4 VAL A 391 ALA A 397 -1 N VAL A 391 O GLY A 435 SHEET 4 AA5 4 LEU A 462 VAL A 463 -1 O LEU A 462 N THR A 392 SHEET 1 AA6 4 ARG A 466 THR A 468 0 SHEET 2 AA6 4 THR A 619 PRO A 632 -1 O LEU A 621 N ARG A 466 SHEET 3 AA6 4 THR A 659 PRO A 667 -1 O ILE A 662 N ILE A 629 SHEET 4 AA6 4 ALA A 649 GLU A 656 -1 N LEU A 651 O GLU A 663 SHEET 1 AA7 3 ARG A 466 THR A 468 0 SHEET 2 AA7 3 THR A 619 PRO A 632 -1 O LEU A 621 N ARG A 466 SHEET 3 AA7 3 MET A 687 PRO A 697 -1 O MET A 687 N HIS A 630 SHEET 1 AA8 5 ALA A 473 LYS A 479 0 SHEET 2 AA8 5 ARG A 486 PRO A 493 -1 O PHE A 487 N GLY A 478 SHEET 3 AA8 5 LEU A 580 LYS A 588 -1 O LYS A 583 N GLU A 490 SHEET 4 AA8 5 ILE A 541 ASP A 544 1 N ILE A 543 O VAL A 582 SHEET 5 AA8 5 ILE A 533 ILE A 536 -1 N THR A 534 O PHE A 542 LINK OG1 THR A 35 MG MG A 802 1555 1555 2.06 LINK OG1 THR A 71 MG MG A 802 1555 1555 2.11 LINK O2G GCP A 801 MG MG A 802 1555 1555 2.00 LINK O1B GCP A 801 MG MG A 802 1555 1555 2.11 LINK MG MG A 802 O HOH A1016 1555 1555 2.08 LINK MG MG A 802 O HOH A1135 1555 1555 2.07 CISPEP 1 GLY A 474 PRO A 475 0 3.19 SITE 1 AC1 29 ILE A 30 ASP A 31 HIS A 32 GLY A 33 SITE 2 AC1 29 LYS A 34 THR A 35 THR A 36 ILE A 70 SITE 3 AC1 29 THR A 71 GLY A 97 ASN A 148 LYS A 149 SITE 4 AC1 29 ASP A 151 ARG A 152 SER A 203 ALA A 204 SITE 5 AC1 29 LEU A 205 MG A 802 HOH A 967 HOH A1016 SITE 6 AC1 29 HOH A1066 HOH A1105 HOH A1118 HOH A1135 SITE 7 AC1 29 HOH A1145 HOH A1148 HOH A1286 HOH A1401 SITE 8 AC1 29 HOH A1409 SITE 1 AC2 5 THR A 35 THR A 71 GCP A 801 HOH A1016 SITE 2 AC2 5 HOH A1135 SITE 1 AC3 5 LYS A 177 HIS A 484 HOH A1165 HOH A1335 SITE 2 AC3 5 HOH A1496 SITE 1 AC4 3 GLN A 495 ILE A 498 LYS A 581 SITE 1 AC5 5 GLY A 673 ALA A 675 GLY A 676 HOH A 911 SITE 2 AC5 5 HOH A 923 CRYST1 57.195 62.524 63.396 64.21 69.68 80.51 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017484 -0.002921 -0.005785 0.00000 SCALE2 0.000000 0.016216 -0.007258 0.00000 SCALE3 0.000000 0.000000 0.018428 0.00000