HEADER TRANSFERASE 25-AUG-19 6U4B TITLE WBBM BIFUNCTIONAL GLYCOSYTRANSFERASE APO STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: WBBM PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: WBBM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A KEYWDS GLYCSOYLTRANSFERASE, BIFUNCTIONAL, TRIMERIC, WBBM, DUF4422, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.KIMBER,E.MALLETTE,E.R.KAMSKI-HENNEKAM,R.GITALIS REVDAT 3 13-MAR-24 6U4B 1 REMARK REVDAT 2 05-AUG-20 6U4B 1 JRNL LINK REVDAT 1 22-JAN-20 6U4B 0 JRNL AUTH B.R.CLARKE,O.G.OVCHINNIKOVA,R.P.SWEENEY,E.R.KAMSKI-HENNEKAM, JRNL AUTH 2 R.GITALIS,E.MALLETTE,S.D.KELLY,T.L.LOWARY,M.S.KIMBER, JRNL AUTH 3 C.WHITFIELD JRNL TITL A BIFUNCTIONAL O-ANTIGEN POLYMERASE STRUCTURE REVEALS A NEW JRNL TITL 2 GLYCOSYLTRANSFERASE FAMILY. JRNL REF NAT.CHEM.BIOL. V. 16 450 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32152541 JRNL DOI 10.1038/S41589-020-0494-0 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 37102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2800 - 4.9400 0.97 2730 144 0.1542 0.1633 REMARK 3 2 4.9400 - 3.9200 0.98 2713 143 0.1416 0.1776 REMARK 3 3 3.9200 - 3.4200 0.99 2706 143 0.1682 0.2141 REMARK 3 4 3.4200 - 3.1100 0.99 2707 142 0.1975 0.2302 REMARK 3 5 3.1100 - 2.8900 0.99 2706 142 0.2105 0.2702 REMARK 3 6 2.8900 - 2.7200 0.99 2731 144 0.2113 0.2606 REMARK 3 7 2.7200 - 2.5800 0.99 2684 142 0.2238 0.2569 REMARK 3 8 2.5800 - 2.4700 0.99 2730 143 0.2263 0.3333 REMARK 3 9 2.4700 - 2.3700 1.00 2717 144 0.2308 0.3055 REMARK 3 10 2.3700 - 2.2900 1.00 2685 140 0.2448 0.2694 REMARK 3 11 2.2900 - 2.2200 1.00 2711 142 0.2684 0.3290 REMARK 3 12 2.2200 - 2.1600 1.00 2734 144 0.2901 0.3439 REMARK 3 13 2.1600 - 2.1000 0.99 2693 142 0.3169 0.3788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.254 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4774 REMARK 3 ANGLE : 0.523 6470 REMARK 3 CHIRALITY : 0.043 692 REMARK 3 PLANARITY : 0.003 836 REMARK 3 DIHEDRAL : 17.829 2821 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 142.2000 18.6782 -14.8721 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.3397 REMARK 3 T33: 0.6405 T12: -0.0260 REMARK 3 T13: 0.0604 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 4.0330 L22: 4.4204 REMARK 3 L33: 1.8867 L12: -0.9277 REMARK 3 L13: 0.1651 L23: 0.5004 REMARK 3 S TENSOR REMARK 3 S11: 0.1713 S12: 0.1309 S13: -0.8180 REMARK 3 S21: 0.0281 S22: -0.0826 S23: 0.2993 REMARK 3 S31: 0.2537 S32: -0.2030 S33: -0.0930 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 130.2884 32.1083 -10.3125 REMARK 3 T TENSOR REMARK 3 T11: 0.2718 T22: 0.3939 REMARK 3 T33: 0.6010 T12: -0.0056 REMARK 3 T13: 0.0469 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 3.9861 L22: 2.8727 REMARK 3 L33: 1.9849 L12: 0.3229 REMARK 3 L13: -0.0763 L23: 0.7546 REMARK 3 S TENSOR REMARK 3 S11: 0.1355 S12: 0.0258 S13: -0.1082 REMARK 3 S21: 0.0337 S22: -0.1647 S23: 0.6657 REMARK 3 S31: 0.0369 S32: -0.3492 S33: 0.0554 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 157.4392 17.0496 -12.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.2913 T22: 0.2823 REMARK 3 T33: 0.6270 T12: -0.0189 REMARK 3 T13: 0.0280 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 5.6496 L22: 0.9972 REMARK 3 L33: 0.6102 L12: -0.9749 REMARK 3 L13: 0.4883 L23: 0.1586 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: 0.0953 S13: -0.2475 REMARK 3 S21: 0.0424 S22: -0.0272 S23: 0.2268 REMARK 3 S31: 0.0028 S32: -0.1395 S33: 0.0920 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 172.0030 9.9593 -9.7668 REMARK 3 T TENSOR REMARK 3 T11: 0.2979 T22: 0.3126 REMARK 3 T33: 0.4767 T12: -0.0180 REMARK 3 T13: 0.0589 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 3.1149 L22: 2.7239 REMARK 3 L33: 1.0034 L12: -0.1176 REMARK 3 L13: -0.3972 L23: -0.3322 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0935 S13: -0.0743 REMARK 3 S21: 0.1320 S22: -0.1251 S23: 0.2730 REMARK 3 S31: 0.1375 S32: -0.1155 S33: 0.1027 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 177.2146 -2.3650 -7.2508 REMARK 3 T TENSOR REMARK 3 T11: 0.3518 T22: 0.2761 REMARK 3 T33: 0.5705 T12: 0.0218 REMARK 3 T13: 0.0815 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 5.3005 L22: 2.1328 REMARK 3 L33: 2.1355 L12: -0.8666 REMARK 3 L13: 0.7886 L23: -1.0011 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.2463 S13: -0.6370 REMARK 3 S21: 0.1080 S22: -0.1313 S23: 0.0340 REMARK 3 S31: 0.3580 S32: 0.1287 S33: 0.1445 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 523 THROUGH 578 ) REMARK 3 ORIGIN FOR THE GROUP (A): 187.6068 18.3674 -2.3208 REMARK 3 T TENSOR REMARK 3 T11: 0.4181 T22: 0.4304 REMARK 3 T33: 0.6502 T12: -0.0095 REMARK 3 T13: 0.0310 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 3.6855 L22: 6.7349 REMARK 3 L33: 0.0098 L12: -3.5979 REMARK 3 L13: 0.3759 L23: 0.8426 REMARK 3 S TENSOR REMARK 3 S11: -0.3262 S12: -0.3940 S13: 0.3755 REMARK 3 S21: 0.7378 S22: 0.2556 S23: -0.0589 REMARK 3 S31: 0.0596 S32: 0.0575 S33: 0.0255 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37124 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.288 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.08000 REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL PRISMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MGCL, 0.1 M HEPES AND 30% V/V REMARK 280 PEG MME 550, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.52500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.52500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 310.07500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -107.41313 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 248.06000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 214.82626 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 601 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 ILE A 4 REMARK 465 MET A 5 REMARK 465 ASN A 6 REMARK 465 ASN A 354 REMARK 465 GLY A 355 REMARK 465 LEU A 579 REMARK 465 ALA A 580 REMARK 465 ALA A 581 REMARK 465 SER A 582 REMARK 465 ILE A 583 REMARK 465 GLY A 584 REMARK 465 LEU A 585 REMARK 465 THR A 586 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 60 -137.47 56.67 REMARK 500 ASP A 98 -152.24 -109.27 REMARK 500 GLU A 128 -79.05 -41.23 REMARK 500 ARG A 232 23.20 -74.01 REMARK 500 GLU A 352 43.27 -141.22 REMARK 500 ASP A 388 48.70 -88.93 REMARK 500 SER A 428 -169.32 -161.38 REMARK 500 LEU A 485 -130.26 57.06 REMARK 500 ASN A 506 69.24 -155.16 REMARK 500 ASN A 511 -142.95 58.00 REMARK 500 TYR A 541 48.64 -85.99 REMARK 500 ASN A 549 -35.42 -133.13 REMARK 500 GLU A 551 -35.19 72.32 REMARK 500 MET A 577 77.29 -65.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 386 OD2 REMARK 620 2 ASP A 388 OD1 104.2 REMARK 620 3 ASP A 388 OD2 149.1 49.4 REMARK 620 4 HIS A 540 NE2 94.1 89.6 100.6 REMARK 620 5 HOH A 866 O 118.1 122.0 76.1 122.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 565 OD1 REMARK 620 2 ASN A 565 OD1 0.0 REMARK 620 3 HOH A 718 O 107.7 107.7 REMARK 620 4 HOH A 718 O 89.6 89.6 79.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 DBREF 6U4B A 1 586 UNP Q48484 Q48484_KLEPN 1 586 SEQADV 6U4B MET A -19 UNP Q48484 INITIATING METHIONINE SEQADV 6U4B GLY A -18 UNP Q48484 EXPRESSION TAG SEQADV 6U4B SER A -17 UNP Q48484 EXPRESSION TAG SEQADV 6U4B SER A -16 UNP Q48484 EXPRESSION TAG SEQADV 6U4B HIS A -15 UNP Q48484 EXPRESSION TAG SEQADV 6U4B HIS A -14 UNP Q48484 EXPRESSION TAG SEQADV 6U4B HIS A -13 UNP Q48484 EXPRESSION TAG SEQADV 6U4B HIS A -12 UNP Q48484 EXPRESSION TAG SEQADV 6U4B HIS A -11 UNP Q48484 EXPRESSION TAG SEQADV 6U4B HIS A -10 UNP Q48484 EXPRESSION TAG SEQADV 6U4B SER A -9 UNP Q48484 EXPRESSION TAG SEQADV 6U4B SER A -8 UNP Q48484 EXPRESSION TAG SEQADV 6U4B GLY A -7 UNP Q48484 EXPRESSION TAG SEQADV 6U4B LEU A -6 UNP Q48484 EXPRESSION TAG SEQADV 6U4B VAL A -5 UNP Q48484 EXPRESSION TAG SEQADV 6U4B PRO A -4 UNP Q48484 EXPRESSION TAG SEQADV 6U4B ARG A -3 UNP Q48484 EXPRESSION TAG SEQADV 6U4B GLY A -2 UNP Q48484 EXPRESSION TAG SEQADV 6U4B SER A -1 UNP Q48484 EXPRESSION TAG SEQADV 6U4B HIS A 0 UNP Q48484 EXPRESSION TAG SEQRES 1 A 606 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 606 LEU VAL PRO ARG GLY SER HIS MET GLY ASN ILE MET ASN SEQRES 3 A 606 ASN SER VAL LYS ILE TYR THR SER HIS HIS LYS PRO SER SEQRES 4 A 606 ALA PHE LEU ASN ALA ALA ILE ILE LYS PRO LEU HIS VAL SEQRES 5 A 606 GLY LYS ALA ASN SER CYS ASN GLU ILE GLY CYS PRO GLY SEQRES 6 A 606 ASP ASP THR GLY ASP ASN ILE SER PHE LYS ASN PRO PHE SEQRES 7 A 606 TYR CYS GLU LEU THR ALA HIS TYR TRP VAL TRP LYS ASN SEQRES 8 A 606 GLU GLU LEU ALA ASP TYR VAL GLY PHE MET HIS TYR ARG SEQRES 9 A 606 ARG HIS LEU ASN PHE SER GLU LYS GLN THR PHE SER GLU SEQRES 10 A 606 ASP THR TRP GLY VAL VAL ASN HIS PRO CYS ILE ASP GLU SEQRES 11 A 606 GLU TYR GLU LYS ILE PHE GLY LEU ASN GLU GLU THR ILE SEQRES 12 A 606 GLN ARG CYS VAL GLU GLY ILE ASP ILE LEU LEU PRO LYS SEQRES 13 A 606 LYS TRP SER VAL THR ALA ALA GLY SER LYS ASN ASN TYR SEQRES 14 A 606 ASP HIS TYR GLU ARG GLY GLU TYR LEU HIS ILE ARG ASP SEQRES 15 A 606 TYR GLN ALA ALA ILE ALA ILE VAL GLU LYS LEU TYR PRO SEQRES 16 A 606 GLU TYR SER THR ALA ILE LYS THR PHE ASN ASP ALA SER SEQRES 17 A 606 ASP GLY TYR TYR THR ASN MET PHE VAL MET ARG LYS ASP SEQRES 18 A 606 ILE PHE VAL ASP TYR SER GLU TRP LEU PHE SER ILE LEU SEQRES 19 A 606 ASP ASN LEU GLU ASP ALA ILE SER MET ASN ASN TYR ASN SEQRES 20 A 606 ALA GLN GLU LYS ARG VAL ILE GLY HIS ILE ALA GLU ARG SEQRES 21 A 606 LEU PHE ASN ILE TYR ILE ILE LYS LEU GLN GLN ASP GLY SEQRES 22 A 606 GLU LEU LYS VAL LYS GLU LEU GLN ARG THR PHE VAL SER SEQRES 23 A 606 ASN GLU THR PHE ASN GLY ALA LEU ASN PRO VAL PHE ASP SEQRES 24 A 606 SER ALA VAL PRO VAL VAL ILE SER PHE ASP ASP ASN TYR SEQRES 25 A 606 ALA ILE SER GLY GLY ALA LEU ILE ASN SER ILE ILE ARG SEQRES 26 A 606 HIS ALA ASP LYS ASN LYS ASN TYR ASP ILE VAL VAL LEU SEQRES 27 A 606 GLU ASN LYS VAL SER TYR LEU ASN LYS THR ARG LEU VAL SEQRES 28 A 606 ASN LEU THR SER ALA HIS PRO ASN VAL SER LEU ARG PHE SEQRES 29 A 606 PHE ASP VAL ASN ALA PHE THR GLU ILE ASN GLY VAL HIS SEQRES 30 A 606 THR ARG ALA HIS PHE SER ALA SER THR TYR ALA ARG LEU SEQRES 31 A 606 PHE ILE PRO GLN LEU PHE ARG ARG TYR ASP LYS VAL VAL SEQRES 32 A 606 PHE ILE ASP SER ASP THR VAL VAL LYS ALA ASP LEU GLY SEQRES 33 A 606 GLU LEU LEU ASP VAL PRO LEU GLY ASN ASN LEU VAL ALA SEQRES 34 A 606 ALA VAL LYS ASP ILE VAL MET GLU GLY PHE VAL LYS PHE SEQRES 35 A 606 SER ALA MET SER ALA SER ASP ASP GLY VAL MET PRO ALA SEQRES 36 A 606 GLY GLU TYR LEU GLN LYS THR LEU ASN MET ASN ASN PRO SEQRES 37 A 606 ASP GLU TYR PHE GLN ALA GLY ILE ILE VAL PHE ASN VAL SEQRES 38 A 606 LYS GLN MET VAL GLU GLU ASN THR PHE ALA GLU LEU MET SEQRES 39 A 606 ARG VAL LEU LYS ALA LYS LYS TYR TRP PHE LEU ASP GLN SEQRES 40 A 606 ASP ILE MET ASN LYS VAL PHE TYR SER ARG VAL THR PHE SEQRES 41 A 606 LEU PRO LEU GLU TRP ASN VAL TYR HIS GLY ASN GLY ASN SEQRES 42 A 606 THR ASP ASP PHE PHE PRO ASN LEU LYS PHE ALA THR TYR SEQRES 43 A 606 MET LYS PHE LEU ALA ALA ARG LYS LYS PRO LYS MET ILE SEQRES 44 A 606 HIS TYR ALA GLY GLU ASN LYS PRO TRP ASN THR GLU LYS SEQRES 45 A 606 VAL ASP PHE TYR ASP ASP PHE ILE GLU ASN ILE ALA ASN SEQRES 46 A 606 THR PRO TRP GLU MET GLU ILE TYR LYS ARG GLN MET SER SEQRES 47 A 606 LEU ALA ALA SER ILE GLY LEU THR HET MG A 601 1 HET MG A 602 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 2(MG 2+) FORMUL 4 HOH *188(H2 O) HELIX 1 AA1 GLY A 33 SER A 37 5 5 HELIX 2 AA2 ILE A 52 PHE A 54 5 3 HELIX 3 AA3 LYS A 55 CYS A 60 1 6 HELIX 4 AA4 GLU A 61 GLU A 72 1 12 HELIX 5 AA5 ASP A 109 PHE A 116 1 8 HELIX 6 AA6 ASN A 119 VAL A 127 1 9 HELIX 7 AA7 ASN A 147 ARG A 154 1 8 HELIX 8 AA8 HIS A 159 TYR A 174 1 16 HELIX 9 AA9 TYR A 177 ALA A 187 1 11 HELIX 10 AB1 LYS A 200 ILE A 221 1 22 HELIX 11 AB2 GLN A 229 LYS A 231 5 3 HELIX 12 AB3 ARG A 232 GLY A 253 1 22 HELIX 13 AB4 TYR A 292 HIS A 306 1 15 HELIX 14 AB5 SER A 323 LEU A 333 1 11 HELIX 15 AB6 ASN A 348 ILE A 353 5 6 HELIX 16 AB7 TYR A 367 LEU A 370 5 4 HELIX 17 AB8 PHE A 371 PHE A 376 1 6 HELIX 18 AB9 ASP A 394 VAL A 401 5 8 HELIX 19 AC1 ASP A 413 PHE A 422 1 10 HELIX 20 AC2 PRO A 434 THR A 442 1 9 HELIX 21 AC3 ASN A 447 GLU A 450 5 4 HELIX 22 AC4 ASN A 460 ASN A 468 1 9 HELIX 23 AC5 ASN A 468 LYS A 480 1 13 HELIX 24 AC6 PHE A 484 PHE A 494 1 11 HELIX 25 AC7 PRO A 502 ASN A 506 5 5 HELIX 26 AC8 PHE A 517 LEU A 521 5 5 HELIX 27 AC9 LYS A 522 LYS A 535 1 14 HELIX 28 AD1 LYS A 546 GLU A 551 1 6 HELIX 29 AD2 PHE A 555 ALA A 564 1 10 HELIX 30 AD3 TRP A 568 MET A 577 1 10 SHEET 1 AA1 6 ILE A 27 HIS A 31 0 SHEET 2 AA1 6 VAL A 9 HIS A 15 1 N HIS A 15 O LEU A 30 SHEET 3 AA1 6 TYR A 77 HIS A 82 1 O MET A 81 N TYR A 12 SHEET 4 AA1 6 PHE A 196 ARG A 199 -1 O PHE A 196 N PHE A 80 SHEET 5 AA1 6 ILE A 132 PRO A 135 -1 N LEU A 133 O VAL A 197 SHEET 6 AA1 6 VAL A 257 LEU A 260 1 O LEU A 260 N LEU A 134 SHEET 1 AA2 2 VAL A 102 HIS A 105 0 SHEET 2 AA2 2 ARG A 262 VAL A 265 1 O ARG A 262 N VAL A 103 SHEET 1 AA3 2 TRP A 138 SER A 139 0 SHEET 2 AA3 2 ASP A 189 GLY A 190 -1 O GLY A 190 N TRP A 138 SHEET 1 AA4 7 VAL A 340 ASP A 346 0 SHEET 2 AA4 7 TYR A 313 ASN A 320 1 N TYR A 313 O SER A 341 SHEET 3 AA4 7 VAL A 282 ASP A 289 1 N ILE A 286 O LEU A 318 SHEET 4 AA4 7 VAL A 382 ILE A 385 1 O VAL A 383 N VAL A 285 SHEET 5 AA4 7 PHE A 452 PHE A 459 -1 O PHE A 459 N VAL A 382 SHEET 6 AA4 7 VAL A 408 LYS A 412 -1 N VAL A 411 O GLN A 453 SHEET 7 AA4 7 VAL A 498 LEU A 501 1 O LEU A 501 N ALA A 410 SHEET 1 AA5 3 THR A 389 VAL A 391 0 SHEET 2 AA5 3 MET A 538 HIS A 540 -1 O ILE A 539 N VAL A 390 SHEET 3 AA5 3 VAL A 507 TYR A 508 1 N VAL A 507 O HIS A 540 LINK OD2 ASP A 386 MG MG A 602 1555 1555 2.15 LINK OD1 ASP A 388 MG MG A 602 1555 1555 2.48 LINK OD2 ASP A 388 MG MG A 602 1555 1555 2.74 LINK NE2 HIS A 540 MG MG A 602 1555 1555 2.06 LINK OD1 ASN A 565 MG MG A 601 1555 1555 2.12 LINK OD1 ASN A 565 MG MG A 601 1555 3875 2.12 LINK MG MG A 601 O HOH A 718 1555 1555 2.11 LINK MG MG A 601 O HOH A 718 1555 3875 2.11 LINK MG MG A 602 O HOH A 866 1555 1555 2.84 SITE 1 AC1 2 ASN A 565 HOH A 718 SITE 1 AC2 4 ASP A 386 ASP A 388 HIS A 540 HOH A 866 CRYST1 124.030 124.030 73.050 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008063 0.004655 0.000000 0.00000 SCALE2 0.000000 0.009310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013689 0.00000