HEADER CELL ADHESION 26-AUG-19 6U4N TITLE SOLUTION STRUCTURE OF PAXILLIN LIM4 IN COMPLEX WITH KINDLIN-2 F0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERMITIN FAMILY HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KINDLIN-2,MITOGEN-INDUCIBLE GENE 2 PROTEIN,MIG-2,PLECKSTRIN COMPND 5 HOMOLOGY DOMAIN-CONTAINING FAMILY C MEMBER 1,PH DOMAIN-CONTAINING COMPND 6 FAMILY C MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PAXILLIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: LIM4 DOMAIN RESIDUES 527-591; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FERMT2, KIND2, MIG2, PLEKHC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGST-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: PXN; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGST-1 KEYWDS LIM DOMAIN, ZINC FINGER, UBIQUITIN FOLD, COMPLEX, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.ZHU,J.QIN REVDAT 3 18-DEC-19 6U4N 1 REMARK REVDAT 2 20-NOV-19 6U4N 1 JRNL REVDAT 1 23-OCT-19 6U4N 0 JRNL AUTH L.ZHU,H.LIU,F.LU,J.YANG,T.V.BYZOVA,J.QIN JRNL TITL STRUCTURAL BASIS OF PAXILLIN RECRUITMENT BY KINDLIN-2 IN JRNL TITL 2 REGULATING CELL ADHESION. JRNL REF STRUCTURE V. 27 1686 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 31590942 JRNL DOI 10.1016/J.STR.2019.09.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000242893. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 50 MM NACL; 50 MM NACL REMARK 210 PRESSURE : AMBIENT PA; AMBIENT PA REMARK 210 SAMPLE CONTENTS : 0.55 MM U-15N, U-13C PAXILLIN REMARK 210 LIM4, 0.89 MM KINDLIN-2 F0, 95% REMARK 210 H2O/5% D2O; 0.54 MM U-15N, U-13C REMARK 210 KINDLIN-2 F0, 0.85 MM PAXILLIN REMARK 210 LIM4, 95% H2O/5% D2O; 0.55 MM U- REMARK 210 15N, U-13C PAXILLIN LIM4, 0.89 REMARK 210 MM KINDLIN-2 F0, 99.8% D2O; 0.54 REMARK 210 MM U-15N, U-13C KINDLIN-2 F0, REMARK 210 0.85 MM PAXILLIN LIM4, 99.8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N/13C-EDITED NOESY; 3D REMARK 210 15N/13C-FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, NMRPIPE, PIPP, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 ALA A -5 REMARK 465 MET A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 GLN A 95 REMARK 465 HIS A 96 REMARK 465 LYS A 97 REMARK 465 LEU A 98 REMARK 465 LEU A 99 REMARK 465 ARG A 100 REMARK 465 LEU A 101 REMARK 465 GLN A 102 REMARK 465 LEU A 103 REMARK 465 PRO A 104 REMARK 465 ASN A 105 REMARK 465 GLY B 534 REMARK 465 ALA B 535 REMARK 465 MET B 536 REMARK 465 ASP B 537 REMARK 465 PRO B 538 REMARK 465 GLU B 539 REMARK 465 PHE B 540 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -49.81 -157.89 REMARK 500 1 LEU A 3 -77.68 -42.77 REMARK 500 1 ASP A 4 -7.04 61.29 REMARK 500 1 ILE A 6 -103.83 -114.45 REMARK 500 1 ARG A 7 -99.26 -156.49 REMARK 500 1 MET A 8 -62.46 -144.66 REMARK 500 1 CYS A 12 -67.85 -164.36 REMARK 500 1 TYR A 13 -46.84 80.66 REMARK 500 1 ALA A 14 -35.96 157.47 REMARK 500 1 ASP A 15 3.45 -166.95 REMARK 500 1 ASP A 53 75.89 64.42 REMARK 500 1 LYS A 55 37.52 -71.01 REMARK 500 1 ASP A 57 92.22 -60.13 REMARK 500 1 ALA A 62 145.19 -170.02 REMARK 500 1 LEU A 72 91.01 -60.34 REMARK 500 1 GLN A 85 -163.47 -171.92 REMARK 500 1 HIS B 542 -162.35 -57.78 REMARK 500 1 ARG B 545 -153.31 -94.09 REMARK 500 1 SER B 547 118.74 -167.34 REMARK 500 1 ALA B 563 -129.39 -123.53 REMARK 500 1 MET B 564 26.34 -65.78 REMARK 500 1 ALA B 565 -8.87 109.01 REMARK 500 1 PRO B 570 -12.44 -45.69 REMARK 500 1 HIS B 572 -4.29 -57.61 REMARK 500 1 PHE B 577 -54.51 -153.29 REMARK 500 1 LEU B 579 15.55 -53.14 REMARK 500 1 ASN B 591 23.80 48.88 REMARK 500 1 ASP B 592 -7.06 82.93 REMARK 500 1 TYR B 595 143.63 -171.27 REMARK 500 2 ALA A 2 -55.72 -151.49 REMARK 500 2 LEU A 3 -84.73 -46.00 REMARK 500 2 ASP A 4 21.86 45.88 REMARK 500 2 ILE A 6 -99.66 -108.72 REMARK 500 2 ARG A 7 -98.43 -153.03 REMARK 500 2 MET A 8 -62.61 -144.78 REMARK 500 2 CYS A 12 -35.19 -164.17 REMARK 500 2 TYR A 13 -96.37 54.15 REMARK 500 2 ALA A 14 -36.97 160.35 REMARK 500 2 ASP A 15 4.85 -161.14 REMARK 500 2 ASP A 26 6.57 56.80 REMARK 500 2 LEU A 27 -37.66 -149.27 REMARK 500 2 ARG A 34 108.52 -57.84 REMARK 500 2 GLU A 38 4.33 -150.77 REMARK 500 2 LEU A 52 -75.05 -80.04 REMARK 500 2 ASP A 53 83.13 71.40 REMARK 500 2 LYS A 55 30.71 -65.46 REMARK 500 2 LEU A 72 86.57 -61.90 REMARK 500 2 LYS A 74 36.33 -87.07 REMARK 500 2 THR A 75 -14.65 -46.01 REMARK 500 2 TRP A 77 -155.26 -104.17 REMARK 500 REMARK 500 THIS ENTRY HAS 645 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 549 SG REMARK 620 2 CYS B 552 SG 114.1 REMARK 620 3 HIS B 569 ND1 89.6 114.5 REMARK 620 4 HIS B 572 ND1 141.7 103.7 79.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 575 SG REMARK 620 2 CYS B 578 SG 109.2 REMARK 620 3 CYS B 596 SG 98.2 116.3 REMARK 620 4 CYS B 599 SG 109.4 112.2 110.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U4M RELATED DB: PDB REMARK 900 6U4M IS THE APO-FORM OF PAXILLIN LIM4 DOMAIN. REMARK 900 RELATED ID: 30659 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF PAXILLIN LIM4 IN COMPLEX WITH KINDLIN-2 F0 DBREF 6U4N A 1 105 UNP Q96AC1 FERM2_HUMAN 1 105 DBREF 6U4N B 541 605 UNP P49023 PAXI_HUMAN 527 591 SEQADV 6U4N GLY A -6 UNP Q96AC1 EXPRESSION TAG SEQADV 6U4N ALA A -5 UNP Q96AC1 EXPRESSION TAG SEQADV 6U4N MET A -4 UNP Q96AC1 EXPRESSION TAG SEQADV 6U4N ASP A -3 UNP Q96AC1 EXPRESSION TAG SEQADV 6U4N PRO A -2 UNP Q96AC1 EXPRESSION TAG SEQADV 6U4N GLU A -1 UNP Q96AC1 EXPRESSION TAG SEQADV 6U4N PHE A 0 UNP Q96AC1 EXPRESSION TAG SEQADV 6U4N GLY B 534 UNP P49023 EXPRESSION TAG SEQADV 6U4N ALA B 535 UNP P49023 EXPRESSION TAG SEQADV 6U4N MET B 536 UNP P49023 EXPRESSION TAG SEQADV 6U4N ASP B 537 UNP P49023 EXPRESSION TAG SEQADV 6U4N PRO B 538 UNP P49023 EXPRESSION TAG SEQADV 6U4N GLU B 539 UNP P49023 EXPRESSION TAG SEQADV 6U4N PHE B 540 UNP P49023 EXPRESSION TAG SEQRES 1 A 112 GLY ALA MET ASP PRO GLU PHE MET ALA LEU ASP GLY ILE SEQRES 2 A 112 ARG MET PRO ASP GLY CYS TYR ALA ASP GLY THR TRP GLU SEQRES 3 A 112 LEU SER VAL HIS VAL THR ASP LEU ASN ARG ASP VAL THR SEQRES 4 A 112 LEU ARG VAL THR GLY GLU VAL HIS ILE GLY GLY VAL MET SEQRES 5 A 112 LEU LYS LEU VAL GLU LYS LEU ASP VAL LYS LYS ASP TRP SEQRES 6 A 112 SER ASP HIS ALA LEU TRP TRP GLU LYS LYS ARG THR TRP SEQRES 7 A 112 LEU LEU LYS THR HIS TRP THR LEU ASP LYS TYR GLY ILE SEQRES 8 A 112 GLN ALA ASP ALA LYS LEU GLN PHE THR PRO GLN HIS LYS SEQRES 9 A 112 LEU LEU ARG LEU GLN LEU PRO ASN SEQRES 1 B 72 GLY ALA MET ASP PRO GLU PHE TYR HIS GLU ARG ARG GLY SEQRES 2 B 72 SER LEU CYS SER GLY CYS GLN LYS PRO ILE THR GLY ARG SEQRES 3 B 72 CYS ILE THR ALA MET ALA LYS LYS PHE HIS PRO GLU HIS SEQRES 4 B 72 PHE VAL CYS ALA PHE CYS LEU LYS GLN LEU ASN LYS GLY SEQRES 5 B 72 THR PHE LYS GLU GLN ASN ASP LYS PRO TYR CYS GLN ASN SEQRES 6 B 72 CYS PHE LEU LYS LEU PHE CYS HET ZN B 701 1 HET ZN B 702 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) HELIX 1 AA1 HIS A 40 ASP A 53 1 14 HELIX 2 AA2 THR A 78 GLY A 83 1 6 HELIX 3 AA3 GLN B 597 PHE B 604 1 8 SHEET 1 AA1 4 ASP A 30 VAL A 35 0 SHEET 2 AA1 4 TRP A 18 HIS A 23 -1 N VAL A 22 O VAL A 31 SHEET 3 AA1 4 LEU A 90 PHE A 92 1 O LEU A 90 N HIS A 23 SHEET 4 AA1 4 LEU A 63 TRP A 64 -1 N TRP A 64 O GLN A 91 SHEET 1 AA2 2 ILE B 561 THR B 562 0 SHEET 2 AA2 2 LYS B 567 PHE B 568 -1 O PHE B 568 N ILE B 561 SHEET 1 AA3 2 PHE B 587 GLN B 590 0 SHEET 2 AA3 2 LYS B 593 CYS B 596 -1 O TYR B 595 N LYS B 588 LINK SG CYS B 549 ZN ZN B 701 1555 1555 2.31 LINK SG CYS B 552 ZN ZN B 701 1555 1555 2.31 LINK ND1 HIS B 569 ZN ZN B 701 1555 1555 2.00 LINK ND1 HIS B 572 ZN ZN B 701 1555 1555 2.01 LINK SG CYS B 575 ZN ZN B 702 1555 1555 2.30 LINK SG CYS B 578 ZN ZN B 702 1555 1555 2.30 LINK SG CYS B 596 ZN ZN B 702 1555 1555 2.30 LINK SG CYS B 599 ZN ZN B 702 1555 1555 2.30 SITE 1 AC1 4 CYS B 549 CYS B 552 HIS B 569 HIS B 572 SITE 1 AC2 4 CYS B 575 CYS B 578 CYS B 596 CYS B 599 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1