HEADER IMMUNE SYSTEM 30-AUG-19 6U6M TITLE CRYSTAL STRUCTURE OF A VACCINE-ELICITED ANTI-HIV-1 RHESUS MACAQUE TITLE 2 ANTIBODY DH840.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH840.1 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH840.1 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 10 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 11 ORGANISM_TAXID: 9544; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FAB FRAGMENT, HIV, ANTIBODY, IMMUNE SYSTEM, RHESUS MACAQUE, VACCINE- KEYWDS 2 ELICITED EXPDTA X-RAY DIFFRACTION AUTHOR W.-H.CHEN,M.CHOE,K.O.SAUNDERS,M.G.JOYCE REVDAT 4 06-NOV-24 6U6M 1 REMARK REVDAT 3 11-OCT-23 6U6M 1 REMARK REVDAT 2 06-OCT-21 6U6M 1 JRNL REVDAT 1 24-MAR-21 6U6M 0 JRNL AUTH F.CAI,W.H.CHEN,W.WU,J.A.JONES,M.CHOE,N.GOHAIN,X.SHEN, JRNL AUTH 2 C.LABRANCHE,A.EATON,L.SUTHERLAND,E.M.LEE,G.E.HERNANDEZ, JRNL AUTH 3 N.R.WU,R.SCEARCE,M.S.SEAMAN,M.A.MOODY,S.SANTRA,K.WIEHE, JRNL AUTH 4 G.D.TOMARAS,K.WAGH,B.KORBER,M.BONSIGNORI,D.C.MONTEFIORI, JRNL AUTH 5 B.F.HAYNES,N.DE VAL,M.G.JOYCE,K.O.SAUNDERS JRNL TITL STRUCTURAL AND GENETIC CONVERGENCE OF HIV-1 NEUTRALIZING JRNL TITL 2 ANTIBODIES IN VACCINATED NON-HUMAN PRIMATES. JRNL REF PLOS PATHOG. V. 17 09624 2021 JRNL REFN ESSN 1553-7374 JRNL PMID 34086838 JRNL DOI 10.1371/JOURNAL.PPAT.1009624 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 12545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5600 - 6.7508 0.87 1217 139 0.1985 0.2705 REMARK 3 2 6.7508 - 5.3625 0.88 1243 143 0.2325 0.2560 REMARK 3 3 5.3625 - 4.6859 0.89 1231 145 0.1939 0.1944 REMARK 3 4 4.6859 - 4.2580 0.89 1267 137 0.1607 0.2165 REMARK 3 5 4.2580 - 3.9531 0.90 1260 132 0.2053 0.2881 REMARK 3 6 3.9531 - 3.7202 0.90 1249 146 0.2119 0.2701 REMARK 3 7 3.7202 - 3.5340 0.90 1279 137 0.2159 0.2958 REMARK 3 8 3.5340 - 3.3803 0.91 1294 145 0.2177 0.2474 REMARK 3 9 3.3803 - 3.2502 0.91 1272 138 0.2282 0.2809 REMARK 3 10 3.2502 - 3.1381 0.91 1299 138 0.2345 0.2602 REMARK 3 11 3.1381 - 3.0400 0.91 1280 144 0.2443 0.3032 REMARK 3 12 3.0400 - 2.9532 0.91 1318 141 0.2608 0.3530 REMARK 3 13 2.9532 - 2.8754 0.93 1295 142 0.2626 0.3063 REMARK 3 14 2.8754 - 2.8053 0.92 1325 145 0.2816 0.3062 REMARK 3 15 2.8053 - 2.7415 0.93 1274 141 0.2749 0.3438 REMARK 3 16 2.7415 - 2.6832 0.81 1146 127 0.3047 0.3390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3317 REMARK 3 ANGLE : 0.503 4529 REMARK 3 CHIRALITY : 0.042 526 REMARK 3 PLANARITY : 0.004 577 REMARK 3 DIHEDRAL : 13.434 1990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.258 73.459 24.233 REMARK 3 T TENSOR REMARK 3 T11: 0.4163 T22: 0.3038 REMARK 3 T33: 0.2794 T12: -0.0507 REMARK 3 T13: -0.0489 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 1.2310 L22: 2.9098 REMARK 3 L33: 1.2265 L12: -0.0227 REMARK 3 L13: -0.0471 L23: 1.5270 REMARK 3 S TENSOR REMARK 3 S11: -0.1614 S12: -0.5084 S13: 0.1413 REMARK 3 S21: 0.8507 S22: 0.0931 S23: 0.0200 REMARK 3 S31: 0.4209 S32: 0.0299 S33: -0.1719 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 18:52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.649 70.116 16.631 REMARK 3 T TENSOR REMARK 3 T11: 0.2227 T22: 0.1960 REMARK 3 T33: 0.2438 T12: -0.0058 REMARK 3 T13: 0.0065 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.5640 L22: 0.6650 REMARK 3 L33: 0.7885 L12: -1.1103 REMARK 3 L13: -0.3567 L23: 0.3755 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: -0.4168 S13: 0.2940 REMARK 3 S21: -0.2717 S22: 0.1949 S23: -0.2501 REMARK 3 S31: 0.1536 S32: 0.2161 S33: 0.1491 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 53:72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.723 74.857 19.753 REMARK 3 T TENSOR REMARK 3 T11: 0.4662 T22: 0.3597 REMARK 3 T33: 0.3670 T12: 0.0153 REMARK 3 T13: -0.0639 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.3041 L22: 0.4053 REMARK 3 L33: 0.2838 L12: -0.3639 REMARK 3 L13: -0.0939 L23: 0.4944 REMARK 3 S TENSOR REMARK 3 S11: 0.1837 S12: -0.1249 S13: -0.0229 REMARK 3 S21: -0.0138 S22: -0.0835 S23: -0.4860 REMARK 3 S31: -0.0446 S32: 0.6070 S33: 0.0181 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 73:87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.531 75.400 24.200 REMARK 3 T TENSOR REMARK 3 T11: 0.3163 T22: 0.2981 REMARK 3 T33: 0.4057 T12: 0.0755 REMARK 3 T13: -0.1734 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.0588 L22: 1.5910 REMARK 3 L33: 0.7852 L12: -0.9184 REMARK 3 L13: -0.1864 L23: -0.1838 REMARK 3 S TENSOR REMARK 3 S11: -0.3025 S12: -0.6978 S13: 0.6399 REMARK 3 S21: 0.3082 S22: 0.1320 S23: -0.9661 REMARK 3 S31: -0.0372 S32: 0.2929 S33: -0.1175 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN H AND RESID 88:100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.015 67.275 10.261 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: -0.2148 REMARK 3 T33: 0.1499 T12: 0.3739 REMARK 3 T13: 0.0510 T23: -0.0931 REMARK 3 L TENSOR REMARK 3 L11: 0.7919 L22: 2.1655 REMARK 3 L33: 1.8796 L12: -0.2559 REMARK 3 L13: -0.9012 L23: 1.1481 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: -0.2510 S13: -1.0095 REMARK 3 S21: 1.6306 S22: -1.3200 S23: 0.1405 REMARK 3 S31: 0.4532 S32: -0.4161 S33: -1.5463 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN H AND RESID 101:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.466 75.190 19.292 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.3366 REMARK 3 T33: 0.1573 T12: 0.0071 REMARK 3 T13: 0.0039 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.0498 L22: 1.0670 REMARK 3 L33: 0.7470 L12: -0.7974 REMARK 3 L13: -0.3554 L23: 0.4444 REMARK 3 S TENSOR REMARK 3 S11: -0.2057 S12: 0.0891 S13: 0.0954 REMARK 3 S21: 0.5807 S22: 0.0297 S23: -0.2534 REMARK 3 S31: 0.7146 S32: -0.2811 S33: -0.0204 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN H AND RESID 120:135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.141 79.492 12.674 REMARK 3 T TENSOR REMARK 3 T11: 0.4114 T22: 0.3463 REMARK 3 T33: 0.2380 T12: -0.0382 REMARK 3 T13: -0.0532 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.0100 L22: 0.3114 REMARK 3 L33: 0.0824 L12: -0.0328 REMARK 3 L13: 0.0056 L23: -0.1287 REMARK 3 S TENSOR REMARK 3 S11: -0.1676 S12: -0.0715 S13: 0.0167 REMARK 3 S21: -0.5699 S22: -0.1199 S23: 0.4395 REMARK 3 S31: -0.1604 S32: -0.1953 S33: 0.0067 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN H AND RESID 136:194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.020 75.746 14.809 REMARK 3 T TENSOR REMARK 3 T11: 0.2278 T22: 0.2225 REMARK 3 T33: 0.2295 T12: -0.0114 REMARK 3 T13: 0.0125 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 1.0695 L22: 0.1592 REMARK 3 L33: 1.4785 L12: -0.4187 REMARK 3 L13: -0.6650 L23: -0.1618 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: -0.1302 S13: -0.0533 REMARK 3 S21: 0.2800 S22: 0.1814 S23: 0.1919 REMARK 3 S31: 0.0577 S32: 0.0298 S33: 0.2581 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN H AND RESID 195:212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.169 73.375 24.084 REMARK 3 T TENSOR REMARK 3 T11: 0.3435 T22: 0.5453 REMARK 3 T33: 0.2750 T12: 0.0467 REMARK 3 T13: -0.0085 T23: 0.0949 REMARK 3 L TENSOR REMARK 3 L11: 0.1207 L22: 0.3696 REMARK 3 L33: 0.5112 L12: -0.0809 REMARK 3 L13: -0.3153 L23: 0.3281 REMARK 3 S TENSOR REMARK 3 S11: 0.2007 S12: -1.1046 S13: -0.4078 REMARK 3 S21: 0.1408 S22: -0.0361 S23: -0.0801 REMARK 3 S31: 0.7533 S32: -0.1612 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.324 72.622 -2.841 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.2677 REMARK 3 T33: 0.2494 T12: 0.0215 REMARK 3 T13: 0.0037 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 1.2595 L22: 2.2435 REMARK 3 L33: 1.8289 L12: -0.9486 REMARK 3 L13: 0.8278 L23: 0.9162 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: 0.4945 S13: -0.0094 REMARK 3 S21: -0.2945 S22: -0.0277 S23: -0.0550 REMARK 3 S31: -0.2550 S32: 0.1507 S33: 0.0056 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN L AND RESID 49:112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.336 69.215 -3.525 REMARK 3 T TENSOR REMARK 3 T11: 0.3121 T22: 0.2495 REMARK 3 T33: 0.2210 T12: -0.0013 REMARK 3 T13: -0.0610 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.7785 L22: 1.5147 REMARK 3 L33: 0.7948 L12: -1.7010 REMARK 3 L13: -0.2828 L23: 0.1234 REMARK 3 S TENSOR REMARK 3 S11: 0.2880 S12: 0.0991 S13: -0.2706 REMARK 3 S21: -0.3101 S22: -0.3409 S23: 0.0743 REMARK 3 S31: 0.2328 S32: 0.0516 S33: -1.1566 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN L AND RESID 113:154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.178 87.674 8.073 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.1856 REMARK 3 T33: 0.1850 T12: -0.0103 REMARK 3 T13: -0.0379 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.9478 L22: 0.7397 REMARK 3 L33: 0.5554 L12: 0.1995 REMARK 3 L13: -0.5079 L23: 0.7509 REMARK 3 S TENSOR REMARK 3 S11: 0.1979 S12: 0.0236 S13: -0.0412 REMARK 3 S21: -0.2421 S22: -0.1077 S23: 0.1466 REMARK 3 S31: -0.2583 S32: -0.1826 S33: 0.0063 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN L AND RESID 155:210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.161 87.447 5.352 REMARK 3 T TENSOR REMARK 3 T11: 0.2417 T22: 0.1302 REMARK 3 T33: 0.1753 T12: -0.0210 REMARK 3 T13: -0.0826 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.8355 L22: 0.6472 REMARK 3 L33: 1.0534 L12: -0.6670 REMARK 3 L13: -0.5742 L23: -0.1207 REMARK 3 S TENSOR REMARK 3 S11: 0.2201 S12: 0.1666 S13: 0.0779 REMARK 3 S21: -0.2807 S22: -0.0382 S23: 0.1251 REMARK 3 S31: -0.1546 S32: 0.0258 S33: 0.6721 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000243288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12547 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.683 REMARK 200 RESOLUTION RANGE LOW (A) : 39.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.17940 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68380 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6C6X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M REMARK 280 PHOSPHATE/CITRATE, 20 % W/V PEG 8000, PH 4.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.05500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.05500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 ILE H 213 REMARK 465 LYS H 214 REMARK 465 THR H 215 REMARK 465 CYS H 216 REMARK 465 GLY L 211 REMARK 465 GLU L 212 REMARK 465 CYS L 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 329 O HOH L 338 1.97 REMARK 500 O HOH H 305 O HOH H 323 1.97 REMARK 500 NZ LYS H 117 O HOH H 301 2.11 REMARK 500 OG1 THR L 163 O HOH L 301 2.14 REMARK 500 O HOH L 308 O HOH L 328 2.14 REMARK 500 O HOH H 333 O HOH H 335 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -0.14 68.66 REMARK 500 ILE H 48 -74.37 -108.86 REMARK 500 LEU H 63 47.03 -153.03 REMARK 500 SER H 98 -154.32 60.04 REMARK 500 ASP H 144 74.90 55.51 REMARK 500 ARG L 30 -106.55 57.80 REMARK 500 ALA L 51 -45.37 69.10 REMARK 500 SER L 77 70.37 54.16 REMARK 500 ASN L 137 79.65 59.19 REMARK 500 LYS L 154 46.82 -142.64 REMARK 500 ASN L 209 -167.96 -100.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 6U6M H 1 216 PDB 6U6M 6U6M 1 216 DBREF 6U6M L 1 213 PDB 6U6M 6U6M 1 213 SEQRES 1 H 226 GLN VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL ARG SEQRES 2 H 226 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 226 THR SER ILE ASN SER ALA TYR ALA TRP GLY TRP VAL ARG SEQRES 4 H 226 LEU PRO PRO GLY LYS GLY LEU GLU TRP ILE MET THR VAL SEQRES 5 H 226 TYR THR SER THR GLY ASN THR TYR SER ASP PRO SER LEU SEQRES 6 H 226 LYS SER ARG VAL THR ILE SER LYS ASP THR SER LYS ASN SEQRES 7 H 226 GLN PHE SER LEU ARG LEU SER SER VAL THR VAL GLU ASP SEQRES 8 H 226 THR ALA VAL TYR PHE CYS ALA ARG ALA ASP GLY SER ASP SEQRES 9 H 226 SER GLY TRP PRO HIS PHE ASP ASN TRP GLY GLN GLY LEU SEQRES 10 H 226 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 226 VAL PHE PRO LEU ALA PRO SER SER ARG SER THR SER GLU SEQRES 12 H 226 SER THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 226 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SER LEU SEQRES 14 H 226 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 226 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 226 SER SER SER LEU GLY THR GLN THR TYR VAL CYS ASN VAL SEQRES 17 H 226 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL SEQRES 18 H 226 GLU ILE LYS THR CYS SEQRES 1 L 213 GLU ILE MET VAL THR GLN SER PRO VAL THR LEU SER VAL SEQRES 2 L 213 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 213 GLN SER VAL ARG ASN ARG ILE ALA TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY GLN SER PRO ARG LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 213 ILE ARG ALA PRO GLY ILE PRO ASP ARG LEU SER GLY SER SEQRES 6 L 213 GLY SER GLY THR GLU PHE THR LEU THR ILE ASN SER LEU SEQRES 7 L 213 GLU PRO SER ASP VAL ALA VAL TYR PHE CYS GLN LEU GLU SEQRES 8 L 213 ALA ASN TRP LEU THR PHE GLY GLY GLY THR LYS VAL GLU SEQRES 9 L 213 ILE LYS ARG ALA VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 213 PRO PRO SER GLU ASP GLN VAL LYS SER GLY THR VAL SER SEQRES 11 L 213 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 213 SER VAL LYS TRP LYS VAL ASP GLY VAL LEU LYS THR GLY SEQRES 13 L 213 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 213 ASN THR TYR SER LEU SER SER THR LEU THR LEU SER ASN SEQRES 15 L 213 THR ASP TYR GLN SER HIS ASN VAL TYR ALA CYS GLU VAL SEQRES 16 L 213 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 213 ASN ARG GLY GLU CYS FORMUL 3 HOH *104(H2 O) HELIX 1 AA1 SER H 28 ALA H 32 5 5 HELIX 2 AA2 PRO H 61 LYS H 64 5 4 HELIX 3 AA3 THR H 83 THR H 87 5 5 HELIX 4 AA4 PRO H 185 LEU H 189 5 5 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 GLU L 79 VAL L 83 5 5 HELIX 7 AA7 SER L 120 LYS L 125 1 6 HELIX 8 AA8 ASN L 182 GLN L 186 1 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 AA1 4 GLN H 77 LEU H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 LEU H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 ASP H 96 -1 N TYR H 90 O LEU H 107 SHEET 4 AA2 6 ALA H 34 LEU H 39 -1 N VAL H 37 O PHE H 91 SHEET 5 AA2 6 GLU H 46 TYR H 52 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 SER H 59 -1 O TYR H 58 N THR H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 LEU H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 ASP H 96 -1 N TYR H 90 O LEU H 107 SHEET 4 AA3 4 HIS H 100D TRP H 103 -1 O HIS H 100D N ASP H 96 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 ALA H 136 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 VAL H 184 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 ALA H 136 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 VAL H 184 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 VAL H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O THR H 205 N HIS H 200 SHEET 1 AA7 4 VAL L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA7 4 LEU L 62 SER L 65 -1 N SER L 65 O THR L 72 SHEET 1 AA8 6 THR L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 101 ILE L 105 1 O GLU L 104 N LEU L 11 SHEET 3 AA8 6 ALA L 84 LEU L 90 -1 N TYR L 86 O THR L 101 SHEET 4 AA8 6 ILE L 33 GLN L 38 -1 N TYR L 36 O PHE L 87 SHEET 5 AA8 6 ARG L 45 TYR L 49 -1 O ARG L 45 N GLN L 37 SHEET 6 AA8 6 ILE L 53 ARG L 54 -1 O ILE L 53 N TYR L 49 SHEET 1 AA9 4 THR L 10 VAL L 13 0 SHEET 2 AA9 4 THR L 101 ILE L 105 1 O GLU L 104 N LEU L 11 SHEET 3 AA9 4 ALA L 84 LEU L 90 -1 N TYR L 86 O THR L 101 SHEET 4 AA9 4 THR L 96 PHE L 97 -1 O THR L 96 N LEU L 90 SHEET 1 AB1 4 SER L 113 PHE L 117 0 SHEET 2 AB1 4 THR L 128 PHE L 138 -1 O LEU L 134 N PHE L 115 SHEET 3 AB1 4 TYR L 172 SER L 181 -1 O LEU L 174 N LEU L 135 SHEET 4 AB1 4 SER L 158 VAL L 162 -1 N GLN L 159 O THR L 177 SHEET 1 AB2 4 VAL L 152 LEU L 153 0 SHEET 2 AB2 4 SER L 144 VAL L 149 -1 N VAL L 149 O VAL L 152 SHEET 3 AB2 4 TYR L 191 THR L 196 -1 O GLU L 194 N LYS L 146 SHEET 4 AB2 4 VAL L 204 PHE L 208 -1 O VAL L 204 N VAL L 195 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 133 CYS L 193 1555 1555 2.03 CISPEP 1 PHE H 146 PRO H 147 0 -2.59 CISPEP 2 GLU H 148 PRO H 149 0 -2.84 CISPEP 3 SER L 7 PRO L 8 0 -2.16 CRYST1 66.110 75.080 93.110 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010740 0.00000