HEADER CELL ADHESION 30-AUG-19 6U6T TITLE NEURONAL GROWTH REGULATOR 1 (NEGR1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL GROWTH REGULATOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IGLON FAMILY MEMBER 4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEGR1, IGLON4, UNQ2433/PRO4993; SOURCE 6 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS SYNAPTIC ORGANIZER, IGLON, IG DOMAIN-CONTAINING, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.MACHIUS,H.VENKANNAGARI,A.MISRA,G.RUDENKO REVDAT 3 11-OCT-23 6U6T 1 REMARK REVDAT 2 03-MAR-21 6U6T 1 JRNL REVDAT 1 12-AUG-20 6U6T 0 JRNL AUTH H.VENKANNAGARI,J.M.KASPER,A.MISRA,S.A.RUSH,S.FAN,H.LEE, JRNL AUTH 2 H.SUN,S.SESHADRINATHAN,M.MACHIUS,J.D.HOMMEL,G.RUDENKO JRNL TITL HIGHLY CONSERVED MOLECULAR FEATURES IN IGLONS CONTRAST THEIR JRNL TITL 2 DISTINCT STRUCTURAL AND BIOLOGICAL OUTCOMES. JRNL REF J.MOL.BIOL. V. 432 5287 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32710982 JRNL DOI 10.1016/J.JMB.2020.07.014 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16-3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.3 REMARK 3 NUMBER OF REFLECTIONS : 14290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.480 REMARK 3 FREE R VALUE TEST SET COUNT : 498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8100 - 4.7656 1.00 4594 166 0.2285 0.2917 REMARK 3 2 4.7656 - 3.7846 0.95 4204 152 0.2151 0.2481 REMARK 3 3 3.7846 - 3.3067 0.69 3066 111 0.2571 0.3144 REMARK 3 4 3.3067 - 3.0100 0.44 1928 69 0.2931 0.3590 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.4637 2.9963 87.3949 REMARK 3 T TENSOR REMARK 3 T11: 0.3785 T22: 0.5100 REMARK 3 T33: 0.4667 T12: -0.0947 REMARK 3 T13: -0.0809 T23: -0.1687 REMARK 3 L TENSOR REMARK 3 L11: 1.8314 L22: 2.5781 REMARK 3 L33: 6.0302 L12: 0.2661 REMARK 3 L13: -2.1231 L23: 0.7218 REMARK 3 S TENSOR REMARK 3 S11: 0.1777 S12: 0.8512 S13: 0.1577 REMARK 3 S21: -0.4262 S22: 0.1452 S23: 0.4600 REMARK 3 S31: -0.3324 S32: -0.4702 S33: 0.6481 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0855 -10.9823 66.5234 REMARK 3 T TENSOR REMARK 3 T11: 0.2996 T22: 0.2949 REMARK 3 T33: 0.3050 T12: -0.1404 REMARK 3 T13: -0.0419 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 2.7379 L22: 0.5115 REMARK 3 L33: 3.5882 L12: -0.7493 REMARK 3 L13: -2.4790 L23: 0.5928 REMARK 3 S TENSOR REMARK 3 S11: -0.1830 S12: 0.1025 S13: -0.0101 REMARK 3 S21: 0.2240 S22: -0.0572 S23: 0.0796 REMARK 3 S31: 0.5377 S32: -0.2794 S33: 0.2530 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7013 -15.5593 20.3931 REMARK 3 T TENSOR REMARK 3 T11: 0.2925 T22: 0.7999 REMARK 3 T33: 0.3919 T12: 0.0386 REMARK 3 T13: 0.1172 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 2.9101 L22: 2.4945 REMARK 3 L33: 0.3791 L12: 0.1208 REMARK 3 L13: -1.0341 L23: 0.1190 REMARK 3 S TENSOR REMARK 3 S11: -0.0917 S12: 0.4667 S13: -0.0762 REMARK 3 S21: -0.4772 S22: 0.0709 S23: -0.4716 REMARK 3 S31: 0.1877 S32: 0.6229 S33: -0.0423 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5584 -50.7798 -15.8214 REMARK 3 T TENSOR REMARK 3 T11: 0.2902 T22: 0.6040 REMARK 3 T33: 0.4792 T12: -0.0099 REMARK 3 T13: 0.0523 T23: 0.2985 REMARK 3 L TENSOR REMARK 3 L11: 2.0634 L22: 2.8814 REMARK 3 L33: 4.7340 L12: -0.2371 REMARK 3 L13: 0.0665 L23: -0.4381 REMARK 3 S TENSOR REMARK 3 S11: -0.1666 S12: -0.3941 S13: -0.4965 REMARK 3 S21: 0.1892 S22: -0.0405 S23: 0.0947 REMARK 3 S31: 0.3649 S32: -0.1044 S33: -0.0304 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5815 -17.7022 11.0782 REMARK 3 T TENSOR REMARK 3 T11: 0.3554 T22: 0.8897 REMARK 3 T33: 0.3123 T12: 0.0796 REMARK 3 T13: -0.0398 T23: 0.1879 REMARK 3 L TENSOR REMARK 3 L11: 1.1784 L22: 3.3718 REMARK 3 L33: 2.3609 L12: -0.4658 REMARK 3 L13: 0.5612 L23: 1.4504 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.3129 S13: -0.0885 REMARK 3 S21: -0.5367 S22: -0.0925 S23: 0.4578 REMARK 3 S31: -0.3434 S32: -0.2769 S33: -0.2616 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7796 2.6774 46.5717 REMARK 3 T TENSOR REMARK 3 T11: 0.3122 T22: 0.2919 REMARK 3 T33: 0.4570 T12: -0.0254 REMARK 3 T13: -0.0678 T23: 0.0676 REMARK 3 L TENSOR REMARK 3 L11: 2.6815 L22: 4.4455 REMARK 3 L33: 6.6521 L12: -0.8662 REMARK 3 L13: -0.3606 L23: 0.0450 REMARK 3 S TENSOR REMARK 3 S11: 0.3254 S12: -0.0363 S13: 0.4501 REMARK 3 S21: 0.0553 S22: -0.2954 S23: -0.1809 REMARK 3 S31: -0.8701 S32: -0.0351 S33: -0.0386 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 47 THROUGH 50 OR REMARK 3 RESID 52 THROUGH 60 OR RESID 62 OR RESID REMARK 3 68 THROUGH 94 OR RESID 100 THROUGH 128 OR REMARK 3 RESID 130 THROUGH 131 OR RESID 133 REMARK 3 THROUGH 164 OR RESID 166 THROUGH 172 OR REMARK 3 RESID 174 THROUGH 176 OR RESID 184 REMARK 3 THROUGH 199 OR RESID 201 THROUGH 206 OR REMARK 3 RESID 212 THROUGH 230 OR RESID 232 REMARK 3 THROUGH 233 OR RESID 241 THROUGH 258 OR REMARK 3 RESID 271 THROUGH 283 OR RESID 294 REMARK 3 THROUGH 312 OR (RESID 313 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME OD1 OR NAME ND2)) OR REMARK 3 RESID 401 THROUGH 501)) REMARK 3 SELECTION : (CHAIN B AND (RESID 47 THROUGH 50 OR REMARK 3 RESID 52 THROUGH 60 OR RESID 62 OR RESID REMARK 3 68 THROUGH 94 OR RESID 100 THROUGH 128 OR REMARK 3 RESID 130 THROUGH 131 OR RESID 133 REMARK 3 THROUGH 164 OR RESID 166 THROUGH 172 OR REMARK 3 RESID 174 THROUGH 176 OR RESID 184 REMARK 3 THROUGH 199 OR RESID 201 THROUGH 206 OR REMARK 3 RESID 212 THROUGH 230 OR RESID 232 REMARK 3 THROUGH 233 OR RESID 241 THROUGH 258 OR REMARK 3 RESID 271 THROUGH 283 OR RESID 294 REMARK 3 THROUGH 501)) REMARK 3 ATOM PAIRS NUMBER : 1220 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000243925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 718 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 718 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16011 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.010 REMARK 200 RESOLUTION RANGE LOW (A) : 31.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 5UV6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 2.5 MG/ML NEGR1 IN 10 MM REMARK 280 HEPES, PH 8.0, 150 MM NACL. RESERVOIR SOLUTION: 20% (W/V) PEG REMARK 280 3350, 0.1 M TRIS PH 9.0, 0.2 M MGCL2, 0.6 M NAI. CRYSTALLIZATION REMARK 280 DROP: 1 MICRO-LITER NEGR1 + 1 MICRO-LITER RESERVOIR SOLUTION REMARK 280 SINGLE CRYSTALS WERE OBTAINED VIA MICROSEEDING, AND THEIR SIZE REMARK 280 IMPROVED TO ~600 X 200 MICRO-METERS BY MACROSEEDING. CRYSTALS REMARK 280 HARVESTED FROM THE CRYSTALLIZATION DROPS WERE CRYO-PROTECTED IN REMARK 280 RESERVOIR SOLUTION CONTAINING 20% (V/V) MPD AND THEN FLASH REMARK 280 COOLED BY PLUNGING INTO LIQUID NITROGEN, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.21200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 126.21200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.78450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.60900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.78450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.60900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 126.21200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.78450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.60900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 126.21200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.78450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.60900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 33 REMARK 465 LEU A 34 REMARK 465 GLY A 35 REMARK 465 THR A 36 REMARK 465 GLY A 37 REMARK 465 VAL A 38 REMARK 465 ASP A 39 REMARK 465 PHE A 40 REMARK 465 PRO A 41 REMARK 465 TRP A 42 REMARK 465 ALA A 43 REMARK 465 ALA A 44 REMARK 465 VAL A 45 REMARK 465 ALA A 314 REMARK 465 SER A 315 REMARK 465 THR A 316 REMARK 465 SER A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 GLU B 33 REMARK 465 LEU B 34 REMARK 465 GLY B 35 REMARK 465 THR B 36 REMARK 465 GLY B 37 REMARK 465 VAL B 38 REMARK 465 ASP B 39 REMARK 465 PHE B 40 REMARK 465 PRO B 41 REMARK 465 TRP B 42 REMARK 465 ALA B 314 REMARK 465 SER B 315 REMARK 465 THR B 316 REMARK 465 SER B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 73 O5 NAG C 1 1.89 REMARK 500 ND2 ASN B 73 O5 NAG E 1 1.94 REMARK 500 O4 NAG E 1 O5 NAG E 2 2.02 REMARK 500 O6 NAG D 1 O5 FUC D 2 2.05 REMARK 500 C6 NAG D 1 C1 FUC D 2 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 84 HE21 GLN B 121 6445 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 -85.87 59.34 REMARK 500 LEU A 96 -74.34 -79.64 REMARK 500 HIS A 124 -149.55 -114.05 REMARK 500 ASN A 207 19.78 -140.27 REMARK 500 SER A 210 -145.91 57.92 REMARK 500 GLU B 63 62.58 -102.52 REMARK 500 ASP B 64 -159.70 71.51 REMARK 500 ARG B 74 -89.25 58.79 REMARK 500 HIS B 124 -150.77 -111.71 REMARK 500 ASN B 207 14.52 -145.55 REMARK 500 SER B 210 -156.76 -143.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 143 OD1 REMARK 620 2 ASP A 143 OD1 0.0 REMARK 620 N 1 DBREF 6U6T A 38 313 UNP Q7Z3B1 NEGR1_HUMAN 38 313 DBREF 6U6T B 38 313 UNP Q7Z3B1 NEGR1_HUMAN 38 313 SEQADV 6U6T GLU A 33 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T LEU A 34 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T GLY A 35 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T THR A 36 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T GLY A 37 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T ALA A 314 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T SER A 315 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T THR A 316 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T SER A 317 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS A 318 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS A 319 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS A 320 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS A 321 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS A 322 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS A 323 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T GLU B 33 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T LEU B 34 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T GLY B 35 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T THR B 36 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T GLY B 37 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T ALA B 314 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T SER B 315 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T THR B 316 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T SER B 317 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS B 318 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS B 319 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS B 320 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS B 321 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS B 322 UNP Q7Z3B1 EXPRESSION TAG SEQADV 6U6T HIS B 323 UNP Q7Z3B1 EXPRESSION TAG SEQRES 1 A 291 GLU LEU GLY THR GLY VAL ASP PHE PRO TRP ALA ALA VAL SEQRES 2 A 291 ASP ASN MET MET VAL ARG LYS GLY ASP THR ALA VAL LEU SEQRES 3 A 291 ARG CYS TYR LEU GLU ASP GLY ALA SER LYS GLY ALA TRP SEQRES 4 A 291 LEU ASN ARG SER SER ILE ILE PHE ALA GLY GLY ASP LYS SEQRES 5 A 291 TRP SER VAL ASP PRO ARG VAL SER ILE SER THR LEU ASN SEQRES 6 A 291 LYS ARG ASP TYR SER LEU GLN ILE GLN ASN VAL ASP VAL SEQRES 7 A 291 THR ASP ASP GLY PRO TYR THR CYS SER VAL GLN THR GLN SEQRES 8 A 291 HIS THR PRO ARG THR MET GLN VAL HIS LEU THR VAL GLN SEQRES 9 A 291 VAL PRO PRO LYS ILE TYR ASP ILE SER ASN ASP MET THR SEQRES 10 A 291 VAL ASN GLU GLY THR ASN VAL THR LEU THR CYS LEU ALA SEQRES 11 A 291 THR GLY LYS PRO GLU PRO SER ILE SER TRP ARG HIS ILE SEQRES 12 A 291 SER PRO SER ALA LYS PRO PHE GLU ASN GLY GLN TYR LEU SEQRES 13 A 291 ASP ILE TYR GLY ILE THR ARG ASP GLN ALA GLY GLU TYR SEQRES 14 A 291 GLU CYS SER ALA GLU ASN ASP VAL SER PHE PRO ASP VAL SEQRES 15 A 291 ARG LYS VAL LYS VAL VAL VAL ASN PHE ALA PRO THR ILE SEQRES 16 A 291 GLN GLU ILE LYS SER GLY THR VAL THR PRO GLY ARG SER SEQRES 17 A 291 GLY LEU ILE ARG CYS GLU GLY ALA GLY VAL PRO PRO PRO SEQRES 18 A 291 ALA PHE GLU TRP TYR LYS GLY GLU LYS LYS LEU PHE ASN SEQRES 19 A 291 GLY GLN GLN GLY ILE ILE ILE GLN ASN PHE SER THR ARG SEQRES 20 A 291 SER ILE LEU THR VAL THR ASN VAL THR GLN GLU HIS PHE SEQRES 21 A 291 GLY ASN TYR THR CYS VAL ALA ALA ASN LYS LEU GLY THR SEQRES 22 A 291 THR ASN ALA SER LEU PRO LEU ASN ALA SER THR SER HIS SEQRES 23 A 291 HIS HIS HIS HIS HIS SEQRES 1 B 291 GLU LEU GLY THR GLY VAL ASP PHE PRO TRP ALA ALA VAL SEQRES 2 B 291 ASP ASN MET MET VAL ARG LYS GLY ASP THR ALA VAL LEU SEQRES 3 B 291 ARG CYS TYR LEU GLU ASP GLY ALA SER LYS GLY ALA TRP SEQRES 4 B 291 LEU ASN ARG SER SER ILE ILE PHE ALA GLY GLY ASP LYS SEQRES 5 B 291 TRP SER VAL ASP PRO ARG VAL SER ILE SER THR LEU ASN SEQRES 6 B 291 LYS ARG ASP TYR SER LEU GLN ILE GLN ASN VAL ASP VAL SEQRES 7 B 291 THR ASP ASP GLY PRO TYR THR CYS SER VAL GLN THR GLN SEQRES 8 B 291 HIS THR PRO ARG THR MET GLN VAL HIS LEU THR VAL GLN SEQRES 9 B 291 VAL PRO PRO LYS ILE TYR ASP ILE SER ASN ASP MET THR SEQRES 10 B 291 VAL ASN GLU GLY THR ASN VAL THR LEU THR CYS LEU ALA SEQRES 11 B 291 THR GLY LYS PRO GLU PRO SER ILE SER TRP ARG HIS ILE SEQRES 12 B 291 SER PRO SER ALA LYS PRO PHE GLU ASN GLY GLN TYR LEU SEQRES 13 B 291 ASP ILE TYR GLY ILE THR ARG ASP GLN ALA GLY GLU TYR SEQRES 14 B 291 GLU CYS SER ALA GLU ASN ASP VAL SER PHE PRO ASP VAL SEQRES 15 B 291 ARG LYS VAL LYS VAL VAL VAL ASN PHE ALA PRO THR ILE SEQRES 16 B 291 GLN GLU ILE LYS SER GLY THR VAL THR PRO GLY ARG SER SEQRES 17 B 291 GLY LEU ILE ARG CYS GLU GLY ALA GLY VAL PRO PRO PRO SEQRES 18 B 291 ALA PHE GLU TRP TYR LYS GLY GLU LYS LYS LEU PHE ASN SEQRES 19 B 291 GLY GLN GLN GLY ILE ILE ILE GLN ASN PHE SER THR ARG SEQRES 20 B 291 SER ILE LEU THR VAL THR ASN VAL THR GLN GLU HIS PHE SEQRES 21 B 291 GLY ASN TYR THR CYS VAL ALA ALA ASN LYS LEU GLY THR SEQRES 22 B 291 THR ASN ALA SER LEU PRO LEU ASN ALA SER THR SER HIS SEQRES 23 B 291 HIS HIS HIS HIS HIS HET NAG C 1 26 HET NAG C 2 26 HET BMA C 3 21 HET NAG D 1 27 HET FUC D 2 20 HET NAG E 1 26 HET NAG E 2 26 HET BMA E 3 21 HET CA A 406 1 HET CA A 407 1 HET NAG B 404 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 4 FUC C6 H12 O5 FORMUL 6 CA 2(CA 2+) HELIX 1 AA1 ASP A 109 ASP A 113 5 5 HELIX 2 AA2 THR A 194 ALA A 198 5 5 HELIX 3 AA3 THR A 288 PHE A 292 5 5 HELIX 4 AA4 ASP B 109 ASP B 113 5 5 HELIX 5 AA5 THR B 194 ALA B 198 5 5 HELIX 6 AA6 THR B 288 PHE B 292 5 5 SHEET 1 AA1 6 ASN A 47 MET A 49 0 SHEET 2 AA1 6 VAL A 131 THR A 134 1 O THR A 134 N MET A 48 SHEET 3 AA1 6 GLY A 114 VAL A 120 -1 N TYR A 116 O VAL A 131 SHEET 4 AA1 6 GLY A 69 ASN A 73 -1 N ALA A 70 O SER A 119 SHEET 5 AA1 6 SER A 76 ALA A 80 -1 O SER A 76 N ASN A 73 SHEET 6 AA1 6 ASP A 83 LYS A 84 -1 O ASP A 83 N ALA A 80 SHEET 1 AA2 4 ASN A 47 MET A 49 0 SHEET 2 AA2 4 VAL A 131 THR A 134 1 O THR A 134 N MET A 48 SHEET 3 AA2 4 GLY A 114 VAL A 120 -1 N TYR A 116 O VAL A 131 SHEET 4 AA2 4 ARG A 127 THR A 128 -1 O ARG A 127 N VAL A 120 SHEET 1 AA3 3 ALA A 56 LEU A 58 0 SHEET 2 AA3 3 SER A 102 ILE A 105 -1 O ILE A 105 N ALA A 56 SHEET 3 AA3 3 VAL A 91 SER A 94 -1 N SER A 92 O GLN A 104 SHEET 1 AA4 3 VAL A 137 ILE A 144 0 SHEET 2 AA4 3 VAL A 156 LYS A 165 -1 O LEU A 161 N ASP A 143 SHEET 3 AA4 3 TYR A 187 ILE A 190 -1 O ILE A 190 N VAL A 156 SHEET 1 AA5 4 MET A 148 ASN A 151 0 SHEET 2 AA5 4 ASP A 213 SER A 232 1 O ASN A 222 N VAL A 150 SHEET 3 AA5 4 GLY A 199 GLU A 206 -1 N CYS A 203 O ARG A 215 SHEET 4 AA5 4 SER A 169 ILE A 175 -1 N ARG A 173 O GLU A 202 SHEET 1 AA6 5 MET A 148 ASN A 151 0 SHEET 2 AA6 5 ASP A 213 SER A 232 1 O ASN A 222 N VAL A 150 SHEET 3 AA6 5 GLY A 241 VAL A 250 -1 O ALA A 248 N THR A 226 SHEET 4 AA6 5 ARG A 279 VAL A 284 -1 O LEU A 282 N ILE A 243 SHEET 5 AA6 5 ILE A 271 ASN A 275 -1 N ILE A 272 O THR A 283 SHEET 1 AA7 4 LYS A 262 LYS A 263 0 SHEET 2 AA7 4 ALA A 254 LYS A 259 -1 N LYS A 259 O LYS A 262 SHEET 3 AA7 4 GLY A 293 ALA A 300 -1 O ALA A 300 N ALA A 254 SHEET 4 AA7 4 THR A 305 LEU A 312 -1 O ALA A 308 N CYS A 297 SHEET 1 AA8 6 ALA B 44 ARG B 51 0 SHEET 2 AA8 6 ARG B 127 ILE B 144 1 O THR B 128 N ALA B 44 SHEET 3 AA8 6 GLY B 114 VAL B 120 -1 N TYR B 116 O VAL B 131 SHEET 4 AA8 6 GLY B 69 ASN B 73 -1 N ALA B 70 O SER B 119 SHEET 5 AA8 6 SER B 76 ALA B 80 -1 O SER B 76 N ASN B 73 SHEET 6 AA8 6 ASP B 83 LYS B 84 -1 O ASP B 83 N ALA B 80 SHEET 1 AA9 4 ALA B 44 ARG B 51 0 SHEET 2 AA9 4 ARG B 127 ILE B 144 1 O THR B 128 N ALA B 44 SHEET 3 AA9 4 VAL B 156 LYS B 165 -1 O LEU B 161 N ASP B 143 SHEET 4 AA9 4 TYR B 187 ILE B 190 -1 O ILE B 190 N VAL B 156 SHEET 1 AB1 3 ALA B 56 LEU B 58 0 SHEET 2 AB1 3 SER B 102 ILE B 105 -1 O LEU B 103 N LEU B 58 SHEET 3 AB1 3 VAL B 91 SER B 94 -1 N SER B 92 O GLN B 104 SHEET 1 AB2 4 MET B 148 ASN B 151 0 SHEET 2 AB2 4 ASP B 213 SER B 232 1 O ASN B 222 N VAL B 150 SHEET 3 AB2 4 GLY B 199 GLU B 206 -1 N CYS B 203 O ARG B 215 SHEET 4 AB2 4 SER B 169 HIS B 174 -1 N SER B 171 O SER B 204 SHEET 1 AB3 5 MET B 148 ASN B 151 0 SHEET 2 AB3 5 ASP B 213 SER B 232 1 O ASN B 222 N VAL B 150 SHEET 3 AB3 5 GLY B 241 VAL B 250 -1 O ARG B 244 N LYS B 231 SHEET 4 AB3 5 ARG B 279 VAL B 284 -1 O VAL B 284 N GLY B 241 SHEET 5 AB3 5 ILE B 271 ASN B 275 -1 N ILE B 272 O THR B 283 SHEET 1 AB4 4 LYS B 262 LYS B 263 0 SHEET 2 AB4 4 ALA B 254 LYS B 259 -1 N LYS B 259 O LYS B 262 SHEET 3 AB4 4 ASN B 294 ALA B 300 -1 O ALA B 300 N ALA B 254 SHEET 4 AB4 4 ASN B 307 PRO B 311 -1 O LEU B 310 N TYR B 295 SSBOND 1 CYS A 60 CYS A 118 1555 1555 2.03 SSBOND 2 CYS A 160 CYS A 203 1555 1555 2.03 SSBOND 3 CYS A 245 CYS A 297 1555 1555 2.04 SSBOND 4 CYS B 60 CYS B 118 1555 1555 2.03 SSBOND 5 CYS B 160 CYS B 203 1555 1555 2.03 SSBOND 6 CYS B 245 CYS B 297 1555 1555 2.03 LINK ND2 ASN A 73 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 155 C1 NAG D 1 1555 1555 1.47 LINK ND2 ASN B 73 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN B 155 C1 NAG B 404 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O6 NAG D 1 C1 FUC D 2 1555 1555 1.40 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.40 LINK OD1 ASP A 143 CA CA A 407 1555 1555 2.55 LINK OD1 ASP A 143 CA CA A 407 1555 3555 2.55 LINK OD2 ASP A 189 CA CA A 406 1555 1555 2.32 CISPEP 1 LYS A 165 PRO A 166 0 0.00 CISPEP 2 VAL A 250 PRO A 251 0 0.57 CISPEP 3 LYS B 165 PRO B 166 0 -2.18 CISPEP 4 VAL B 250 PRO B 251 0 -0.04 CRYST1 73.569 97.218 252.424 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003962 0.00000