HEADER IMMUNE SYSTEM 04-SEP-19 6U85 TITLE SITE-SPECIFIC LYSINE ARYLATION AS AN ALTERNATIVE BIOCONJUGATION TITLE 2 STRATEGY FOR CHEMICALLY PROGRAMMED ANTIBODIES AND ANTIBODY-DRUG TITLE 3 CONJUGATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS SINGLE CHAIN FV, SCFV, ANTIBODY, ROR2, KRINGLE DOMAIN, RECEPTOR KEYWDS 2 TYROSINE KINASE-LIKE ORPHAN RECEPTOR, PHAGE DISPLAY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.PARK,C.RADER REVDAT 3 11-OCT-23 6U85 1 REMARK REVDAT 2 04-DEC-19 6U85 1 JRNL REVDAT 1 13-NOV-19 6U85 0 JRNL AUTH D.HWANG,K.TSUJI,H.PARK,T.R.BURKE JR.,C.RADER JRNL TITL SITE-SPECIFIC LYSINE ARYLATION AS AN ALTERNATIVE JRNL TITL 2 BIOCONJUGATION STRATEGY FOR CHEMICALLY PROGRAMMED ANTIBODIES JRNL TITL 3 AND ANTIBODY-DRUG CONJUGATES. JRNL REF BIOCONJUG.CHEM. V. 30 2889 2019 JRNL REFN ISSN 1043-1802 JRNL PMID 31675216 JRNL DOI 10.1021/ACS.BIOCONJCHEM.9B00609 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 3 NUMBER OF REFLECTIONS : 11321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7600 - 4.4100 1.00 3210 140 0.1767 0.1961 REMARK 3 2 4.4100 - 3.5000 0.91 2891 140 0.1976 0.2394 REMARK 3 3 3.5000 - 3.0600 0.93 2921 150 0.2705 0.3759 REMARK 3 4 3.0600 - 2.7800 0.56 1778 91 0.3318 0.4054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.421 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3417 REMARK 3 ANGLE : 0.531 4643 REMARK 3 CHIRALITY : 0.042 517 REMARK 3 PLANARITY : 0.006 592 REMARK 3 DIHEDRAL : 14.993 2032 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8224 -13.1616 -3.9891 REMARK 3 T TENSOR REMARK 3 T11: 0.3017 T22: 0.2595 REMARK 3 T33: 0.2790 T12: 0.1126 REMARK 3 T13: 0.1297 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.3955 L22: 3.9247 REMARK 3 L33: 3.3971 L12: -1.9045 REMARK 3 L13: 1.5102 L23: -0.4955 REMARK 3 S TENSOR REMARK 3 S11: -0.3958 S12: -0.1679 S13: -0.1339 REMARK 3 S21: 0.1354 S22: 0.2481 S23: 0.1672 REMARK 3 S31: -0.3506 S32: -0.1879 S33: 0.0455 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 76 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6639 -14.8850 -3.0722 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.2870 REMARK 3 T33: 0.1778 T12: 0.1926 REMARK 3 T13: 0.1339 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.4044 L22: 2.9443 REMARK 3 L33: 2.6164 L12: -1.6867 REMARK 3 L13: -0.6012 L23: 0.5464 REMARK 3 S TENSOR REMARK 3 S11: 0.1131 S12: 0.0945 S13: 0.0482 REMARK 3 S21: 0.0568 S22: 0.0664 S23: 0.2517 REMARK 3 S31: -0.3552 S32: -0.2518 S33: -0.0580 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 106 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9666 -37.7564 2.2350 REMARK 3 T TENSOR REMARK 3 T11: 0.3128 T22: 0.3502 REMARK 3 T33: 0.3837 T12: 0.0724 REMARK 3 T13: 0.0475 T23: 0.1176 REMARK 3 L TENSOR REMARK 3 L11: 1.2871 L22: 6.0556 REMARK 3 L33: 2.9285 L12: 0.5437 REMARK 3 L13: -0.3753 L23: -3.2104 REMARK 3 S TENSOR REMARK 3 S11: -0.2733 S12: -0.2983 S13: -0.3339 REMARK 3 S21: 0.1811 S22: 0.1785 S23: -0.2961 REMARK 3 S31: 0.3290 S32: -0.1888 S33: 0.0544 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 141 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1480 -46.6153 6.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.3817 T22: 0.2711 REMARK 3 T33: 0.2045 T12: -0.0633 REMARK 3 T13: 0.0154 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 4.3408 L22: 4.3965 REMARK 3 L33: 6.2406 L12: -0.0815 REMARK 3 L13: -2.8704 L23: -3.3498 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.1260 S13: -0.2688 REMARK 3 S21: -0.2366 S22: 0.0666 S23: 0.2460 REMARK 3 S31: 0.6741 S32: -0.3060 S33: -0.0868 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2782 -14.8272 19.3606 REMARK 3 T TENSOR REMARK 3 T11: 0.4491 T22: 0.4297 REMARK 3 T33: 0.5671 T12: 0.0296 REMARK 3 T13: -0.0813 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 8.1365 L22: 3.1488 REMARK 3 L33: 4.9783 L12: 1.1731 REMARK 3 L13: -2.7810 L23: -2.4492 REMARK 3 S TENSOR REMARK 3 S11: -0.0728 S12: -0.1046 S13: 0.4412 REMARK 3 S21: 0.3431 S22: -0.5215 S23: -1.2148 REMARK 3 S31: -0.5676 S32: 0.2413 S33: 0.4757 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 25 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8531 -11.1038 17.5315 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.1872 REMARK 3 T33: 0.1743 T12: 0.0353 REMARK 3 T13: 0.0077 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 4.0595 L22: 4.6422 REMARK 3 L33: 5.9167 L12: -1.8506 REMARK 3 L13: 0.8290 L23: 0.1702 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: 0.2459 S13: 0.2236 REMARK 3 S21: -0.2556 S22: -0.2101 S23: -0.3508 REMARK 3 S31: 0.2190 S32: 0.1184 S33: 0.2212 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 95 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8784 -44.0552 12.9702 REMARK 3 T TENSOR REMARK 3 T11: 0.2989 T22: 0.5400 REMARK 3 T33: 0.4439 T12: 0.1792 REMARK 3 T13: 0.0912 T23: 0.1841 REMARK 3 L TENSOR REMARK 3 L11: 0.6405 L22: 2.1758 REMARK 3 L33: 1.8047 L12: -0.3892 REMARK 3 L13: 0.3507 L23: -1.0653 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: -0.1197 S13: -0.1086 REMARK 3 S21: -0.5859 S22: -0.3618 S23: -0.7225 REMARK 3 S31: 0.5984 S32: 0.6063 S33: 0.0495 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 44.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.19340 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DZR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE DIBASIC, 20% REMARK 280 W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.87467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.93733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.90600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.96867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.84333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 135 REMARK 465 SER H 136 REMARK 465 THR H 137 REMARK 465 SER H 231 REMARK 465 CYS H 232 REMARK 465 CYS L 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 195 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 89 -151.67 -120.83 REMARK 500 TYR H 103 -60.69 74.40 REMARK 500 SER H 132 -156.64 -82.57 REMARK 500 ASP H 150 78.85 63.96 REMARK 500 LEU L 52 -64.82 -109.79 REMARK 500 VAL L 56 -59.57 73.40 REMARK 500 ALA L 89 -168.09 -173.68 REMARK 500 ASN L 143 87.83 61.91 REMARK 500 LYS L 195 -26.93 -141.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR L 145 PRO L 146 138.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 301 DBREF 6U85 H 1 232 PDB 6U85 6U85 1 232 DBREF 6U85 L 1 219 PDB 6U85 6U85 1 219 SEQRES 1 H 221 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 221 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 221 PHE THR PHE SER ASN TYR TRP MET SER TRP VAL ARG GLN SEQRES 4 H 221 SER PRO GLU LYS GLY LEU GLU TRP VAL SER GLU ILE ARG SEQRES 5 H 221 LEU ARG SER ASP ASN TYR ALA THR HIS TYR ALA GLU SER SEQRES 6 H 221 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS SEQRES 7 H 221 ASN THR LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 H 221 ASP THR GLY ILE TYR TYR CYS ARG THR TYR PHE TYR SER SEQRES 9 H 221 PHE SER TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 221 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 221 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 221 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 221 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 221 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 221 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 221 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 221 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 1 L 219 GLU LEU GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 219 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU LEU HIS THR TYR GLY SER PRO TYR LEU ASN SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO SER SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 THR ILE SER SER LEU GLN PRO GLU ASP PHE ALA VAL TYR SEQRES 8 L 219 PHE CYS SER GLN GLY THR HIS LEU PRO TYR THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET GOL H 301 13 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *24(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 LEU H 53 ASN H 57 5 5 HELIX 3 AA3 GLU H 64 LYS H 67 5 4 HELIX 4 AA4 SER H 198 LEU H 201 5 3 HELIX 5 AA5 LYS H 215 ASN H 218 5 4 HELIX 6 AA6 SER L 26 LEU L 30 5 5 HELIX 7 AA7 GLN L 84 PHE L 88 5 5 HELIX 8 AA8 SER L 126 LYS L 131 1 6 HELIX 9 AA9 SER L 187 LYS L 193 1 7 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 THR H 80 MET H 85 -1 O MET H 85 N LEU H 18 SHEET 4 AA1 4 PHE H 70 ASP H 75 -1 N SER H 73 O TYR H 82 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA2 6 GLY H 94 TYR H 101 -1 N TYR H 96 O THR H 112 SHEET 4 AA2 6 TRP H 33 SER H 40 -1 N VAL H 37 O TYR H 97 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA2 6 THR H 60 TYR H 62 -1 O HIS H 61 N GLU H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA3 4 GLY H 94 TYR H 101 -1 N TYR H 96 O THR H 112 SHEET 4 AA3 4 SER H 106 TRP H 108 -1 O TYR H 107 N THR H 100 SHEET 1 AA4 4 SER H 125 LEU H 129 0 SHEET 2 AA4 4 THR H 141 TYR H 151 -1 O LEU H 147 N PHE H 127 SHEET 3 AA4 4 TYR H 187 PRO H 196 -1 O LEU H 189 N VAL H 148 SHEET 4 AA4 4 VAL H 173 THR H 175 -1 N HIS H 174 O VAL H 192 SHEET 1 AA5 4 SER H 125 LEU H 129 0 SHEET 2 AA5 4 THR H 141 TYR H 151 -1 O LEU H 147 N PHE H 127 SHEET 3 AA5 4 TYR H 187 PRO H 196 -1 O LEU H 189 N VAL H 148 SHEET 4 AA5 4 VAL H 179 LEU H 180 -1 N VAL H 179 O SER H 188 SHEET 1 AA6 3 THR H 157 TRP H 161 0 SHEET 2 AA6 3 TYR H 207 HIS H 214 -1 O ASN H 213 N THR H 157 SHEET 3 AA6 3 THR H 219 VAL H 225 -1 O VAL H 225 N TYR H 207 SHEET 1 AA7 4 THR L 5 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ARG L 24 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 ASP L 75 ILE L 80 -1 O ILE L 80 N VAL L 19 SHEET 4 AA7 4 PHE L 67 SER L 72 -1 N SER L 68 O THR L 79 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 107 LYS L 112 1 O GLU L 110 N LEU L 11 SHEET 3 AA8 6 VAL L 90 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 AA8 6 ASN L 39 GLN L 43 -1 N ASN L 39 O SER L 94 SHEET 5 AA8 6 LYS L 50 TYR L 54 -1 O ILE L 53 N TRP L 40 SHEET 6 AA8 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 107 LYS L 112 1 O GLU L 110 N LEU L 11 SHEET 3 AA9 4 VAL L 90 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 AA9 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AB1 4 SER L 119 PHE L 123 0 SHEET 2 AB1 4 ALA L 135 PHE L 144 -1 O LEU L 140 N PHE L 121 SHEET 3 AB1 4 TYR L 178 LEU L 186 -1 O LEU L 184 N VAL L 137 SHEET 4 AB1 4 SER L 164 VAL L 168 -1 N GLN L 165 O THR L 183 SHEET 1 AB2 3 LYS L 150 LYS L 154 0 SHEET 2 AB2 3 VAL L 196 THR L 202 -1 O GLU L 200 N GLN L 152 SHEET 3 AB2 3 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SSBOND 1 CYS H 22 CYS H 98 1555 1555 2.03 SSBOND 2 CYS H 146 CYS H 210 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.03 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.04 CISPEP 1 PHE H 152 PRO H 153 0 -2.06 CISPEP 2 GLU H 154 PRO H 155 0 -3.74 CISPEP 3 SER L 7 PRO L 8 0 -4.92 CISPEP 4 LEU L 99 PRO L 100 0 -6.62 SITE 1 AC1 5 SER H 30 ARG H 54 SER H 55 ARG L 113 SITE 2 AC1 5 THR L 114 CRYST1 92.762 92.762 107.812 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010780 0.006224 0.000000 0.00000 SCALE2 0.000000 0.012448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009275 0.00000