HEADER TRANSCRIPTION/INHIBITOR 05-SEP-19 6U8H TITLE BRD2-BD1 IN COMPLEX WITH THE CYCLIC PEPTIDE 3.2_2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CYCLIC PEPTIDE 3.2_2; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS BET, BROMODOMAIN, MACROCYCLIC PEPTIDE, BRD2, INHIBITOR, RAPID, KEYWDS 2 TRANSCRIPTION-INHIBITOR COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.PATEL,J.L.WALSHE,L.J.WALPORT,J.P.MACKAY REVDAT 4 15-NOV-23 6U8H 1 REMARK REVDAT 3 11-OCT-23 6U8H 1 REMARK REVDAT 2 03-MAR-21 6U8H 1 JRNL REVDAT 1 19-AUG-20 6U8H 0 JRNL AUTH K.PATEL,L.J.WALPORT,J.L.WALSHE,P.D.SOLOMON,J.K.K.LOW, JRNL AUTH 2 D.H.TRAN,K.S.MOURADIAN,A.P.G.SILVA,L.WILKINSON-WHITE, JRNL AUTH 3 A.NORMAN,C.FRANCK,J.M.MATTHEWS,J.M.GUSS,R.J.PAYNE, JRNL AUTH 4 T.PASSIOURA,H.SUGA,J.P.MACKAY JRNL TITL CYCLIC PEPTIDES CAN ENGAGE A SINGLE BINDING POCKET THROUGH JRNL TITL 2 HIGHLY DIVERGENT MODES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 26728 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33046654 JRNL DOI 10.1073/PNAS.2003086117 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4400 - 3.7700 1.00 3041 155 0.1674 0.2066 REMARK 3 2 3.7700 - 2.9900 1.00 2900 147 0.1861 0.2303 REMARK 3 3 2.9900 - 2.6100 1.00 2892 133 0.1928 0.2151 REMARK 3 4 2.6100 - 2.3700 1.00 2839 151 0.1994 0.2543 REMARK 3 5 2.3700 - 2.2000 1.00 2815 149 0.1897 0.2324 REMARK 3 6 2.2000 - 2.0700 0.98 2763 163 0.1857 0.2348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.169 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.502 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1258 REMARK 3 ANGLE : 0.465 1680 REMARK 3 CHIRALITY : 0.038 172 REMARK 3 PLANARITY : 0.004 204 REMARK 3 DIHEDRAL : 11.819 756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8781 21.0568 -6.9982 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.2431 REMARK 3 T33: 0.1851 T12: -0.0061 REMARK 3 T13: 0.0077 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 7.6716 L22: 3.6046 REMARK 3 L33: 1.4835 L12: -2.1381 REMARK 3 L13: 2.5228 L23: -1.0270 REMARK 3 S TENSOR REMARK 3 S11: -0.3258 S12: -0.2709 S13: 0.1431 REMARK 3 S21: 0.0694 S22: 0.1918 S23: -0.2276 REMARK 3 S31: -0.1734 S32: -0.0168 S33: 0.1397 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7765 12.5440 -1.7140 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.2662 REMARK 3 T33: 0.2510 T12: -0.0305 REMARK 3 T13: -0.0165 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 8.3640 L22: 2.0170 REMARK 3 L33: 9.9476 L12: 0.8081 REMARK 3 L13: -3.1746 L23: -0.4647 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: -0.3756 S13: -0.1964 REMARK 3 S21: 0.2889 S22: 0.2617 S23: 0.0520 REMARK 3 S31: 0.5950 S32: -0.3536 S33: -0.2778 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9338 16.3894 -16.7134 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.4073 REMARK 3 T33: 0.2719 T12: -0.0188 REMARK 3 T13: -0.0160 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 5.0213 L22: 3.0956 REMARK 3 L33: 6.9867 L12: 0.4240 REMARK 3 L13: -1.0632 L23: -1.8899 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: 1.2367 S13: 0.0856 REMARK 3 S21: -0.3084 S22: 0.0415 S23: -0.3766 REMARK 3 S31: 0.1070 S32: -0.4316 S33: -0.0592 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6602 13.0665 -20.8042 REMARK 3 T TENSOR REMARK 3 T11: 0.2687 T22: 0.4542 REMARK 3 T33: 0.2445 T12: -0.0579 REMARK 3 T13: -0.0245 T23: 0.0695 REMARK 3 L TENSOR REMARK 3 L11: 7.0434 L22: 9.2486 REMARK 3 L33: 5.0237 L12: -4.4484 REMARK 3 L13: -4.2703 L23: 6.5013 REMARK 3 S TENSOR REMARK 3 S11: 0.2530 S12: 0.8787 S13: 0.0466 REMARK 3 S21: -0.5379 S22: 0.2706 S23: -0.2459 REMARK 3 S31: -0.3445 S32: -0.6427 S33: -0.4466 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3364 21.9657 -8.6084 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.3686 REMARK 3 T33: 0.2864 T12: -0.0459 REMARK 3 T13: 0.0124 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 5.9050 L22: 5.5969 REMARK 3 L33: 3.3012 L12: -5.0043 REMARK 3 L13: 1.0268 L23: 1.1557 REMARK 3 S TENSOR REMARK 3 S11: -0.1323 S12: -0.6788 S13: 0.9500 REMARK 3 S21: 0.3658 S22: 0.0206 S23: -0.5917 REMARK 3 S31: -0.1290 S32: 0.4845 S33: 0.0941 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6377 13.4029 -12.6961 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.2890 REMARK 3 T33: 0.1705 T12: -0.0119 REMARK 3 T13: -0.0225 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 9.0896 L22: 5.6392 REMARK 3 L33: 0.0667 L12: -5.6869 REMARK 3 L13: -0.6803 L23: 0.6081 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.3057 S13: -0.1694 REMARK 3 S21: 0.0761 S22: 0.0048 S23: 0.1838 REMARK 3 S31: -0.0046 S32: -0.0179 S33: 0.0234 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6189 0.1127 -13.2491 REMARK 3 T TENSOR REMARK 3 T11: 0.3933 T22: 0.3583 REMARK 3 T33: 0.5425 T12: 0.0331 REMARK 3 T13: -0.0899 T23: -0.1218 REMARK 3 L TENSOR REMARK 3 L11: 2.4937 L22: 8.2506 REMARK 3 L33: 2.4847 L12: 4.0875 REMARK 3 L13: 0.3206 L23: -1.3916 REMARK 3 S TENSOR REMARK 3 S11: 0.3458 S12: 1.0915 S13: -1.9231 REMARK 3 S21: -0.0265 S22: 0.0157 S23: -1.0317 REMARK 3 S31: 0.3058 S32: 0.0440 S33: -0.4053 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8349 5.4859 -3.1761 REMARK 3 T TENSOR REMARK 3 T11: 0.2835 T22: 0.2142 REMARK 3 T33: 0.2533 T12: -0.0143 REMARK 3 T13: 0.0029 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 7.0461 L22: 3.4265 REMARK 3 L33: 8.1664 L12: -3.7899 REMARK 3 L13: -6.9282 L23: 3.4896 REMARK 3 S TENSOR REMARK 3 S11: -0.2627 S12: 0.0991 S13: -0.9995 REMARK 3 S21: 0.3545 S22: 0.1278 S23: 0.1208 REMARK 3 S31: 0.3310 S32: -0.2387 S33: 0.1165 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0230 19.1677 -2.6231 REMARK 3 T TENSOR REMARK 3 T11: 0.1735 T22: 0.4745 REMARK 3 T33: 0.4108 T12: -0.0020 REMARK 3 T13: 0.0360 T23: 0.1204 REMARK 3 L TENSOR REMARK 3 L11: 4.0181 L22: 6.5508 REMARK 3 L33: 8.8429 L12: -5.1237 REMARK 3 L13: -0.5519 L23: 0.4267 REMARK 3 S TENSOR REMARK 3 S11: -0.1429 S12: -0.3317 S13: -0.7012 REMARK 3 S21: -0.5303 S22: 0.3265 S23: 0.3128 REMARK 3 S31: 0.2648 S32: -0.2459 S33: -0.1907 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5470 13.3784 -8.9461 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.2429 REMARK 3 T33: 0.1893 T12: 0.0075 REMARK 3 T13: 0.0069 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 6.2104 L22: 8.1726 REMARK 3 L33: 4.6593 L12: 3.8484 REMARK 3 L13: 2.7636 L23: 1.3641 REMARK 3 S TENSOR REMARK 3 S11: 0.1084 S12: 0.6819 S13: -0.2818 REMARK 3 S21: 0.1009 S22: 0.1555 S23: -0.6898 REMARK 3 S31: 0.3468 S32: 0.4077 S33: -0.3243 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000243903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 47.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ONI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM IODIDE 0.1 M BIS-TRIS REMARK 280 PROPANE 7.5 20 % W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 100K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.79600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.79350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.79350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.89800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.79350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.79350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.69400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.79350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.79350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.89800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.79350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.79350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.69400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.79600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 379 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 59 REMARK 465 GLY A 60 REMARK 465 PRO A 61 REMARK 465 LEU A 62 REMARK 465 ILE A 191 REMARK 465 PRO A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH2 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE3 C 105 DBREF 6U8H A 65 194 UNP H0Y6K2 H0Y6K2_HUMAN 71 200 DBREF 6U8H C 0 12 PDB 6U8H 6U8H 0 12 SEQADV 6U8H GLN A 59 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U8H GLY A 60 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U8H PRO A 61 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U8H LEU A 62 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U8H GLY A 63 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U8H SER A 64 UNP H0Y6K2 EXPRESSION TAG SEQRES 1 A 136 GLN GLY PRO LEU GLY SER GLU VAL SER ASN PRO LYS LYS SEQRES 2 A 136 PRO GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS SEQRES 3 A 136 VAL VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP SEQRES 4 A 136 PRO PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU SEQRES 5 A 136 PRO ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET SEQRES 6 A 136 GLY THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP SEQRES 7 A 136 ALA ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE SEQRES 8 A 136 THR ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE SEQRES 9 A 136 VAL LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN SEQRES 10 A 136 LYS VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL SEQRES 11 A 136 VAL THR ILE PRO LYS ASN SEQRES 1 C 13 ACE TRP SER TRP LEU CYS LYS ALY TYR ASN LEU ILE HIS HET ACE C 0 3 HET ALY C 7 12 HET IOD A 201 1 HET IOD A 202 1 HET IOD A 203 1 HET GOL A 204 6 HET GOL A 205 6 HET NH2 C 101 1 HET IOD C 102 1 HET IOD C 103 1 HET IOD C 104 1 HET PE3 C 105 43 HETNAM ACE ACETYL GROUP HETNAM ALY N(6)-ACETYLLYSINE HETNAM IOD IODIDE ION HETNAM GOL GLYCEROL HETNAM NH2 AMINO GROUP HETNAM PE3 3,6,9,12,15,18,21,24,27,30,33,36,39- HETNAM 2 PE3 TRIDECAOXAHENTETRACONTANE-1,41-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PE3 POLYETHYLENE GLYCOL FORMUL 2 ACE C2 H4 O FORMUL 2 ALY C8 H16 N2 O3 FORMUL 3 IOD 6(I 1-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 NH2 H2 N FORMUL 12 PE3 C28 H58 O15 FORMUL 13 HOH *129(H2 O) HELIX 1 AA1 ASN A 77 VAL A 85 1 9 HELIX 2 AA2 VAL A 85 LYS A 92 1 8 HELIX 3 AA3 HIS A 93 ARG A 100 5 8 HELIX 4 AA4 ASP A 104 GLY A 109 1 6 HELIX 5 AA5 ASP A 112 ILE A 117 1 6 HELIX 6 AA6 ASP A 122 ASN A 132 1 11 HELIX 7 AA7 ALA A 137 ASN A 156 1 20 HELIX 8 AA8 ASP A 160 ALA A 178 1 19 HELIX 9 AA9 SER C 2 HIS C 12 1 11 SHEET 1 AA1 2 VAL A 75 THR A 76 0 SHEET 2 AA1 2 GLU A 186 LEU A 187 -1 O LEU A 187 N VAL A 75 LINK C ACE C 0 N TRP C 1 1555 1555 1.33 LINK CH3 ACE C 0 SG CYS C 5 1555 1555 1.77 LINK C LYS C 6 N ALY C 7 1555 1555 1.33 LINK C ALY C 7 N TYR C 8 1555 1555 1.33 LINK C HIS C 12 N NH2 C 101 1555 1555 1.43 SITE 1 AC1 1 TRP A 97 SITE 1 AC2 7 HIS A 93 GLN A 94 TRP A 97 ARG A 100 SITE 2 AC2 7 HOH A 328 LYS C 6 PE3 C 105 SITE 1 AC3 5 GLN A 101 PRO A 102 ASP A 104 LYS A 107 SITE 2 AC3 5 HOH A 375 SITE 1 AC4 4 ASN C 9 LEU C 10 ILE C 11 HIS C 12 SITE 1 AC5 1 GLN A 101 SITE 1 AC6 3 TRP C 3 IOD C 104 PE3 C 105 SITE 1 AC7 1 IOD C 103 SITE 1 AC8 7 TRP A 97 GLN A 101 GOL A 204 TRP C 1 SITE 2 AC8 7 TRP C 3 LYS C 6 IOD C 103 CRYST1 89.587 89.587 71.592 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013968 0.00000