data_6U97 # _entry.id 6U97 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.323 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6U97 WWPDB D_1000244203 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6U97 _pdbx_database_status.recvd_initial_deposition_date 2019-09-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Pokkuluri, P.R.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0001-5301-9483 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Front Microbiol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1664-302X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 2941 _citation.page_last 2941 _citation.title ;Modulation of the Redox Potential and Electron/Proton Transfer Mechanisms in the Outer Membrane Cytochrome OmcF FromGeobacter sulfurreducens. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3389/fmicb.2019.02941 _citation.pdbx_database_id_PubMed 32010071 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Teixeira, L.R.' 1 ? primary 'Cordas, C.M.' 2 ? primary 'Fonseca, M.P.' 3 ? primary 'Duke, N.E.C.' 4 ? primary 'Pokkuluri, P.R.' 5 ? primary 'Salgueiro, C.A.' 6 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6U97 _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.186 _cell.length_a_esd ? _cell.length_b 39.019 _cell.length_b_esd ? _cell.length_c 49.218 _cell.length_c_esd ? _cell.volume 73333.813 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lipoprotein cytochrome c, 1 heme-binding site' 8427.596 1 ? H47I ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 4 water nat water 18.015 92 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AGAGGGELFATHCAGCHPQGGNTVIPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFGEAMIPPADALKIGEYVVAS FP ; _entity_poly.pdbx_seq_one_letter_code_can ;AGAGGGELFATHCAGCHPQGGNTVIPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFGEAMIPPADALKIGEYVVAS FP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLY n 1 3 ALA n 1 4 GLY n 1 5 GLY n 1 6 GLY n 1 7 GLU n 1 8 LEU n 1 9 PHE n 1 10 ALA n 1 11 THR n 1 12 HIS n 1 13 CYS n 1 14 ALA n 1 15 GLY n 1 16 CYS n 1 17 HIS n 1 18 PRO n 1 19 GLN n 1 20 GLY n 1 21 GLY n 1 22 ASN n 1 23 THR n 1 24 VAL n 1 25 ILE n 1 26 PRO n 1 27 GLU n 1 28 LYS n 1 29 THR n 1 30 LEU n 1 31 ALA n 1 32 ARG n 1 33 ALA n 1 34 ARG n 1 35 ARG n 1 36 GLU n 1 37 ALA n 1 38 ASN n 1 39 GLY n 1 40 ILE n 1 41 ARG n 1 42 THR n 1 43 VAL n 1 44 ARG n 1 45 ASP n 1 46 VAL n 1 47 ALA n 1 48 ALA n 1 49 TYR n 1 50 ILE n 1 51 ARG n 1 52 ASN n 1 53 PRO n 1 54 GLY n 1 55 PRO n 1 56 GLY n 1 57 MET n 1 58 PRO n 1 59 ALA n 1 60 PHE n 1 61 GLY n 1 62 GLU n 1 63 ALA n 1 64 MET n 1 65 ILE n 1 66 PRO n 1 67 PRO n 1 68 ALA n 1 69 ASP n 1 70 ALA n 1 71 LEU n 1 72 LYS n 1 73 ILE n 1 74 GLY n 1 75 GLU n 1 76 TYR n 1 77 VAL n 1 78 VAL n 1 79 ALA n 1 80 SER n 1 81 PHE n 1 82 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 82 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'omcF, GSU2432' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 51573 / DSM 12127 / PCA' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243231 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q74AE4_GEOSL _struct_ref.pdbx_db_accession Q74AE4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GAGGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFGEAMIPPADALKIGEYVVASF P ; _struct_ref.pdbx_align_begin 24 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6U97 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 82 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q74AE4 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 104 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 104 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6U97 ALA A 1 ? UNP Q74AE4 ? ? 'expression tag' 23 1 1 6U97 ILE A 25 ? UNP Q74AE4 HIS 47 'engineered mutation' 47 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6U97 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.44 _exptl_crystal.description 'needle clusters' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.8 M ammonium sulfate, 0.1 M Hepes pH 7.5, 2% (v/v) PEG400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-11-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91840 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91840 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 10.02 _reflns.entry_id 6U97 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.00 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31673 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 42.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.929 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.056 _reflns.pdbx_Rpim_I_all 0.016 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.13 _reflns_shell.d_res_low 1.15 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1901 _reflns_shell.percent_possible_all 95 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.304 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.958 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.327 _reflns_shell.pdbx_Rpim_I_all 0.114 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.963 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 13.97 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6U97 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.13 _refine.ls_d_res_low 23.87 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18212 _refine.ls_number_reflns_R_free 897 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 64.65 _refine.ls_percent_reflns_R_free 4.93 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1275 _refine.ls_R_factor_R_free 0.1528 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1263 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.42 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.3043 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0605 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.13 _refine_hist.d_res_low 23.87 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 719 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 622 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0137 ? 665 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.2754 ? 925 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0882 ? 92 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0121 ? 120 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 15.5125 ? 354 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.13 1.20 . . 29 555 12.69 . . . 0.2189 . 0.1672 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.20 1.29 . . 73 1385 31.43 . . . 0.1362 . 0.0925 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.29 1.42 . . 146 2789 63.24 . . . 0.1331 . 0.0868 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.42 1.63 . . 185 3691 82.98 . . . 0.1242 . 0.0875 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.63 2.05 . . 235 4269 95.59 . . . 0.1310 . 0.1200 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.05 23.87 . . 229 4626 99.06 . . . 0.1710 . 0.1421 . . . . . . . . . . # _struct.entry_id 6U97 _struct.title 'Structure of OmcF_H47I mutant' _struct.pdbx_descriptor 'Lipoprotein cytochrome c, 1 heme-binding site' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6U97 _struct_keywords.text 'OmcF, redox-Bohr effect, ELECTRON TRANSPORT' _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 4 ? CYS A 13 ? GLY A 26 CYS A 35 1 ? 10 HELX_P HELX_P2 AA2 HIS A 17 ? GLY A 21 ? HIS A 39 GLY A 43 5 ? 5 HELX_P HELX_P3 AA3 ALA A 31 ? ASN A 38 ? ALA A 53 ASN A 60 1 ? 8 HELX_P HELX_P4 AA4 THR A 42 ? ILE A 50 ? THR A 64 ILE A 72 1 ? 9 HELX_P HELX_P5 AA5 PRO A 66 ? PHE A 81 ? PRO A 88 PHE A 103 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale none ? A CYS 13 SG ? ? ? 1_555 C HEM . CAB ? ? A CYS 35 A HEM 202 1_555 ? ? ? ? ? ? ? 1.871 ? covale2 covale none ? A CYS 16 SG ? ? ? 1_555 C HEM . CAC ? ? A CYS 38 A HEM 202 1_555 ? ? ? ? ? ? ? 1.955 ? metalc1 metalc ? ? A HIS 17 NE2 ? ? ? 1_555 C HEM . FE ? ? A HIS 39 A HEM 202 1_555 ? ? ? ? ? ? ? 2.040 ? metalc2 metalc ? ? A MET 57 SD ? ? ? 1_555 C HEM . FE ? ? A MET 79 A HEM 202 1_555 ? ? ? ? ? ? ? 2.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 8 'binding site for residue SO4 A 201' AC2 Software A HEM 202 ? 24 'binding site for residue HEM A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLY A 4 ? GLY A 26 . ? 4_545 ? 2 AC1 8 THR A 42 ? THR A 64 . ? 1_555 ? 3 AC1 8 ARG A 44 ? ARG A 66 . ? 1_555 ? 4 AC1 8 HOH D . ? HOH A 318 . ? 1_555 ? 5 AC1 8 HOH D . ? HOH A 319 . ? 1_555 ? 6 AC1 8 HOH D . ? HOH A 338 . ? 3_645 ? 7 AC1 8 HOH D . ? HOH A 352 . ? 4_545 ? 8 AC1 8 HOH D . ? HOH A 355 . ? 4_545 ? 9 AC2 24 HIS A 12 ? HIS A 34 . ? 1_555 ? 10 AC2 24 CYS A 13 ? CYS A 35 . ? 1_555 ? 11 AC2 24 CYS A 16 ? CYS A 38 . ? 1_555 ? 12 AC2 24 HIS A 17 ? HIS A 39 . ? 1_555 ? 13 AC2 24 ASN A 22 ? ASN A 44 . ? 1_555 ? 14 AC2 24 ILE A 25 ? ILE A 47 . ? 1_555 ? 15 AC2 24 LYS A 28 ? LYS A 50 . ? 1_555 ? 16 AC2 24 LEU A 30 ? LEU A 52 . ? 1_555 ? 17 AC2 24 ASN A 38 ? ASN A 60 . ? 1_555 ? 18 AC2 24 ILE A 40 ? ILE A 62 . ? 1_555 ? 19 AC2 24 TYR A 49 ? TYR A 71 . ? 1_555 ? 20 AC2 24 ILE A 50 ? ILE A 72 . ? 1_555 ? 21 AC2 24 GLY A 54 ? GLY A 76 . ? 1_555 ? 22 AC2 24 PRO A 55 ? PRO A 77 . ? 1_555 ? 23 AC2 24 GLY A 56 ? GLY A 78 . ? 1_555 ? 24 AC2 24 MET A 57 ? MET A 79 . ? 1_555 ? 25 AC2 24 PRO A 58 ? PRO A 80 . ? 1_555 ? 26 AC2 24 PHE A 60 ? PHE A 82 . ? 1_555 ? 27 AC2 24 ILE A 73 ? ILE A 95 . ? 1_555 ? 28 AC2 24 HOH D . ? HOH A 308 . ? 1_555 ? 29 AC2 24 HOH D . ? HOH A 314 . ? 1_555 ? 30 AC2 24 HOH D . ? HOH A 320 . ? 1_555 ? 31 AC2 24 HOH D . ? HOH A 324 . ? 1_555 ? 32 AC2 24 HOH D . ? HOH A 326 . ? 1_555 ? # _atom_sites.entry_id 6U97 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.026188 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025629 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020318 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? FE ? ? 20.90327 4.99816 ? ? 2.55100 38.46870 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 23 23 ALA ALA A . n A 1 2 GLY 2 24 24 GLY GLY A . n A 1 3 ALA 3 25 25 ALA ALA A . n A 1 4 GLY 4 26 26 GLY GLY A . n A 1 5 GLY 5 27 27 GLY GLY A . n A 1 6 GLY 6 28 28 GLY GLY A . n A 1 7 GLU 7 29 29 GLU GLU A . n A 1 8 LEU 8 30 30 LEU LEU A . n A 1 9 PHE 9 31 31 PHE PHE A . n A 1 10 ALA 10 32 32 ALA ALA A . n A 1 11 THR 11 33 33 THR THR A . n A 1 12 HIS 12 34 34 HIS HIS A . n A 1 13 CYS 13 35 35 CYS CYS A . n A 1 14 ALA 14 36 36 ALA ALA A . n A 1 15 GLY 15 37 37 GLY GLY A . n A 1 16 CYS 16 38 38 CYS CYS A . n A 1 17 HIS 17 39 39 HIS HIS A . n A 1 18 PRO 18 40 40 PRO PRO A . n A 1 19 GLN 19 41 41 GLN GLN A . n A 1 20 GLY 20 42 42 GLY GLY A . n A 1 21 GLY 21 43 43 GLY GLY A . n A 1 22 ASN 22 44 44 ASN ASN A . n A 1 23 THR 23 45 45 THR THR A . n A 1 24 VAL 24 46 46 VAL VAL A . n A 1 25 ILE 25 47 47 ILE ILE A . n A 1 26 PRO 26 48 48 PRO PRO A . n A 1 27 GLU 27 49 49 GLU GLU A . n A 1 28 LYS 28 50 50 LYS LYS A . n A 1 29 THR 29 51 51 THR THR A . n A 1 30 LEU 30 52 52 LEU LEU A . n A 1 31 ALA 31 53 53 ALA ALA A . n A 1 32 ARG 32 54 54 ARG ARG A . n A 1 33 ALA 33 55 55 ALA ALA A . n A 1 34 ARG 34 56 56 ARG ARG A . n A 1 35 ARG 35 57 57 ARG ARG A . n A 1 36 GLU 36 58 58 GLU GLU A . n A 1 37 ALA 37 59 59 ALA ALA A . n A 1 38 ASN 38 60 60 ASN ASN A . n A 1 39 GLY 39 61 61 GLY GLY A . n A 1 40 ILE 40 62 62 ILE ILE A . n A 1 41 ARG 41 63 63 ARG ARG A . n A 1 42 THR 42 64 64 THR THR A . n A 1 43 VAL 43 65 65 VAL VAL A . n A 1 44 ARG 44 66 66 ARG ARG A . n A 1 45 ASP 45 67 67 ASP ASP A . n A 1 46 VAL 46 68 68 VAL VAL A . n A 1 47 ALA 47 69 69 ALA ALA A . n A 1 48 ALA 48 70 70 ALA ALA A . n A 1 49 TYR 49 71 71 TYR TYR A . n A 1 50 ILE 50 72 72 ILE ILE A . n A 1 51 ARG 51 73 73 ARG ARG A . n A 1 52 ASN 52 74 74 ASN ASN A . n A 1 53 PRO 53 75 75 PRO PRO A . n A 1 54 GLY 54 76 76 GLY GLY A . n A 1 55 PRO 55 77 77 PRO PRO A . n A 1 56 GLY 56 78 78 GLY GLY A . n A 1 57 MET 57 79 79 MET MET A . n A 1 58 PRO 58 80 80 PRO PRO A . n A 1 59 ALA 59 81 81 ALA ALA A . n A 1 60 PHE 60 82 82 PHE PHE A . n A 1 61 GLY 61 83 83 GLY GLY A . n A 1 62 GLU 62 84 84 GLU GLU A . n A 1 63 ALA 63 85 85 ALA ALA A . n A 1 64 MET 64 86 86 MET MET A . n A 1 65 ILE 65 87 87 ILE ILE A . n A 1 66 PRO 66 88 88 PRO PRO A . n A 1 67 PRO 67 89 89 PRO PRO A . n A 1 68 ALA 68 90 90 ALA ALA A . n A 1 69 ASP 69 91 91 ASP ASP A . n A 1 70 ALA 70 92 92 ALA ALA A . n A 1 71 LEU 71 93 93 LEU LEU A . n A 1 72 LYS 72 94 94 LYS LYS A . n A 1 73 ILE 73 95 95 ILE ILE A . n A 1 74 GLY 74 96 96 GLY GLY A . n A 1 75 GLU 75 97 97 GLU GLU A . n A 1 76 TYR 76 98 98 TYR TYR A . n A 1 77 VAL 77 99 99 VAL VAL A . n A 1 78 VAL 78 100 100 VAL VAL A . n A 1 79 ALA 79 101 101 ALA ALA A . n A 1 80 SER 80 102 102 SER SER A . n A 1 81 PHE 81 103 103 PHE PHE A . n A 1 82 PRO 82 104 104 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 200 SO4 SO4 A . C 3 HEM 1 202 199 HEM HEM A . D 4 HOH 1 301 56 HOH HOH A . D 4 HOH 2 302 88 HOH HOH A . D 4 HOH 3 303 58 HOH HOH A . D 4 HOH 4 304 98 HOH HOH A . D 4 HOH 5 305 37 HOH HOH A . D 4 HOH 6 306 25 HOH HOH A . D 4 HOH 7 307 103 HOH HOH A . D 4 HOH 8 308 6 HOH HOH A . D 4 HOH 9 309 59 HOH HOH A . D 4 HOH 10 310 44 HOH HOH A . D 4 HOH 11 311 49 HOH HOH A . D 4 HOH 12 312 83 HOH HOH A . D 4 HOH 13 313 9 HOH HOH A . D 4 HOH 14 314 3 HOH HOH A . D 4 HOH 15 315 72 HOH HOH A . D 4 HOH 16 316 15 HOH HOH A . D 4 HOH 17 317 105 HOH HOH A . D 4 HOH 18 318 106 HOH HOH A . D 4 HOH 19 319 8 HOH HOH A . D 4 HOH 20 320 12 HOH HOH A . D 4 HOH 21 321 22 HOH HOH A . D 4 HOH 22 322 51 HOH HOH A . D 4 HOH 23 323 36 HOH HOH A . D 4 HOH 24 324 11 HOH HOH A . D 4 HOH 25 325 14 HOH HOH A . D 4 HOH 26 326 5 HOH HOH A . D 4 HOH 27 327 17 HOH HOH A . D 4 HOH 28 328 92 HOH HOH A . D 4 HOH 29 329 60 HOH HOH A . D 4 HOH 30 330 68 HOH HOH A . D 4 HOH 31 331 54 HOH HOH A . D 4 HOH 32 332 13 HOH HOH A . D 4 HOH 33 333 87 HOH HOH A . D 4 HOH 34 334 102 HOH HOH A . D 4 HOH 35 335 41 HOH HOH A . D 4 HOH 36 336 46 HOH HOH A . D 4 HOH 37 337 81 HOH HOH A . D 4 HOH 38 338 18 HOH HOH A . D 4 HOH 39 339 19 HOH HOH A . D 4 HOH 40 340 64 HOH HOH A . D 4 HOH 41 341 104 HOH HOH A . D 4 HOH 42 342 27 HOH HOH A . D 4 HOH 43 343 4 HOH HOH A . D 4 HOH 44 344 2 HOH HOH A . D 4 HOH 45 345 65 HOH HOH A . D 4 HOH 46 346 1 HOH HOH A . D 4 HOH 47 347 34 HOH HOH A . D 4 HOH 48 348 40 HOH HOH A . D 4 HOH 49 349 26 HOH HOH A . D 4 HOH 50 350 29 HOH HOH A . D 4 HOH 51 351 82 HOH HOH A . D 4 HOH 52 352 24 HOH HOH A . D 4 HOH 53 353 77 HOH HOH A . D 4 HOH 54 354 55 HOH HOH A . D 4 HOH 55 355 32 HOH HOH A . D 4 HOH 56 356 67 HOH HOH A . D 4 HOH 57 357 50 HOH HOH A . D 4 HOH 58 358 35 HOH HOH A . D 4 HOH 59 359 10 HOH HOH A . D 4 HOH 60 360 38 HOH HOH A . D 4 HOH 61 361 62 HOH HOH A . D 4 HOH 62 362 28 HOH HOH A . D 4 HOH 63 363 30 HOH HOH A . D 4 HOH 64 364 43 HOH HOH A . D 4 HOH 65 365 16 HOH HOH A . D 4 HOH 66 366 31 HOH HOH A . D 4 HOH 67 367 47 HOH HOH A . D 4 HOH 68 368 42 HOH HOH A . D 4 HOH 69 369 21 HOH HOH A . D 4 HOH 70 370 93 HOH HOH A . D 4 HOH 71 371 53 HOH HOH A . D 4 HOH 72 372 95 HOH HOH A . D 4 HOH 73 373 96 HOH HOH A . D 4 HOH 74 374 66 HOH HOH A . D 4 HOH 75 375 75 HOH HOH A . D 4 HOH 76 376 79 HOH HOH A . D 4 HOH 77 377 100 HOH HOH A . D 4 HOH 78 378 86 HOH HOH A . D 4 HOH 79 379 97 HOH HOH A . D 4 HOH 80 380 99 HOH HOH A . D 4 HOH 81 381 94 HOH HOH A . D 4 HOH 82 382 80 HOH HOH A . D 4 HOH 83 383 39 HOH HOH A . D 4 HOH 84 384 33 HOH HOH A . D 4 HOH 85 385 23 HOH HOH A . D 4 HOH 86 386 61 HOH HOH A . D 4 HOH 87 387 57 HOH HOH A . D 4 HOH 88 388 48 HOH HOH A . D 4 HOH 89 389 85 HOH HOH A . D 4 HOH 90 390 89 HOH HOH A . D 4 HOH 91 391 101 HOH HOH A . D 4 HOH 92 392 76 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 17 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 NA ? C HEM . ? A HEM 202 ? 1_555 89.7 ? 2 NE2 ? A HIS 17 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 NB ? C HEM . ? A HEM 202 ? 1_555 89.0 ? 3 NA ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 NB ? C HEM . ? A HEM 202 ? 1_555 91.4 ? 4 NE2 ? A HIS 17 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 NC ? C HEM . ? A HEM 202 ? 1_555 89.7 ? 5 NA ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 NC ? C HEM . ? A HEM 202 ? 1_555 179.4 ? 6 NB ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 NC ? C HEM . ? A HEM 202 ? 1_555 88.8 ? 7 NE2 ? A HIS 17 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 ND ? C HEM . ? A HEM 202 ? 1_555 90.5 ? 8 NA ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 ND ? C HEM . ? A HEM 202 ? 1_555 88.5 ? 9 NB ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 ND ? C HEM . ? A HEM 202 ? 1_555 179.5 ? 10 NC ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 ND ? C HEM . ? A HEM 202 ? 1_555 91.3 ? 11 NE2 ? A HIS 17 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 SD ? A MET 57 ? A MET 79 ? 1_555 177.4 ? 12 NA ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 SD ? A MET 57 ? A MET 79 ? 1_555 87.8 ? 13 NB ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 SD ? A MET 57 ? A MET 79 ? 1_555 91.7 ? 14 NC ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 SD ? A MET 57 ? A MET 79 ? 1_555 92.8 ? 15 ND ? C HEM . ? A HEM 202 ? 1_555 FE ? C HEM . ? A HEM 202 ? 1_555 SD ? A MET 57 ? A MET 79 ? 1_555 88.8 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2020-02-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.15.2_3472 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 6U97 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SG A CYS 35 ? ? HAB A HEM 202 ? ? 1.51 2 1 HH12 A ARG 57 ? ? O A HOH 301 ? ? 1.60 3 1 O A HOH 307 ? ? O A HOH 317 ? ? 1.86 4 1 O A HOH 353 ? ? O A HOH 362 ? ? 2.12 5 1 O A HOH 372 ? ? O A HOH 375 ? ? 2.16 6 1 O A HOH 328 ? ? O A HOH 376 ? ? 2.18 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 74 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -152.71 _pdbx_validate_torsion.psi 72.64 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 392 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.85 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 29 ? CD ? A GLU 7 CD 2 1 Y 1 A GLU 29 ? OE1 ? A GLU 7 OE1 3 1 Y 1 A GLU 29 ? OE2 ? A GLU 7 OE2 4 1 Y 1 A GLU 49 ? CD ? A GLU 27 CD 5 1 Y 1 A GLU 49 ? OE1 ? A GLU 27 OE1 6 1 Y 1 A GLU 49 ? OE2 ? A GLU 27 OE2 7 1 Y 1 A ARG 63 ? CD ? A ARG 41 CD 8 1 Y 1 A ARG 63 ? NE ? A ARG 41 NE 9 1 Y 1 A ARG 63 ? CZ ? A ARG 41 CZ 10 1 Y 1 A ARG 63 ? NH1 ? A ARG 41 NH1 11 1 Y 1 A ARG 63 ? NH2 ? A ARG 41 NH2 # _pdbx_audit_support.funding_organization 'Department of Energy (DOE, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id HEM _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id HEM _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'PROTOPORPHYRIN IX CONTAINING FE' HEM 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 1 # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 #