HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-SEP-19 6U9M TITLE MLL1 SET N3861I/Q3867L BOUND TO INHIBITOR 16 (TC-5109) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.43; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.M.PETRUNAK,J.A.STUCKEY REVDAT 2 11-OCT-23 6U9M 1 REMARK REVDAT 1 01-JUL-20 6U9M 0 JRNL AUTH T.R.CHERN,L.LIU,E.PETRUNAK,J.A.STUCKEY,M.WANG,D.BERNARD, JRNL AUTH 2 H.ZHOU,S.LEE,Y.DOU,S.WANG JRNL TITL DISCOVERY OF POTENT SMALL-MOLECULE INHIBITORS OF MLL JRNL TITL 2 METHYLTRANSFERASE. JRNL REF ACS MED.CHEM.LETT. V. 11 1348 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 32551023 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00229 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.58 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 447 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2270 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 422 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE : 0.2621 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.59 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 25 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65590 REMARK 3 B22 (A**2) : 0.65590 REMARK 3 B33 (A**2) : -1.31180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.208 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.173 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.210 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.174 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2513 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3454 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 865 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 474 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2513 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 321 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2954 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.14 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.32 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|3814 - A|3826 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.2901 3.5008 3.8112 REMARK 3 T TENSOR REMARK 3 T11: 0.0189 T22: 0.1927 REMARK 3 T33: 0.0993 T12: -0.0194 REMARK 3 T13: 0.0984 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 4.0318 L22: -1.6290 REMARK 3 L33: 0.9092 L12: -2.5064 REMARK 3 L13: 1.8981 L23: 1.5253 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: -0.1106 S13: 0.1906 REMARK 3 S21: 0.0305 S22: 0.0006 S23: 0.0022 REMARK 3 S31: -0.4340 S32: -0.1553 S33: -0.0796 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|3827 - A|3847 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.4907 -7.9222 8.7671 REMARK 3 T TENSOR REMARK 3 T11: -0.2547 T22: -0.0216 REMARK 3 T33: -0.1812 T12: 0.0220 REMARK 3 T13: -0.0026 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 8.9236 L22: 3.4767 REMARK 3 L33: 7.7014 L12: -2.7960 REMARK 3 L13: 2.2853 L23: -2.7073 REMARK 3 S TENSOR REMARK 3 S11: 0.1293 S12: 0.6811 S13: -0.0330 REMARK 3 S21: -0.0533 S22: -0.0931 S23: 0.2726 REMARK 3 S31: 0.1892 S32: 0.0357 S33: -0.0362 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|3848 - A|3909 } REMARK 3 ORIGIN FOR THE GROUP (A): 27.7866 -13.2593 15.4530 REMARK 3 T TENSOR REMARK 3 T11: -0.0884 T22: 0.0598 REMARK 3 T33: 0.0142 T12: -0.0147 REMARK 3 T13: -0.0016 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 5.3424 L22: 4.8285 REMARK 3 L33: 1.0948 L12: 0.4467 REMARK 3 L13: -0.0945 L23: -2.6313 REMARK 3 S TENSOR REMARK 3 S11: 0.1047 S12: 0.5078 S13: -0.5443 REMARK 3 S21: 0.2234 S22: -0.3786 S23: -0.3634 REMARK 3 S31: 0.0197 S32: 0.2033 S33: 0.2739 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|3910 - A|3944 } REMARK 3 ORIGIN FOR THE GROUP (A): 25.1679 -8.4512 2.4171 REMARK 3 T TENSOR REMARK 3 T11: -0.4162 T22: 0.2492 REMARK 3 T33: -0.3451 T12: 0.1036 REMARK 3 T13: -0.0095 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 12.4987 L22: 0.5482 REMARK 3 L33: 5.6770 L12: -0.0266 REMARK 3 L13: 1.0564 L23: -1.9539 REMARK 3 S TENSOR REMARK 3 S11: 0.0572 S12: 1.0900 S13: 0.4697 REMARK 3 S21: -0.1463 S22: -0.1220 S23: -0.0030 REMARK 3 S31: -0.0601 S32: 0.7844 S33: 0.0648 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|3945 - A|3968 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.6500 -25.8245 2.0132 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.2293 REMARK 3 T33: -0.0845 T12: 0.0251 REMARK 3 T13: 0.0231 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: -3.2582 L22: 10.0162 REMARK 3 L33: 0.7834 L12: 0.7818 REMARK 3 L13: -4.1985 L23: 5.1265 REMARK 3 S TENSOR REMARK 3 S11: 0.2356 S12: -0.1589 S13: -0.0314 REMARK 3 S21: -0.1703 S22: -0.1367 S23: -0.0793 REMARK 3 S31: 0.1832 S32: 0.2001 S33: -0.0989 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|3813 - B|3828 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.3407 -19.0144 -4.1647 REMARK 3 T TENSOR REMARK 3 T11: -0.0325 T22: 0.2480 REMARK 3 T33: 0.0764 T12: 0.0160 REMARK 3 T13: -0.1050 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 3.7021 L22: 0.9114 REMARK 3 L33: 0.0000 L12: 0.3549 REMARK 3 L13: 1.8116 L23: -1.7602 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.1127 S13: -0.0287 REMARK 3 S21: 0.0320 S22: 0.1288 S23: 0.0421 REMARK 3 S31: 0.2907 S32: -0.0443 S33: -0.1736 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { B|3829 - B|3870 } REMARK 3 ORIGIN FOR THE GROUP (A): -5.4634 -6.4606 -10.4142 REMARK 3 T TENSOR REMARK 3 T11: -0.1228 T22: 0.0914 REMARK 3 T33: -0.1025 T12: -0.0173 REMARK 3 T13: -0.0114 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 7.9943 L22: 3.3841 REMARK 3 L33: 3.4282 L12: 0.9517 REMARK 3 L13: -2.8556 L23: -2.7364 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: -1.0287 S13: 0.0545 REMARK 3 S21: -0.0817 S22: -0.1406 S23: -0.0510 REMARK 3 S31: -0.0360 S32: 0.3128 S33: 0.0612 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|3871 - B|3881 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.5003 3.0294 -26.9779 REMARK 3 T TENSOR REMARK 3 T11: 0.0012 T22: -0.1792 REMARK 3 T33: -0.0468 T12: 0.1125 REMARK 3 T13: -0.0102 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 0.4590 L22: -0.2635 REMARK 3 L33: 6.0103 L12: -0.0957 REMARK 3 L13: -1.2586 L23: -2.2102 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: -0.0106 S13: -0.1699 REMARK 3 S21: -0.2063 S22: -0.1171 S23: 0.1190 REMARK 3 S31: 0.0235 S32: -0.0564 S33: 0.0729 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { B|3882 - B|3945 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.3091 -5.0330 -7.2631 REMARK 3 T TENSOR REMARK 3 T11: -0.2540 T22: 0.1603 REMARK 3 T33: -0.1651 T12: -0.0601 REMARK 3 T13: -0.0077 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 8.2757 L22: 2.0955 REMARK 3 L33: 4.0732 L12: 0.0214 REMARK 3 L13: -0.8805 L23: -1.8335 REMARK 3 S TENSOR REMARK 3 S11: 0.2741 S12: -1.3443 S13: 0.4556 REMARK 3 S21: 0.0052 S22: -0.2534 S23: -0.1112 REMARK 3 S31: -0.1355 S32: 0.6345 S33: -0.0207 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|3946 - B|3968 } REMARK 3 ORIGIN FOR THE GROUP (A): -8.6790 9.9766 -2.4708 REMARK 3 T TENSOR REMARK 3 T11: 0.0772 T22: 0.1450 REMARK 3 T33: -0.1746 T12: -0.0153 REMARK 3 T13: 0.0009 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 2.7662 L22: 10.5698 REMARK 3 L33: 0.0000 L12: -1.3155 REMARK 3 L13: 2.2574 L23: 7.6042 REMARK 3 S TENSOR REMARK 3 S11: 0.1806 S12: 0.0003 S13: 0.0036 REMARK 3 S21: -0.1855 S22: -0.0946 S23: -0.0030 REMARK 3 S31: -0.1500 S32: 0.1121 S33: -0.0860 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22301 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.68700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5F5E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M SODIUM MALONATE PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.55133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.27567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3812 REMARK 465 ASP A 3813 REMARK 465 PRO A 3947 REMARK 465 ILE A 3948 REMARK 465 GLU A 3949 REMARK 465 ASP A 3950 REMARK 465 ALA A 3951 REMARK 465 SER A 3952 REMARK 465 ASN A 3953 REMARK 465 ASN A 3969 REMARK 465 SER B 3812 REMARK 465 PRO B 3947 REMARK 465 ILE B 3948 REMARK 465 GLU B 3949 REMARK 465 ASP B 3950 REMARK 465 ALA B 3951 REMARK 465 SER B 3952 REMARK 465 ASN B 3953 REMARK 465 ASN B 3969 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A3821 CG CD NE CZ NH1 NH2 REMARK 470 HIS A3822 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A3824 CG CD CE NZ REMARK 470 LYS A3825 CG CD CE NZ REMARK 470 LYS A3828 CG CD CE NZ REMARK 470 GLU A3829 CG CD OE1 OE2 REMARK 470 ARG A3835 CD NE CZ NH1 NH2 REMARK 470 ASP A3921 CG OD1 OD2 REMARK 470 LYS A3945 CG CD CE NZ REMARK 470 PHE A3946 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A3954 CG CD CE NZ REMARK 470 LEU A3955 CG CD1 CD2 REMARK 470 LYS A3962 CD CE NZ REMARK 470 ARG A3965 CG CD NE CZ NH1 NH2 REMARK 470 ASP B3813 CG OD1 OD2 REMARK 470 MET B3818 CG SD CE REMARK 470 ARG B3821 CG CD NE CZ NH1 NH2 REMARK 470 LYS B3824 CG CD CE NZ REMARK 470 LYS B3825 CG CD CE NZ REMARK 470 LYS B3828 CG CD CE NZ REMARK 470 GLU B3829 CG CD OE1 OE2 REMARK 470 ASP B3921 CG OD1 OD2 REMARK 470 LYS B3945 CG CD CE NZ REMARK 470 LYS B3954 CG CD CE NZ REMARK 470 LEU B3955 CG CD1 CD2 REMARK 470 LYS B3962 CG CD CE NZ REMARK 470 ARG B3965 CG CD NE CZ NH1 NH2 REMARK 470 LYS B3966 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A3963 33.67 -92.55 REMARK 500 LYS A3966 -8.31 69.80 REMARK 500 PHE B3820 30.16 -73.20 REMARK 500 HIS B3839 136.38 -171.28 REMARK 500 LYS B3963 35.94 -92.74 REMARK 500 LYS B3966 -7.59 66.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A3909 SG REMARK 620 2 CYS A3957 SG 110.1 REMARK 620 3 CYS A3959 SG 117.0 109.0 REMARK 620 4 CYS A3964 SG 106.3 107.6 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B3909 SG REMARK 620 2 CYS B3957 SG 110.1 REMARK 620 3 CYS B3959 SG 115.4 111.5 REMARK 620 4 CYS B3964 SG 106.4 109.6 103.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q2M A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q2M B 4003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U9K RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO INHIBITOR 18 (TC-5153) DBREF 6U9M A 3813 3969 UNP B4DIJ7 B4DIJ7_HUMAN 167 323 DBREF 6U9M B 3813 3969 UNP B4DIJ7 B4DIJ7_HUMAN 167 323 SEQADV 6U9M SER A 3812 UNP B4DIJ7 EXPRESSION TAG SEQADV 6U9M ILE A 3861 UNP B4DIJ7 ASN 215 ENGINEERED MUTATION SEQADV 6U9M LEU A 3867 UNP B4DIJ7 GLN 221 ENGINEERED MUTATION SEQADV 6U9M SER B 3812 UNP B4DIJ7 EXPRESSION TAG SEQADV 6U9M ILE B 3861 UNP B4DIJ7 ASN 215 ENGINEERED MUTATION SEQADV 6U9M LEU B 3867 UNP B4DIJ7 GLN 221 ENGINEERED MUTATION SEQRES 1 A 158 SER ASP LEU PRO MET PRO MET ARG PHE ARG HIS LEU LYS SEQRES 2 A 158 LYS THR SER LYS GLU ALA VAL GLY VAL TYR ARG SER PRO SEQRES 3 A 158 ILE HIS GLY ARG GLY LEU PHE CYS LYS ARG ASN ILE ASP SEQRES 4 A 158 ALA GLY GLU MET VAL ILE GLU TYR ALA GLY ILE VAL ILE SEQRES 5 A 158 ARG SER ILE LEU THR ASP LYS ARG GLU LYS TYR TYR ASP SEQRES 6 A 158 SER LYS GLY ILE GLY CYS TYR MET PHE ARG ILE ASP ASP SEQRES 7 A 158 SER GLU VAL VAL ASP ALA THR MET HIS GLY ASN ALA ALA SEQRES 8 A 158 ARG PHE ILE ASN HIS SER CYS GLU PRO ASN CYS TYR SER SEQRES 9 A 158 ARG VAL ILE ASN ILE ASP GLY GLN LYS HIS ILE VAL ILE SEQRES 10 A 158 PHE ALA MET ARG LYS ILE TYR ARG GLY GLU GLU LEU THR SEQRES 11 A 158 TYR ASP TYR LYS PHE PRO ILE GLU ASP ALA SER ASN LYS SEQRES 12 A 158 LEU PRO CYS ASN CYS GLY ALA LYS LYS CYS ARG LYS PHE SEQRES 13 A 158 LEU ASN SEQRES 1 B 158 SER ASP LEU PRO MET PRO MET ARG PHE ARG HIS LEU LYS SEQRES 2 B 158 LYS THR SER LYS GLU ALA VAL GLY VAL TYR ARG SER PRO SEQRES 3 B 158 ILE HIS GLY ARG GLY LEU PHE CYS LYS ARG ASN ILE ASP SEQRES 4 B 158 ALA GLY GLU MET VAL ILE GLU TYR ALA GLY ILE VAL ILE SEQRES 5 B 158 ARG SER ILE LEU THR ASP LYS ARG GLU LYS TYR TYR ASP SEQRES 6 B 158 SER LYS GLY ILE GLY CYS TYR MET PHE ARG ILE ASP ASP SEQRES 7 B 158 SER GLU VAL VAL ASP ALA THR MET HIS GLY ASN ALA ALA SEQRES 8 B 158 ARG PHE ILE ASN HIS SER CYS GLU PRO ASN CYS TYR SER SEQRES 9 B 158 ARG VAL ILE ASN ILE ASP GLY GLN LYS HIS ILE VAL ILE SEQRES 10 B 158 PHE ALA MET ARG LYS ILE TYR ARG GLY GLU GLU LEU THR SEQRES 11 B 158 TYR ASP TYR LYS PHE PRO ILE GLU ASP ALA SER ASN LYS SEQRES 12 B 158 LEU PRO CYS ASN CYS GLY ALA LYS LYS CYS ARG LYS PHE SEQRES 13 B 158 LEU ASN HET ZN A4001 1 HET Q2M A4002 79 HET ZN B4001 1 HET GOL B4002 6 HET Q2M B4003 80 HETNAM ZN ZINC ION HETNAM Q2M 5'-{[(3S)-3-AMINO-3-CARBOXYPROPYL]({1-[(THIOPHEN-2-YL) HETNAM 2 Q2M METHYL]AZETIDIN-3-YL}METHYL)AMINO}-5'-DEOXYADENOSINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 Q2M 2(C23 H32 N8 O5 S) FORMUL 6 GOL C3 H8 O3 FORMUL 8 HOH *164(H2 O) HELIX 1 AA1 PRO A 3815 ARG A 3821 1 7 HELIX 2 AA2 HIS A 3822 ALA A 3830 1 9 HELIX 3 AA3 LEU A 3867 LYS A 3878 1 12 HELIX 4 AA4 ASN A 3900 ILE A 3905 5 6 HELIX 5 AA5 PRO B 3815 PHE B 3820 1 6 HELIX 6 AA6 LYS B 3825 ALA B 3830 1 6 HELIX 7 AA7 LEU B 3867 LYS B 3878 1 12 HELIX 8 AA8 ASN B 3900 ILE B 3905 5 6 SHEET 1 AA1 2 VAL A3831 ARG A3835 0 SHEET 2 AA1 2 ARG A3841 CYS A3845 -1 O PHE A3844 N GLY A3832 SHEET 1 AA2 3 MET A3854 TYR A3858 0 SHEET 2 AA2 3 GLN A3923 ALA A3930 -1 O ILE A3928 N VAL A3855 SHEET 3 AA2 3 CYS A3913 ILE A3920 -1 N ILE A3918 O HIS A3925 SHEET 1 AA3 3 ILE A3861 ARG A3864 0 SHEET 2 AA3 3 GLU A3891 ASP A3894 -1 O VAL A3892 N ILE A3863 SHEET 3 AA3 3 MET A3884 ARG A3886 -1 N PHE A3885 O VAL A3893 SHEET 1 AA4 2 ASN A3906 HIS A3907 0 SHEET 2 AA4 2 THR A3941 TYR A3942 1 O TYR A3942 N ASN A3906 SHEET 1 AA5 4 VAL B3831 ARG B3835 0 SHEET 2 AA5 4 ARG B3841 CYS B3845 -1 O PHE B3844 N GLY B3832 SHEET 3 AA5 4 GLU B3939 TYR B3942 -1 O LEU B3940 N LEU B3843 SHEET 4 AA5 4 ASN B3906 HIS B3907 1 N ASN B3906 O TYR B3942 SHEET 1 AA6 3 MET B3854 TYR B3858 0 SHEET 2 AA6 3 GLN B3923 ALA B3930 -1 O ILE B3928 N VAL B3855 SHEET 3 AA6 3 CYS B3913 ILE B3920 -1 N ILE B3918 O HIS B3925 SHEET 1 AA7 3 ILE B3861 ARG B3864 0 SHEET 2 AA7 3 GLU B3891 ASP B3894 -1 O VAL B3892 N ILE B3863 SHEET 3 AA7 3 MET B3884 ARG B3886 -1 N PHE B3885 O VAL B3893 LINK SG CYS A3909 ZN ZN A4001 1555 1555 2.23 LINK SG CYS A3957 ZN ZN A4001 1555 1555 2.43 LINK SG CYS A3959 ZN ZN A4001 1555 1555 2.26 LINK SG CYS A3964 ZN ZN A4001 1555 1555 2.48 LINK SG CYS B3909 ZN ZN B4001 1555 1555 2.28 LINK SG CYS B3957 ZN ZN B4001 1555 1555 2.37 LINK SG CYS B3959 ZN ZN B4001 1555 1555 2.26 LINK SG CYS B3964 ZN ZN B4001 1555 1555 2.61 SITE 1 AC1 4 CYS A3909 CYS A3957 CYS A3959 CYS A3964 SITE 1 AC2 14 ILE A3838 HIS A3839 ARG A3841 CYS A3882 SITE 2 AC2 14 TYR A3883 PHE A3904 ASN A3906 HIS A3907 SITE 3 AC2 14 TYR A3944 PRO A3956 CYS A3957 ASN A3958 SITE 4 AC2 14 HOH A4111 HOH A4136 SITE 1 AC3 4 CYS B3909 CYS B3957 CYS B3959 CYS B3964 SITE 1 AC4 10 GLY A3937 HOH A4108 HOH A4110 MET B3816 SITE 2 AC4 10 ARG B3819 LYS B3870 LYS B3873 ARG B3916 SITE 3 AC4 10 HOH B4103 HOH B4123 SITE 1 AC5 18 ILE B3838 HIS B3839 GLY B3840 ARG B3841 SITE 2 AC5 18 CYS B3882 TYR B3883 PHE B3904 ASN B3906 SITE 3 AC5 18 HIS B3907 TYR B3944 PRO B3956 CYS B3957 SITE 4 AC5 18 ASN B3958 LEU B3968 HOH B4106 HOH B4127 SITE 5 AC5 18 HOH B4148 HOH B4172 CRYST1 54.810 54.810 105.827 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018245 0.010534 0.000000 0.00000 SCALE2 0.000000 0.021067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009449 0.00000