HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-SEP-19 6U9N TITLE MLL1 SET N3861I/Q3867L BOUND TO INHIBITOR 14 (TC-5139) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.43; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.M.PETRUNAK,J.A.STUCKEY REVDAT 2 11-OCT-23 6U9N 1 REMARK REVDAT 1 01-JUL-20 6U9N 0 JRNL AUTH T.R.CHERN,L.LIU,E.PETRUNAK,J.A.STUCKEY,M.WANG,D.BERNARD, JRNL AUTH 2 H.ZHOU,S.LEE,Y.DOU,S.WANG JRNL TITL DISCOVERY OF POTENT SMALL-MOLECULE INHIBITORS OF MLL JRNL TITL 2 METHYLTRANSFERASE. JRNL REF ACS MED.CHEM.LETT. V. 11 1348 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 32551023 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00229 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1251 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 515 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2726 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 494 REMARK 3 BIN R VALUE (WORKING SET) : 0.2747 REMARK 3 BIN FREE R VALUE : 0.2321 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.08 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 21 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2237 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00630 REMARK 3 B22 (A**2) : -0.00630 REMARK 3 B33 (A**2) : 0.01270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.178 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.150 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.178 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.150 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2432 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3342 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 831 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 455 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2432 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 316 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 8 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 12 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2924 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.09 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.20 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|3814 - A|3824 } REMARK 3 ORIGIN FOR THE GROUP (A): 31.2225 2.8779 3.3403 REMARK 3 T TENSOR REMARK 3 T11: -0.1500 T22: 0.1706 REMARK 3 T33: -0.0425 T12: -0.0591 REMARK 3 T13: 0.1200 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 2.2630 L22: -2.2630 REMARK 3 L33: 0.0000 L12: -1.3066 REMARK 3 L13: -3.6045 L23: -2.2175 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: 0.0403 S13: 0.0846 REMARK 3 S21: 0.0573 S22: -0.0506 S23: -0.0225 REMARK 3 S31: -0.2256 S32: -0.0002 S33: 0.0253 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|3825 - A|3867 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.1401 -7.3405 9.0248 REMARK 3 T TENSOR REMARK 3 T11: -0.1897 T22: 0.1386 REMARK 3 T33: -0.1191 T12: 0.0116 REMARK 3 T13: 0.0326 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 10.1839 L22: 3.4178 REMARK 3 L33: 2.3725 L12: -0.3395 REMARK 3 L13: 3.0940 L23: -2.0780 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: 1.1541 S13: 0.2624 REMARK 3 S21: 0.0392 S22: -0.1519 S23: -0.0168 REMARK 3 S31: 0.0310 S32: 0.2866 S33: 0.0630 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|3868 - A|3886 } REMARK 3 ORIGIN FOR THE GROUP (A): 27.4284 -18.7647 23.1277 REMARK 3 T TENSOR REMARK 3 T11: -0.2255 T22: -0.2332 REMARK 3 T33: -0.1168 T12: -0.0592 REMARK 3 T13: -0.0054 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.0833 L22: 5.3689 REMARK 3 L33: 0.0646 L12: 1.0877 REMARK 3 L13: -1.8267 L23: -4.8153 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: -0.0471 S13: -0.2366 REMARK 3 S21: 0.6441 S22: -0.3387 S23: -0.1589 REMARK 3 S31: 0.2419 S32: -0.0578 S33: 0.2694 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|3887 - A|3945 } REMARK 3 ORIGIN FOR THE GROUP (A): 25.9063 -10.0710 6.4724 REMARK 3 T TENSOR REMARK 3 T11: -0.4054 T22: 0.1164 REMARK 3 T33: -0.2688 T12: 0.0885 REMARK 3 T13: -0.0078 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 6.4498 L22: 3.8492 REMARK 3 L33: 5.6682 L12: 0.7938 REMARK 3 L13: -0.0486 L23: -2.2884 REMARK 3 S TENSOR REMARK 3 S11: 0.1841 S12: 1.3117 S13: -0.2205 REMARK 3 S21: -0.1708 S22: -0.3430 S23: -0.0492 REMARK 3 S31: 0.0638 S32: 0.4996 S33: 0.1589 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|3954 - A|3968 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.0498 -25.9696 1.3832 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.0728 REMARK 3 T33: -0.1806 T12: 0.0233 REMARK 3 T13: 0.0177 T23: -0.0874 REMARK 3 L TENSOR REMARK 3 L11: 0.1729 L22: 7.7048 REMARK 3 L33: 0.0000 L12: 2.8685 REMARK 3 L13: -2.8790 L23: 5.6010 REMARK 3 S TENSOR REMARK 3 S11: 0.1700 S12: 0.0375 S13: -0.0196 REMARK 3 S21: -0.0688 S22: -0.1592 S23: -0.0070 REMARK 3 S31: 0.0620 S32: 0.0860 S33: -0.0108 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|3814 - B|3829 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.7995 -18.7522 -5.0031 REMARK 3 T TENSOR REMARK 3 T11: -0.0113 T22: 0.2587 REMARK 3 T33: 0.1601 T12: 0.0420 REMARK 3 T13: -0.0081 T23: 0.0816 REMARK 3 L TENSOR REMARK 3 L11: 4.0270 L22: 2.1678 REMARK 3 L33: 0.0000 L12: -1.4123 REMARK 3 L13: -0.5234 L23: -1.8105 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.1066 S13: 0.0261 REMARK 3 S21: 0.0751 S22: 0.0798 S23: 0.1712 REMARK 3 S31: 0.3803 S32: 0.0207 S33: -0.1276 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { B|3830 - B|3857 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.2707 -9.0445 -6.3722 REMARK 3 T TENSOR REMARK 3 T11: -0.6559 T22: -0.0317 REMARK 3 T33: -0.3465 T12: -0.0378 REMARK 3 T13: 0.0341 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 10.2479 L22: 6.6752 REMARK 3 L33: 13.0479 L12: 0.5120 REMARK 3 L13: -0.3786 L23: -3.1585 REMARK 3 S TENSOR REMARK 3 S11: 0.3004 S12: -1.2967 S13: -0.3225 REMARK 3 S21: -0.2411 S22: -0.1293 S23: 0.2521 REMARK 3 S31: 0.1072 S32: 0.6047 S33: -0.1711 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|3858 - B|3910 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.2004 -0.5081 -17.7768 REMARK 3 T TENSOR REMARK 3 T11: -0.3065 T22: -0.1652 REMARK 3 T33: -0.1535 T12: 0.0431 REMARK 3 T13: -0.0055 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 4.0891 L22: 7.4725 REMARK 3 L33: 2.0416 L12: 0.7888 REMARK 3 L13: -0.1527 L23: -1.9896 REMARK 3 S TENSOR REMARK 3 S11: 0.1102 S12: -0.3873 S13: 0.6134 REMARK 3 S21: -0.2382 S22: -0.4706 S23: -0.4723 REMARK 3 S31: -0.0009 S32: 0.1350 S33: 0.3604 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { B|3911 - B|3946 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.7541 -7.1578 -2.9577 REMARK 3 T TENSOR REMARK 3 T11: -0.6388 T22: 0.3580 REMARK 3 T33: -0.3749 T12: -0.1596 REMARK 3 T13: 0.0435 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 11.5714 L22: 2.2312 REMARK 3 L33: 8.1425 L12: -1.6218 REMARK 3 L13: 1.0651 L23: -2.4306 REMARK 3 S TENSOR REMARK 3 S11: 0.2377 S12: -1.2174 S13: -0.3235 REMARK 3 S21: 0.1988 S22: -0.2521 S23: -0.0792 REMARK 3 S31: -0.1839 S32: 1.0944 S33: 0.0144 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|3954 - B|3967 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.9115 10.2963 -1.4670 REMARK 3 T TENSOR REMARK 3 T11: 0.0645 T22: 0.0843 REMARK 3 T33: -0.1483 T12: -0.0304 REMARK 3 T13: -0.0174 T23: -0.1058 REMARK 3 L TENSOR REMARK 3 L11: -1.0348 L22: 8.4658 REMARK 3 L33: 0.0000 L12: -1.1069 REMARK 3 L13: 3.1719 L23: 6.9839 REMARK 3 S TENSOR REMARK 3 S11: 0.2093 S12: -0.1061 S13: 0.0266 REMARK 3 S21: -0.0228 S22: -0.1587 S23: -0.0508 REMARK 3 S31: -0.0394 S32: 0.0453 S33: -0.0505 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25728 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57400 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5F5E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M SODIUM MALONATE PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.55467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.27733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3812 REMARK 465 ASP A 3813 REMARK 465 PHE A 3946 REMARK 465 PRO A 3947 REMARK 465 ILE A 3948 REMARK 465 GLU A 3949 REMARK 465 ASP A 3950 REMARK 465 ALA A 3951 REMARK 465 SER A 3952 REMARK 465 ASN A 3953 REMARK 465 ASN A 3969 REMARK 465 SER B 3812 REMARK 465 ASP B 3813 REMARK 465 PRO B 3947 REMARK 465 ILE B 3948 REMARK 465 GLU B 3949 REMARK 465 ASP B 3950 REMARK 465 ALA B 3951 REMARK 465 SER B 3952 REMARK 465 ASN B 3953 REMARK 465 LEU B 3968 REMARK 465 ASN B 3969 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A3814 CG CD1 CD2 REMARK 470 MET A3818 CG SD CE REMARK 470 ARG A3821 CG CD NE CZ NH1 NH2 REMARK 470 HIS A3822 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A3824 CG CD CE NZ REMARK 470 LYS A3825 CG CD CE NZ REMARK 470 LYS A3828 CG CD CE NZ REMARK 470 GLU A3829 CG CD OE1 OE2 REMARK 470 ARG A3835 CD NE CZ NH1 NH2 REMARK 470 PHE A3885 CD2 CE1 CE2 CZ REMARK 470 ASP A3889 CG OD1 OD2 REMARK 470 GLU A3910 CG CD OE1 OE2 REMARK 470 ILE A3920 CG1 CG2 CD1 REMARK 470 LYS A3945 CG CD CE NZ REMARK 470 LYS A3954 CG CD CE NZ REMARK 470 LEU A3955 CG CD1 CD2 REMARK 470 LYS A3962 CG CD CE NZ REMARK 470 LEU A3968 CG CD1 CD2 REMARK 470 LEU B3814 CG CD1 CD2 REMARK 470 MET B3818 CG SD CE REMARK 470 ARG B3821 CG CD NE CZ NH1 NH2 REMARK 470 HIS B3822 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B3824 CG CD CE NZ REMARK 470 LYS B3825 CG CD CE NZ REMARK 470 LYS B3828 CG CD CE NZ REMARK 470 GLU B3829 CG CD OE1 OE2 REMARK 470 LYS B3878 CG CD CE NZ REMARK 470 ASP B3889 CG OD1 OD2 REMARK 470 GLU B3910 CG CD OE1 OE2 REMARK 470 ILE B3920 CG1 CG2 CD1 REMARK 470 LYS B3945 CG CD CE NZ REMARK 470 PHE B3946 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B3954 CG CD CE NZ REMARK 470 LEU B3955 CG CD1 CD2 REMARK 470 LYS B3962 CG CD CE NZ REMARK 470 ARG B3965 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A3820 11.49 -66.50 REMARK 500 HIS A3822 46.10 30.94 REMARK 500 LYS A3963 41.30 -93.52 REMARK 500 LYS A3966 -5.47 64.76 REMARK 500 PHE B3820 7.65 -63.73 REMARK 500 HIS B3822 55.36 30.02 REMARK 500 LYS B3945 56.39 -103.60 REMARK 500 LYS B3963 38.32 -96.29 REMARK 500 LYS B3966 -4.76 62.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A3909 SG REMARK 620 2 CYS A3957 SG 109.8 REMARK 620 3 CYS A3959 SG 116.0 108.7 REMARK 620 4 CYS A3964 SG 108.1 106.3 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B3909 SG REMARK 620 2 CYS B3957 SG 108.2 REMARK 620 3 CYS B3959 SG 114.4 108.7 REMARK 620 4 CYS B3964 SG 106.4 110.1 108.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q34 A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q34 B 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 4002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U9K RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO INHIBITOR 18 (TC-5153) REMARK 900 RELATED ID: 6U9M RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO INHIBITOR 16 (TC-5109) DBREF 6U9N A 3813 3969 UNP B4DIJ7 B4DIJ7_HUMAN 167 323 DBREF 6U9N B 3813 3969 UNP B4DIJ7 B4DIJ7_HUMAN 167 323 SEQADV 6U9N SER A 3812 UNP B4DIJ7 EXPRESSION TAG SEQADV 6U9N ILE A 3861 UNP B4DIJ7 ASN 215 ENGINEERED MUTATION SEQADV 6U9N LEU A 3867 UNP B4DIJ7 GLN 221 ENGINEERED MUTATION SEQADV 6U9N SER B 3812 UNP B4DIJ7 EXPRESSION TAG SEQADV 6U9N ILE B 3861 UNP B4DIJ7 ASN 215 ENGINEERED MUTATION SEQADV 6U9N LEU B 3867 UNP B4DIJ7 GLN 221 ENGINEERED MUTATION SEQRES 1 A 158 SER ASP LEU PRO MET PRO MET ARG PHE ARG HIS LEU LYS SEQRES 2 A 158 LYS THR SER LYS GLU ALA VAL GLY VAL TYR ARG SER PRO SEQRES 3 A 158 ILE HIS GLY ARG GLY LEU PHE CYS LYS ARG ASN ILE ASP SEQRES 4 A 158 ALA GLY GLU MET VAL ILE GLU TYR ALA GLY ILE VAL ILE SEQRES 5 A 158 ARG SER ILE LEU THR ASP LYS ARG GLU LYS TYR TYR ASP SEQRES 6 A 158 SER LYS GLY ILE GLY CYS TYR MET PHE ARG ILE ASP ASP SEQRES 7 A 158 SER GLU VAL VAL ASP ALA THR MET HIS GLY ASN ALA ALA SEQRES 8 A 158 ARG PHE ILE ASN HIS SER CYS GLU PRO ASN CYS TYR SER SEQRES 9 A 158 ARG VAL ILE ASN ILE ASP GLY GLN LYS HIS ILE VAL ILE SEQRES 10 A 158 PHE ALA MET ARG LYS ILE TYR ARG GLY GLU GLU LEU THR SEQRES 11 A 158 TYR ASP TYR LYS PHE PRO ILE GLU ASP ALA SER ASN LYS SEQRES 12 A 158 LEU PRO CYS ASN CYS GLY ALA LYS LYS CYS ARG LYS PHE SEQRES 13 A 158 LEU ASN SEQRES 1 B 158 SER ASP LEU PRO MET PRO MET ARG PHE ARG HIS LEU LYS SEQRES 2 B 158 LYS THR SER LYS GLU ALA VAL GLY VAL TYR ARG SER PRO SEQRES 3 B 158 ILE HIS GLY ARG GLY LEU PHE CYS LYS ARG ASN ILE ASP SEQRES 4 B 158 ALA GLY GLU MET VAL ILE GLU TYR ALA GLY ILE VAL ILE SEQRES 5 B 158 ARG SER ILE LEU THR ASP LYS ARG GLU LYS TYR TYR ASP SEQRES 6 B 158 SER LYS GLY ILE GLY CYS TYR MET PHE ARG ILE ASP ASP SEQRES 7 B 158 SER GLU VAL VAL ASP ALA THR MET HIS GLY ASN ALA ALA SEQRES 8 B 158 ARG PHE ILE ASN HIS SER CYS GLU PRO ASN CYS TYR SER SEQRES 9 B 158 ARG VAL ILE ASN ILE ASP GLY GLN LYS HIS ILE VAL ILE SEQRES 10 B 158 PHE ALA MET ARG LYS ILE TYR ARG GLY GLU GLU LEU THR SEQRES 11 B 158 TYR ASP TYR LYS PHE PRO ILE GLU ASP ALA SER ASN LYS SEQRES 12 B 158 LEU PRO CYS ASN CYS GLY ALA LYS LYS CYS ARG LYS PHE SEQRES 13 B 158 LEU ASN HET Q34 A4001 72 HET ZN A4002 1 HET Q34 B4001 72 HET ZN B4002 1 HETNAM Q34 5'-{[(3S)-3-AMINO-3-CARBOXYPROPYL]({1-[(4- HETNAM 2 Q34 CHLOROPHENYL)METHYL]AZETIDIN-3-YL}METHYL)AMINO}-5'- HETNAM 3 Q34 DEOXYADENOSINE HETNAM ZN ZINC ION FORMUL 3 Q34 2(C25 H33 CL N8 O5) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *191(H2 O) HELIX 1 AA1 PRO A 3815 PHE A 3820 1 6 HELIX 2 AA2 HIS A 3822 ALA A 3830 1 9 HELIX 3 AA3 LEU A 3867 LYS A 3878 1 12 HELIX 4 AA4 ASN A 3900 ILE A 3905 5 6 HELIX 5 AA5 PRO B 3815 PHE B 3820 1 6 HELIX 6 AA6 HIS B 3822 ALA B 3830 1 9 HELIX 7 AA7 LEU B 3867 LYS B 3878 1 12 HELIX 8 AA8 ASN B 3900 ILE B 3905 5 6 SHEET 1 AA1 2 VAL A3831 ARG A3835 0 SHEET 2 AA1 2 ARG A3841 CYS A3845 -1 O PHE A3844 N GLY A3832 SHEET 1 AA2 3 MET A3854 TYR A3858 0 SHEET 2 AA2 3 GLN A3923 ALA A3930 -1 O ILE A3926 N TYR A3858 SHEET 3 AA2 3 CYS A3913 ILE A3920 -1 N ILE A3918 O HIS A3925 SHEET 1 AA3 3 ILE A3861 ARG A3864 0 SHEET 2 AA3 3 GLU A3891 ASP A3894 -1 O VAL A3892 N ILE A3863 SHEET 3 AA3 3 MET A3884 ARG A3886 -1 N PHE A3885 O VAL A3893 SHEET 1 AA4 2 ASN A3906 HIS A3907 0 SHEET 2 AA4 2 THR A3941 TYR A3942 1 O TYR A3942 N ASN A3906 SHEET 1 AA5 4 VAL B3831 ARG B3835 0 SHEET 2 AA5 4 ARG B3841 CYS B3845 -1 O GLY B3842 N TYR B3834 SHEET 3 AA5 4 GLU B3939 TYR B3942 -1 O LEU B3940 N LEU B3843 SHEET 4 AA5 4 ASN B3906 HIS B3907 1 N ASN B3906 O TYR B3942 SHEET 1 AA6 3 MET B3854 GLU B3857 0 SHEET 2 AA6 3 GLN B3923 ALA B3930 -1 O ILE B3928 N VAL B3855 SHEET 3 AA6 3 CYS B3913 ILE B3920 -1 N ILE B3920 O GLN B3923 SHEET 1 AA7 3 ILE B3861 ARG B3864 0 SHEET 2 AA7 3 GLU B3891 ASP B3894 -1 O VAL B3892 N ILE B3863 SHEET 3 AA7 3 MET B3884 ARG B3886 -1 N PHE B3885 O VAL B3893 LINK SG CYS A3909 ZN ZN A4002 1555 1555 2.23 LINK SG CYS A3957 ZN ZN A4002 1555 1555 2.30 LINK SG CYS A3959 ZN ZN A4002 1555 1555 2.27 LINK SG CYS A3964 ZN ZN A4002 1555 1555 2.47 LINK SG CYS B3909 ZN ZN B4002 1555 1555 2.23 LINK SG CYS B3957 ZN ZN B4002 1555 1555 2.34 LINK SG CYS B3959 ZN ZN B4002 1555 1555 2.32 LINK SG CYS B3964 ZN ZN B4002 1555 1555 2.46 SITE 1 AC1 14 ILE A3838 HIS A3839 ARG A3841 CYS A3882 SITE 2 AC1 14 TYR A3883 PHE A3904 ASN A3906 HIS A3907 SITE 3 AC1 14 TYR A3944 PRO A3956 CYS A3957 ASN A3958 SITE 4 AC1 14 HOH A4102 HOH A4130 SITE 1 AC2 4 CYS A3909 CYS A3957 CYS A3959 CYS A3964 SITE 1 AC3 14 ILE B3838 HIS B3839 ARG B3841 CYS B3882 SITE 2 AC3 14 TYR B3883 PHE B3904 ASN B3906 HIS B3907 SITE 3 AC3 14 TYR B3944 PRO B3956 CYS B3957 ASN B3958 SITE 4 AC3 14 HOH B4103 HOH B4140 SITE 1 AC4 4 CYS B3909 CYS B3957 CYS B3959 CYS B3964 CRYST1 54.629 54.629 105.832 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018305 0.010569 0.000000 0.00000 SCALE2 0.000000 0.021137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009449 0.00000