HEADER TRANSCRIPTION/DNA 09-SEP-19 6U9Q TITLE CRYSTAL STRUCTURE ANALYSIS OF DNA-BCL11A ZNF DOMAIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA/LEUKEMIA 11A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-11A,B-CELL CLL/LYMPHOMA 11A,COUP-TF-INTERACTING PROTEIN COMPND 5 1,ECOTROPIC VIRAL INTEGRATION SITE 9 PROTEIN HOMOLOG,EVI-9,ZINC COMPND 6 FINGER PROTEIN 856; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA5; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA3; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL11A, CTIP1, EVI9, KIAA1809, ZNF856; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION FACTOR, DNA-BINDING, ZN FINGER, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.-S.SEO,S.DHE-PAGANON REVDAT 3 23-OCT-24 6U9Q 1 JRNL REVDAT 2 13-MAR-24 6U9Q 1 REMARK REVDAT 1 16-SEP-20 6U9Q 0 JRNL AUTH T.VIENNET,M.YIN,A.JAYARAJ,W.KIM,Z.Y.J.SUN,Y.FUJIWARA, JRNL AUTH 2 K.ZHANG,D.SERUGGIA,H.S.SEO,S.DHE-PAGANON,S.H.ORKIN, JRNL AUTH 3 H.ARTHANARI JRNL TITL STRUCTURAL INSIGHTS INTO THE DNA-BINDING MECHANISM OF JRNL TITL 2 BCL11A: THE INTEGRAL ROLE OF ZNF6 JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL DOI 10.1016/J.STR.2024.09.022 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 30107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 1424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5630 - 3.9421 0.96 2898 154 0.1369 0.1681 REMARK 3 2 3.9421 - 3.1292 0.94 2799 121 0.1646 0.1593 REMARK 3 3 3.1292 - 2.7337 0.96 2845 137 0.1953 0.2250 REMARK 3 4 2.7337 - 2.4837 0.98 2918 126 0.2070 0.2032 REMARK 3 5 2.4837 - 2.3057 0.97 2856 127 0.1909 0.2462 REMARK 3 6 2.3057 - 2.1698 0.99 2912 139 0.1986 0.2343 REMARK 3 7 2.1698 - 2.0611 0.99 2852 168 0.2103 0.2274 REMARK 3 8 2.0611 - 1.9714 0.98 2889 141 0.2554 0.2857 REMARK 3 9 1.9714 - 1.8955 0.98 2847 156 0.2948 0.3119 REMARK 3 10 1.8955 - 1.8301 0.98 2867 155 0.3428 0.3572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8105 54.8438 15.2525 REMARK 3 T TENSOR REMARK 3 T11: 0.4978 T22: 0.5777 REMARK 3 T33: 0.5124 T12: 0.0473 REMARK 3 T13: 0.0497 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.0868 L22: 1.8078 REMARK 3 L33: 0.6417 L12: 0.6095 REMARK 3 L13: 0.3628 L23: 1.0820 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.2956 S13: 0.0985 REMARK 3 S21: 0.2906 S22: 0.0324 S23: 0.4106 REMARK 3 S31: -0.2652 S32: -0.2627 S33: -0.0018 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9260 55.2836 12.0533 REMARK 3 T TENSOR REMARK 3 T11: 0.5158 T22: 0.5302 REMARK 3 T33: 0.6417 T12: 0.0395 REMARK 3 T13: -0.0089 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 1.8481 L22: 1.7099 REMARK 3 L33: 1.6157 L12: 0.3567 REMARK 3 L13: -1.0166 L23: -0.3857 REMARK 3 S TENSOR REMARK 3 S11: -0.1802 S12: -0.3062 S13: -0.0303 REMARK 3 S21: 0.1966 S22: 0.1218 S23: 0.5225 REMARK 3 S31: -0.5427 S32: -0.5043 S33: -0.0013 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 737 THROUGH 770 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8293 63.3446 9.6380 REMARK 3 T TENSOR REMARK 3 T11: 0.5819 T22: 0.4449 REMARK 3 T33: 0.4611 T12: -0.0052 REMARK 3 T13: -0.0206 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 3.3679 L22: 1.8842 REMARK 3 L33: 2.4616 L12: 0.4930 REMARK 3 L13: -1.5539 L23: -1.9415 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.1384 S13: 0.4061 REMARK 3 S21: 0.3743 S22: 0.0627 S23: 0.0232 REMARK 3 S31: -0.6602 S32: 0.2125 S33: 0.0008 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 771 THROUGH 802 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1532 41.3522 6.6023 REMARK 3 T TENSOR REMARK 3 T11: 0.4034 T22: 0.4313 REMARK 3 T33: 0.4458 T12: 0.0100 REMARK 3 T13: 0.0364 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.0822 L22: 2.5514 REMARK 3 L33: 2.9118 L12: -0.7744 REMARK 3 L13: 1.1601 L23: 1.6966 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: -0.2869 S13: -0.5316 REMARK 3 S21: 0.4694 S22: -0.0327 S23: 0.0809 REMARK 3 S31: 0.2584 S32: -0.3586 S33: 0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 803 THROUGH 825 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9840 36.9577 -4.0976 REMARK 3 T TENSOR REMARK 3 T11: 0.5136 T22: 0.6808 REMARK 3 T33: 0.5921 T12: 0.0929 REMARK 3 T13: -0.0831 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.7038 L22: 1.1014 REMARK 3 L33: 0.4675 L12: -0.0789 REMARK 3 L13: -0.2149 L23: 0.5496 REMARK 3 S TENSOR REMARK 3 S11: 0.2667 S12: 0.9501 S13: -0.1148 REMARK 3 S21: -0.9035 S22: -0.1542 S23: 0.7149 REMARK 3 S31: -0.1780 S32: -1.2347 S33: -0.0013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30114 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 47.563 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAMALATE~8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.08000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.50000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.08000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C1309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 726 REMARK 465 PRO A 727 REMARK 465 HIS A 728 REMARK 465 MET A 729 REMARK 465 PRO A 730 REMARK 465 GLY A 731 REMARK 465 ARG A 732 REMARK 465 PRO A 733 REMARK 465 SER A 734 REMARK 465 SER A 735 REMARK 465 LYS A 736 REMARK 465 ARG A 826 REMARK 465 VAL A 827 REMARK 465 LEU A 828 REMARK 465 ASN A 829 REMARK 465 ASN A 830 REMARK 465 ASP A 831 REMARK 465 ILE A 832 REMARK 465 LYS A 833 REMARK 465 THR A 834 REMARK 465 GLU A 835 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 737 CG CD OE1 OE2 REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 470 VAL A 795 CG1 CG2 REMARK 470 LYS A 797 CG CD CE NZ REMARK 470 ASP A 798 CG OD1 OD2 REMARK 470 GLU A 803 CG CD OE1 OE2 REMARK 470 LYS A 820 CG CD CE NZ REMARK 470 ASP A 825 CG OD1 OD2 REMARK 470 DC C 13 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DC C 13 N1 C2 O2 N3 C4 N4 C5 REMARK 470 DC C 13 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1141 O HOH A 1160 1.83 REMARK 500 O HOH A 1132 O HOH A 1158 1.94 REMARK 500 OP2 DT B 3 O HOH B 101 2.08 REMARK 500 O5' DC B 1 O HOH B 102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 5 O3' DG C 5 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 744 SG REMARK 620 2 CYS A 747 SG 115.6 REMARK 620 3 HIS A 760 NE2 108.9 106.7 REMARK 620 4 HIS A 764 NE2 103.0 121.1 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 772 SG REMARK 620 2 CYS A 775 SG 125.5 REMARK 620 3 HIS A 788 NE2 105.6 99.7 REMARK 620 4 HIS A 792 NE2 108.8 112.0 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 802 SG REMARK 620 2 CYS A 805 SG 116.0 REMARK 620 3 HIS A 818 NE2 112.4 101.4 REMARK 620 4 HIS A 823 NE2 102.2 118.5 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1120 O REMARK 620 2 HOH A1125 O 117.3 REMARK 620 3 DG C 5 OP2 93.2 131.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 1201 DBREF 6U9Q A 730 835 UNP Q9H165 BC11A_HUMAN 730 835 DBREF 6U9Q B 1 13 PDB 6U9Q 6U9Q 1 13 DBREF 6U9Q C 1 13 PDB 6U9Q 6U9Q 1 13 SEQADV 6U9Q GLY A 726 UNP Q9H165 EXPRESSION TAG SEQADV 6U9Q PRO A 727 UNP Q9H165 EXPRESSION TAG SEQADV 6U9Q HIS A 728 UNP Q9H165 EXPRESSION TAG SEQADV 6U9Q MET A 729 UNP Q9H165 EXPRESSION TAG SEQRES 1 A 110 GLY PRO HIS MET PRO GLY ARG PRO SER SER LYS GLU GLY SEQRES 2 A 110 ARG ARG SER ASP THR CYS GLU TYR CYS GLY LYS VAL PHE SEQRES 3 A 110 LYS ASN CYS SER ASN LEU THR VAL HIS ARG ARG SER HIS SEQRES 4 A 110 THR GLY GLU ARG PRO TYR LYS CYS GLU LEU CYS ASN TYR SEQRES 5 A 110 ALA CYS ALA GLN SER SER LYS LEU THR ARG HIS MET LYS SEQRES 6 A 110 THR HIS GLY GLN VAL GLY LYS ASP VAL TYR LYS CYS GLU SEQRES 7 A 110 ILE CYS LYS MET PRO PHE SER VAL TYR SER THR LEU GLU SEQRES 8 A 110 LYS HIS MET LYS LYS TRP HIS SER ASP ARG VAL LEU ASN SEQRES 9 A 110 ASN ASP ILE LYS THR GLU SEQRES 1 B 13 DC DA DT DT DG DG DT DC DA DA DG DC DG SEQRES 1 C 13 DG DC DT DT DG DA DC DC DA DA DT DG DC HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HET PO4 A1004 5 HET PO4 A1005 5 HET MG C1201 1 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 PO4 2(O4 P 3-) FORMUL 9 MG MG 2+ FORMUL 10 HOH *109(H2 O) HELIX 1 AA1 GLY A 738 THR A 743 5 6 HELIX 2 AA2 ASN A 753 GLY A 766 1 14 HELIX 3 AA3 GLN A 781 LYS A 790 1 10 HELIX 4 AA4 THR A 791 GLY A 793 5 3 HELIX 5 AA5 VAL A 811 HIS A 823 1 13 SHEET 1 AA1 2 TYR A 770 LYS A 771 0 SHEET 2 AA1 2 ALA A 778 CYS A 779 -1 O CYS A 779 N TYR A 770 SHEET 1 AA2 2 TYR A 800 LYS A 801 0 SHEET 2 AA2 2 PRO A 808 PHE A 809 -1 O PHE A 809 N TYR A 800 LINK SG CYS A 744 ZN ZN A1001 1555 1555 2.25 LINK SG CYS A 747 ZN ZN A1001 1555 1555 2.31 LINK NE2 HIS A 760 ZN ZN A1001 1555 1555 2.08 LINK NE2 HIS A 764 ZN ZN A1001 1555 1555 2.05 LINK SG CYS A 772 ZN ZN A1002 1555 1555 2.31 LINK SG CYS A 775 ZN ZN A1002 1555 1555 2.29 LINK NE2 HIS A 788 ZN ZN A1002 1555 1555 2.06 LINK NE2 HIS A 792 ZN ZN A1002 1555 1555 2.03 LINK SG CYS A 802 ZN ZN A1003 1555 1555 2.29 LINK SG CYS A 805 ZN ZN A1003 1555 1555 2.32 LINK NE2 HIS A 818 ZN ZN A1003 1555 1555 2.04 LINK NE2 HIS A 823 ZN ZN A1003 1555 1555 2.07 LINK O HOH A1120 MG MG C1201 1555 1555 2.61 LINK O HOH A1125 MG MG C1201 1555 1555 2.69 LINK OP2 DG C 5 MG MG C1201 1555 1555 1.86 SITE 1 AC1 4 CYS A 744 CYS A 747 HIS A 760 HIS A 764 SITE 1 AC2 4 CYS A 772 CYS A 775 HIS A 788 HIS A 792 SITE 1 AC3 4 CYS A 802 CYS A 805 HIS A 818 HIS A 823 SITE 1 AC4 6 PHE A 751 LYS A 752 ASN A 753 ASN A 756 SITE 2 AC4 6 HOH A1102 HOH A1109 SITE 1 AC5 5 ARG A 740 ASN A 776 LYS A 821 TRP A 822 SITE 2 AC5 5 HOH A1148 SITE 1 AC6 5 SER A 783 HOH A1120 HOH A1125 DT C 4 SITE 2 AC6 5 DG C 5 CRYST1 101.000 60.160 75.790 90.00 129.73 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009901 0.000000 0.008229 0.00000 SCALE2 0.000000 0.016622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017156 0.00000