HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-SEP-19 6U9R TITLE MLL1 SET N3861I/Q3867L BOUND TO INHIBITOR 12 (TC-5140) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.43; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.M.PETRUNAK,J.A.STUCKEY REVDAT 2 11-OCT-23 6U9R 1 REMARK REVDAT 1 01-JUL-20 6U9R 0 JRNL AUTH T.R.CHERN,L.LIU,E.PETRUNAK,J.A.STUCKEY,M.WANG,D.BERNARD, JRNL AUTH 2 H.ZHOU,S.LEE,Y.DOU,S.WANG JRNL TITL DISCOVERY OF POTENT SMALL-MOLECULE INHIBITORS OF MLL JRNL TITL 2 METHYLTRANSFERASE. JRNL REF ACS MED.CHEM.LETT. V. 11 1348 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 32551023 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00229 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 998 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 49 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 420 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2289 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 408 REMARK 3 BIN R VALUE (WORKING SET) : 0.2262 REMARK 3 BIN FREE R VALUE : 0.3296 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.86 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 12 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01450 REMARK 3 B22 (A**2) : 0.01450 REMARK 3 B33 (A**2) : -0.02900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.214 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.183 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.219 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.185 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2462 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3386 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 832 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 460 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2462 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 320 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 8 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 12 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2880 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|3813 - 3823} REMARK 3 ORIGIN FOR THE GROUP (A): 18.5051 5.5166 -4.2609 REMARK 3 T TENSOR REMARK 3 T11: 0.1521 T22: -0.0031 REMARK 3 T33: -0.0355 T12: 0.1770 REMARK 3 T13: -0.0008 T23: -0.0914 REMARK 3 L TENSOR REMARK 3 L11: -0.9203 L22: 3.0011 REMARK 3 L33: 0.0000 L12: -0.0694 REMARK 3 L13: -0.9248 L23: -1.5290 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.0987 S13: -0.0185 REMARK 3 S21: 0.0523 S22: -0.0412 S23: -0.0954 REMARK 3 S31: -0.1884 S32: 0.1497 S33: 0.0386 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|3824 - 3855} REMARK 3 ORIGIN FOR THE GROUP (A): 3.4169 14.9463 0.3049 REMARK 3 T TENSOR REMARK 3 T11: 0.1385 T22: -0.1310 REMARK 3 T33: -0.0357 T12: 0.1722 REMARK 3 T13: 0.0245 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.3704 L22: 10.3435 REMARK 3 L33: 7.5596 L12: -2.1794 REMARK 3 L13: -0.2062 L23: -2.2116 REMARK 3 S TENSOR REMARK 3 S11: 0.4770 S12: 0.1642 S13: 0.4444 REMARK 3 S21: -0.8933 S22: -0.4154 S23: -0.4311 REMARK 3 S31: 0.4149 S32: 0.3078 S33: -0.0617 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|3856 - 3916} REMARK 3 ORIGIN FOR THE GROUP (A): 1.5561 -0.0842 9.6142 REMARK 3 T TENSOR REMARK 3 T11: -0.0932 T22: -0.1583 REMARK 3 T33: -0.0752 T12: 0.0982 REMARK 3 T13: -0.0185 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 4.0839 L22: 5.5541 REMARK 3 L33: 0.6795 L12: 0.4875 REMARK 3 L13: -1.3510 L23: -1.7072 REMARK 3 S TENSOR REMARK 3 S11: 0.0912 S12: -0.3106 S13: -0.5196 REMARK 3 S21: -0.7376 S22: -0.3237 S23: 0.3061 REMARK 3 S31: 0.2536 S32: 0.0610 S33: 0.2325 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|3917 - 3946} REMARK 3 ORIGIN FOR THE GROUP (A): 5.0068 5.5551 -2.6762 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: -0.2671 REMARK 3 T33: -0.1472 T12: 0.2476 REMARK 3 T13: -0.0466 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 2.2206 L22: 7.2541 REMARK 3 L33: 7.2207 L12: -4.0172 REMARK 3 L13: -2.7504 L23: -1.4249 REMARK 3 S TENSOR REMARK 3 S11: 0.3274 S12: 0.2312 S13: 0.0542 REMARK 3 S21: -0.9908 S22: -0.3575 S23: -0.1917 REMARK 3 S31: 0.6977 S32: 0.2294 S33: 0.0301 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|3954 - 3968} REMARK 3 ORIGIN FOR THE GROUP (A): -13.9629 3.2218 -3.8864 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: -0.0073 REMARK 3 T33: -0.1046 T12: 0.0197 REMARK 3 T13: -0.1198 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 4.9535 L22: -0.1969 REMARK 3 L33: 0.0867 L12: 1.1418 REMARK 3 L13: 3.9712 L23: 5.0340 REMARK 3 S TENSOR REMARK 3 S11: -0.1285 S12: 0.0160 S13: 0.0622 REMARK 3 S21: 0.0492 S22: 0.1464 S23: -0.0310 REMARK 3 S31: 0.1461 S32: -0.0526 S33: -0.0179 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {B|3814 - 3828} REMARK 3 ORIGIN FOR THE GROUP (A): -15.7595 20.8887 -10.4292 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: -0.1212 REMARK 3 T33: 0.0983 T12: 0.1101 REMARK 3 T13: 0.0736 T23: 0.0862 REMARK 3 L TENSOR REMARK 3 L11: 1.6954 L22: -0.5904 REMARK 3 L33: 0.0000 L12: -0.7824 REMARK 3 L13: -0.9421 L23: -0.9121 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: -0.1468 S13: -0.0168 REMARK 3 S21: 0.0010 S22: 0.0630 S23: 0.0229 REMARK 3 S31: 0.1980 S32: -0.2751 S33: -0.1059 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {B|3829 - 3847} REMARK 3 ORIGIN FOR THE GROUP (A): -13.1899 40.6050 -14.8590 REMARK 3 T TENSOR REMARK 3 T11: -0.0252 T22: -0.1132 REMARK 3 T33: -0.0858 T12: 0.1267 REMARK 3 T13: -0.0222 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 8.6241 L22: 6.3360 REMARK 3 L33: 6.3200 L12: -4.6162 REMARK 3 L13: -4.1259 L23: 1.2021 REMARK 3 S TENSOR REMARK 3 S11: -0.2107 S12: -0.2561 S13: 0.3327 REMARK 3 S21: 0.3702 S22: 0.4107 S23: 0.0141 REMARK 3 S31: -0.1212 S32: 0.2129 S33: -0.2001 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {B|3848 - 3913} REMARK 3 ORIGIN FOR THE GROUP (A): -2.2239 30.3664 -20.1692 REMARK 3 T TENSOR REMARK 3 T11: -0.0381 T22: -0.1648 REMARK 3 T33: -0.0766 T12: 0.0880 REMARK 3 T13: -0.0352 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 5.5126 L22: 4.4968 REMARK 3 L33: 0.9682 L12: -0.4964 REMARK 3 L13: -2.5151 L23: -0.4150 REMARK 3 S TENSOR REMARK 3 S11: -0.6698 S12: -0.2892 S13: -0.0787 REMARK 3 S21: 0.2068 S22: 0.4604 S23: -0.4528 REMARK 3 S31: 0.1473 S32: 0.2350 S33: 0.2094 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {B|3914 - 3946} REMARK 3 ORIGIN FOR THE GROUP (A): -6.9707 29.0799 -9.1562 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: -0.0865 REMARK 3 T33: -0.1767 T12: 0.3613 REMARK 3 T13: -0.0142 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.9835 L22: 7.0799 REMARK 3 L33: 4.5553 L12: -4.6276 REMARK 3 L13: -1.9589 L23: -1.7249 REMARK 3 S TENSOR REMARK 3 S11: -0.5486 S12: -0.4936 S13: -0.1608 REMARK 3 S21: 0.6516 S22: 0.5732 S23: 0.1698 REMARK 3 S31: 0.6506 S32: 0.2863 S33: -0.0246 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {B|3954 - 3968} REMARK 3 ORIGIN FOR THE GROUP (A): 4.1610 45.2316 -7.9531 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.0684 REMARK 3 T33: -0.1190 T12: 0.0406 REMARK 3 T13: -0.1040 T23: -0.0767 REMARK 3 L TENSOR REMARK 3 L11: 4.9634 L22: 1.5633 REMARK 3 L33: 0.0000 L12: 2.7866 REMARK 3 L13: 6.3196 L23: 0.8967 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: -0.1316 S13: -0.0929 REMARK 3 S21: -0.1787 S22: 0.0573 S23: -0.0117 REMARK 3 S31: 0.0552 S32: 0.1387 S33: -0.1717 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U9R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55900 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5F5E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M SODIUM MALONATE PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.17667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3812 REMARK 465 PRO A 3947 REMARK 465 ILE A 3948 REMARK 465 GLU A 3949 REMARK 465 ASP A 3950 REMARK 465 ALA A 3951 REMARK 465 SER A 3952 REMARK 465 ASN A 3953 REMARK 465 ASN A 3969 REMARK 465 SER B 3812 REMARK 465 ASP B 3813 REMARK 465 PRO B 3947 REMARK 465 ILE B 3948 REMARK 465 GLU B 3949 REMARK 465 ASP B 3950 REMARK 465 ALA B 3951 REMARK 465 SER B 3952 REMARK 465 ASN B 3953 REMARK 465 ASN B 3969 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A3818 CG SD CE REMARK 470 ARG A3821 CG CD NE CZ NH1 NH2 REMARK 470 HIS A3822 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A3824 CG CD CE NZ REMARK 470 LYS A3825 CG CD CE NZ REMARK 470 LYS A3828 CG CD CE NZ REMARK 470 GLU A3829 CG CD OE1 OE2 REMARK 470 ARG A3835 CD NE CZ NH1 NH2 REMARK 470 LYS A3878 CE NZ REMARK 470 ASP A3889 CG OD1 OD2 REMARK 470 GLU A3910 CG CD OE1 OE2 REMARK 470 ILE A3920 CG1 CG2 CD1 REMARK 470 ASP A3921 CG OD1 OD2 REMARK 470 GLN A3923 CG CD OE1 NE2 REMARK 470 LYS A3945 CG CD CE NZ REMARK 470 LYS A3954 CG CD CE NZ REMARK 470 LEU A3955 CG CD1 CD2 REMARK 470 LYS A3962 CD CE NZ REMARK 470 LYS A3963 CG CD CE NZ REMARK 470 ARG A3965 CG CD NE CZ NH1 NH2 REMARK 470 LEU A3968 CG CD1 CD2 REMARK 470 MET B3818 CG SD CE REMARK 470 ARG B3821 CG CD NE CZ NH1 NH2 REMARK 470 HIS B3822 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B3824 CG CD CE NZ REMARK 470 LYS B3825 CG CD CE NZ REMARK 470 LYS B3828 CG CD CE NZ REMARK 470 GLU B3829 CG CD OE1 OE2 REMARK 470 LYS B3878 CG CD CE NZ REMARK 470 ASP B3889 CG OD1 OD2 REMARK 470 LYS B3945 CG CD CE NZ REMARK 470 LYS B3954 CG CD CE NZ REMARK 470 LEU B3955 CG CD1 CD2 REMARK 470 LYS B3962 CD CE NZ REMARK 470 LYS B3963 CG CD CE NZ REMARK 470 ARG B3965 CD NE CZ NH1 NH2 REMARK 470 LEU B3968 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A3823 -60.15 -146.75 REMARK 500 LYS A3963 43.58 -87.29 REMARK 500 LYS A3966 -5.72 68.86 REMARK 500 HIS B3822 39.43 36.17 REMARK 500 LYS B3963 41.05 -90.66 REMARK 500 LYS B3966 -2.11 64.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B4173 DISTANCE = 6.59 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A3909 SG REMARK 620 2 CYS A3957 SG 109.6 REMARK 620 3 CYS A3959 SG 117.7 111.2 REMARK 620 4 CYS A3964 SG 109.0 102.1 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B3909 SG REMARK 620 2 CYS B3957 SG 112.2 REMARK 620 3 CYS B3959 SG 114.2 109.8 REMARK 620 4 CYS B3964 SG 109.9 103.2 106.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q2P A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q2P B 4002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U9K RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO INHIBITOR 18 (TC-5153) REMARK 900 RELATED ID: 6U9M RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO INHIBITORINHIBITOR 16 (TC-5109) REMARK 900 RELATED ID: 6U9N RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO INHIBITOR INHIBITOR 14 (TC-5139) DBREF 6U9R A 3813 3969 UNP B4DIJ7 B4DIJ7_HUMAN 167 323 DBREF 6U9R B 3813 3969 UNP B4DIJ7 B4DIJ7_HUMAN 167 323 SEQADV 6U9R SER A 3812 UNP B4DIJ7 EXPRESSION TAG SEQADV 6U9R ILE A 3861 UNP B4DIJ7 ASN 215 ENGINEERED MUTATION SEQADV 6U9R LEU A 3867 UNP B4DIJ7 GLN 221 ENGINEERED MUTATION SEQADV 6U9R SER B 3812 UNP B4DIJ7 EXPRESSION TAG SEQADV 6U9R ILE B 3861 UNP B4DIJ7 ASN 215 ENGINEERED MUTATION SEQADV 6U9R LEU B 3867 UNP B4DIJ7 GLN 221 ENGINEERED MUTATION SEQRES 1 A 158 SER ASP LEU PRO MET PRO MET ARG PHE ARG HIS LEU LYS SEQRES 2 A 158 LYS THR SER LYS GLU ALA VAL GLY VAL TYR ARG SER PRO SEQRES 3 A 158 ILE HIS GLY ARG GLY LEU PHE CYS LYS ARG ASN ILE ASP SEQRES 4 A 158 ALA GLY GLU MET VAL ILE GLU TYR ALA GLY ILE VAL ILE SEQRES 5 A 158 ARG SER ILE LEU THR ASP LYS ARG GLU LYS TYR TYR ASP SEQRES 6 A 158 SER LYS GLY ILE GLY CYS TYR MET PHE ARG ILE ASP ASP SEQRES 7 A 158 SER GLU VAL VAL ASP ALA THR MET HIS GLY ASN ALA ALA SEQRES 8 A 158 ARG PHE ILE ASN HIS SER CYS GLU PRO ASN CYS TYR SER SEQRES 9 A 158 ARG VAL ILE ASN ILE ASP GLY GLN LYS HIS ILE VAL ILE SEQRES 10 A 158 PHE ALA MET ARG LYS ILE TYR ARG GLY GLU GLU LEU THR SEQRES 11 A 158 TYR ASP TYR LYS PHE PRO ILE GLU ASP ALA SER ASN LYS SEQRES 12 A 158 LEU PRO CYS ASN CYS GLY ALA LYS LYS CYS ARG LYS PHE SEQRES 13 A 158 LEU ASN SEQRES 1 B 158 SER ASP LEU PRO MET PRO MET ARG PHE ARG HIS LEU LYS SEQRES 2 B 158 LYS THR SER LYS GLU ALA VAL GLY VAL TYR ARG SER PRO SEQRES 3 B 158 ILE HIS GLY ARG GLY LEU PHE CYS LYS ARG ASN ILE ASP SEQRES 4 B 158 ALA GLY GLU MET VAL ILE GLU TYR ALA GLY ILE VAL ILE SEQRES 5 B 158 ARG SER ILE LEU THR ASP LYS ARG GLU LYS TYR TYR ASP SEQRES 6 B 158 SER LYS GLY ILE GLY CYS TYR MET PHE ARG ILE ASP ASP SEQRES 7 B 158 SER GLU VAL VAL ASP ALA THR MET HIS GLY ASN ALA ALA SEQRES 8 B 158 ARG PHE ILE ASN HIS SER CYS GLU PRO ASN CYS TYR SER SEQRES 9 B 158 ARG VAL ILE ASN ILE ASP GLY GLN LYS HIS ILE VAL ILE SEQRES 10 B 158 PHE ALA MET ARG LYS ILE TYR ARG GLY GLU GLU LEU THR SEQRES 11 B 158 TYR ASP TYR LYS PHE PRO ILE GLU ASP ALA SER ASN LYS SEQRES 12 B 158 LEU PRO CYS ASN CYS GLY ALA LYS LYS CYS ARG LYS PHE SEQRES 13 B 158 LEU ASN HET ZN A4001 1 HET Q2P A4002 72 HET ZN B4001 1 HET Q2P B4002 72 HETNAM ZN ZINC ION HETNAM Q2P 5'-{[(3S)-3-AMINO-3-CARBOXYPROPYL]({1-[(3- HETNAM 2 Q2P CHLOROPHENYL)METHYL]AZETIDIN-3-YL}METHYL)AMINO}-5'- HETNAM 3 Q2P DEOXYADENOSINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 Q2P 2(C25 H33 CL N8 O5) FORMUL 7 HOH *146(H2 O) HELIX 1 AA1 PRO A 3815 ARG A 3821 1 7 HELIX 2 AA2 LEU A 3823 ALA A 3830 1 8 HELIX 3 AA3 LEU A 3867 LYS A 3878 1 12 HELIX 4 AA4 ASN A 3900 ILE A 3905 5 6 HELIX 5 AA5 PRO B 3815 PHE B 3820 1 6 HELIX 6 AA6 HIS B 3822 ALA B 3830 1 9 HELIX 7 AA7 LEU B 3867 LYS B 3878 1 12 HELIX 8 AA8 ASN B 3900 ILE B 3905 5 6 SHEET 1 AA1 2 VAL A3831 ARG A3835 0 SHEET 2 AA1 2 ARG A3841 CYS A3845 -1 O PHE A3844 N GLY A3832 SHEET 1 AA2 3 MET A3854 TYR A3858 0 SHEET 2 AA2 3 GLN A3923 ALA A3930 -1 O ILE A3926 N TYR A3858 SHEET 3 AA2 3 CYS A3913 ILE A3920 -1 N ILE A3918 O HIS A3925 SHEET 1 AA3 3 ILE A3861 ARG A3864 0 SHEET 2 AA3 3 GLU A3891 ASP A3894 -1 O VAL A3892 N ILE A3863 SHEET 3 AA3 3 MET A3884 ARG A3886 -1 N PHE A3885 O VAL A3893 SHEET 1 AA4 2 ASN A3906 HIS A3907 0 SHEET 2 AA4 2 THR A3941 TYR A3942 1 O TYR A3942 N ASN A3906 SHEET 1 AA5 2 VAL B3831 ARG B3835 0 SHEET 2 AA5 2 ARG B3841 CYS B3845 -1 O PHE B3844 N GLY B3832 SHEET 1 AA6 3 MET B3854 TYR B3858 0 SHEET 2 AA6 3 GLN B3923 ALA B3930 -1 O ILE B3926 N TYR B3858 SHEET 3 AA6 3 CYS B3913 ILE B3920 -1 N ILE B3918 O HIS B3925 SHEET 1 AA7 3 ILE B3861 ARG B3864 0 SHEET 2 AA7 3 GLU B3891 ASP B3894 -1 O VAL B3892 N ILE B3863 SHEET 3 AA7 3 MET B3884 ARG B3886 -1 N PHE B3885 O VAL B3893 SHEET 1 AA8 2 ASN B3906 HIS B3907 0 SHEET 2 AA8 2 THR B3941 TYR B3942 1 O TYR B3942 N ASN B3906 LINK SG CYS A3909 ZN ZN A4001 1555 1555 2.27 LINK SG CYS A3957 ZN ZN A4001 1555 1555 2.29 LINK SG CYS A3959 ZN ZN A4001 1555 1555 2.26 LINK SG CYS A3964 ZN ZN A4001 1555 1555 2.50 LINK SG CYS B3909 ZN ZN B4001 1555 1555 2.31 LINK SG CYS B3957 ZN ZN B4001 1555 1555 2.30 LINK SG CYS B3959 ZN ZN B4001 1555 1555 2.27 LINK SG CYS B3964 ZN ZN B4001 1555 1555 2.45 SITE 1 AC1 4 CYS A3909 CYS A3957 CYS A3959 CYS A3964 SITE 1 AC2 14 ILE A3838 HIS A3839 GLY A3840 ARG A3841 SITE 2 AC2 14 CYS A3882 TYR A3883 PHE A3904 ASN A3906 SITE 3 AC2 14 HIS A3907 TYR A3944 PRO A3956 CYS A3957 SITE 4 AC2 14 ASN A3958 HOH A4103 SITE 1 AC3 4 CYS B3909 CYS B3957 CYS B3959 CYS B3964 SITE 1 AC4 13 ILE B3838 HIS B3839 ARG B3841 CYS B3882 SITE 2 AC4 13 TYR B3883 PHE B3904 ASN B3906 HIS B3907 SITE 3 AC4 13 TYR B3944 PRO B3956 CYS B3957 ASN B3958 SITE 4 AC4 13 HOH B4103 CRYST1 54.692 54.692 105.530 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018284 0.010556 0.000000 0.00000 SCALE2 0.000000 0.021113 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009476 0.00000