HEADER IMMUNE SYSTEM 09-SEP-19 6U9U TITLE STRUCTURE OF GM9_TH8SEQ732127 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: GM9_TH8SEQ732127 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GM9_TH8SEQ732127 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FRAGMENT BINDING ANTIGEN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.SINGH,T.J.LIBAN,M.PANCERA REVDAT 4 25-DEC-19 6U9U 1 JRNL REVDAT 3 18-DEC-19 6U9U 1 REMARK REVDAT 2 20-NOV-19 6U9U 1 JRNL REVDAT 1 06-NOV-19 6U9U 0 JRNL AUTH G.E.PHAD,P.PUSHPARAJ,K.TRAN,V.DUBROVSKAYA,M.ADORI, JRNL AUTH 2 P.MARTINEZ-MURILLO,N.VAZQUEZ BERNAT,S.SINGH,G.DIONNE, JRNL AUTH 3 S.O'DELL,K.BHULLAR,S.NARANG,C.SORINI,E.J.VILLABLANCA, JRNL AUTH 4 C.SUNDLING,B.MURRELL,J.R.MASCOLA,L.SHAPIRO,M.PANCERA, JRNL AUTH 5 M.MARTIN,M.CORCORAN,R.T.WYATT,G.B.KARLSSON HEDESTAM JRNL TITL EXTENSIVE DISSEMINATION AND INTRACLONAL MATURATION OF HIV JRNL TITL 2 ENV VACCINE-INDUCED B CELL RESPONSES. JRNL REF J.EXP.MED. V. 217 2020 JRNL REFN ESSN 1540-9538 JRNL PMID 31704807 JRNL DOI 10.1084/JEM.20191155 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.7800 - 4.9845 1.00 3064 153 0.1882 0.2303 REMARK 3 2 4.9845 - 3.9736 1.00 2942 133 0.1490 0.1737 REMARK 3 3 3.9736 - 3.4764 1.00 2892 158 0.1955 0.2596 REMARK 3 4 3.4764 - 3.1609 1.00 2858 151 0.2228 0.2420 REMARK 3 5 3.1609 - 2.9356 1.00 2884 144 0.2566 0.3139 REMARK 3 6 2.9356 - 2.7633 1.00 2821 143 0.2562 0.3069 REMARK 3 7 2.7633 - 2.6255 1.00 2843 154 0.2584 0.2835 REMARK 3 8 2.6255 - 2.5116 1.00 2846 134 0.2730 0.3217 REMARK 3 9 2.5116 - 2.4152 1.00 2848 137 0.2618 0.2953 REMARK 3 10 2.4152 - 2.3321 1.00 2819 133 0.2710 0.2640 REMARK 3 11 2.3321 - 2.2600 0.99 2794 142 0.2809 0.3227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -47.2537 -11.3864 -4.0669 REMARK 3 T TENSOR REMARK 3 T11: 0.3538 T22: 0.4254 REMARK 3 T33: 0.3142 T12: 0.2013 REMARK 3 T13: 0.0424 T23: 0.1771 REMARK 3 L TENSOR REMARK 3 L11: 0.3254 L22: 0.2662 REMARK 3 L33: 0.3344 L12: -0.1654 REMARK 3 L13: -0.0121 L23: 0.3028 REMARK 3 S TENSOR REMARK 3 S11: -0.1165 S12: -0.0610 S13: 0.0426 REMARK 3 S21: 0.0744 S22: -0.0457 S23: -0.0244 REMARK 3 S31: 0.2405 S32: 0.5883 S33: -0.0624 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.60000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 73.85450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 73.85450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.80000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 73.85450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 73.85450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.40000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 73.85450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.85450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.80000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 73.85450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.85450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.40000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 434 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 136 REMARK 465 LYS H 137 REMARK 465 SER H 138 REMARK 465 THR H 139 REMARK 465 SER H 140 REMARK 465 GLY H 141 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 GLN H 3 OE1 REMARK 470 LYS H 222 CG CD CE NZ REMARK 470 SER H 223 OG REMARK 470 CYS H 224 SG REMARK 470 LYS L 169 CG CD CE NZ REMARK 470 LYS L 188 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS L 190 O ARG L 211 1.42 REMARK 500 O HOH L 443 O HOH L 453 2.15 REMARK 500 O GLY L 16 O HOH L 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 82 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -19.09 84.41 REMARK 500 ASP H 32 -171.25 64.17 REMARK 500 MET H 65 -118.20 41.80 REMARK 500 ASP H 152 74.51 59.80 REMARK 500 THR H 168 -54.19 -121.69 REMARK 500 LEU L 47 -55.55 -120.56 REMARK 500 ALA L 51 -38.93 81.24 REMARK 500 ASN L 138 76.76 44.13 REMARK 500 LYS L 169 -61.41 -94.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 483 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR H 104 O REMARK 620 2 GLU L 32 OE1 81.5 REMARK 620 3 ASP L 91 O 160.2 81.3 REMARK 620 4 ASP L 91 OD2 104.4 103.6 89.3 REMARK 620 5 HOH L 412 O 91.5 118.2 88.0 137.1 REMARK 620 6 FMT L 305 O1 71.3 62.9 92.0 166.1 56.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 156 OE1 REMARK 620 2 HOH H 418 O 87.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 1 O REMARK 620 2 HOH L 405 O 75.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR L 178 OG1 REMARK 620 2 HOH L 437 O 102.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 306 DBREF 6U9U H 1 224 PDB 6U9U 6U9U 1 224 DBREF 6U9U L 1 214 PDB 6U9U 6U9U 1 214 SEQRES 1 H 224 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 224 ALA SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 224 ALA SER ILE ASN THR ASP TYR TRP ASN TRP ILE ARG GLN SEQRES 4 H 224 THR PRO GLY LYS GLY LEU GLU TRP ILE GLY ARG PHE TYR SEQRES 5 H 224 VAL PRO THR GLU ARG THR GLU TYR ASN PRO SER PHE MET SEQRES 6 H 224 ASN ARG VAL THR ILE SER GLY ASP THR SER LYS ASN HIS SEQRES 7 H 224 PHE SER LEU ARG LEU THR SER ALA THR ALA ALA ASP THR SEQRES 8 H 224 ALA VAL TYR PHE CYS ALA ARG GLY LEU TRP ARG GLY TYR SEQRES 9 H 224 PHE PHE TRP VAL ASP VAL TRP GLY PRO GLY VAL LEU VAL SEQRES 10 H 224 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 224 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 224 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 224 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 224 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 224 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 224 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 224 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 224 LYS SER CYS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP THR VAL THR VAL THR CYS ARG ALA SER SEQRES 3 L 214 GLN GLY ILE ASP LYS GLU LEU SER TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN ALA PRO THR LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 214 THR LEU GLN THR GLY VAL SER SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP TYR THR LEU THR LEU THR GLY LEU SEQRES 7 L 214 GLN PRO GLU ASP VAL ALA THR TYR PHE CYS LEU GLN ASP SEQRES 8 L 214 TYR SER THR PRO TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS HET NA H 301 1 HET NA H 302 1 HET FMT H 303 5 HET EDO H 304 10 HET NA L 301 1 HET NA L 302 1 HET NA L 303 1 HET NA L 304 1 HET FMT L 305 5 HET EDO L 306 10 HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NA 6(NA 1+) FORMUL 5 FMT 2(C H2 O2) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 13 HOH *126(H2 O) HELIX 1 AA1 PRO H 62 MET H 65 5 4 HELIX 2 AA2 THR H 87 THR H 91 5 5 HELIX 3 AA3 SER H 195 LEU H 197 5 3 HELIX 4 AA4 LYS H 209 ASN H 212 5 4 HELIX 5 AA5 GLN L 79 VAL L 83 5 5 HELIX 6 AA6 SER L 121 SER L 127 1 7 HELIX 7 AA7 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 GLN H 3 GLU H 6 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 HIS H 78 LEU H 83 -1 O LEU H 83 N LEU H 18 SHEET 4 AA1 4 VAL H 68 ASP H 73 -1 N SER H 71 O SER H 80 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 VAL H 115 VAL H 119 1 O THR H 118 N VAL H 12 SHEET 3 AA2 6 ALA H 92 ARG H 102 -1 N TYR H 94 O VAL H 115 SHEET 4 AA2 6 TYR H 33 THR H 40 -1 N ILE H 37 O PHE H 95 SHEET 5 AA2 6 GLY H 44 TYR H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 ARG H 57 TYR H 60 -1 O GLU H 59 N ARG H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 VAL H 115 VAL H 119 1 O THR H 118 N VAL H 12 SHEET 3 AA3 4 ALA H 92 ARG H 102 -1 N TYR H 94 O VAL H 115 SHEET 4 AA3 4 PHE H 105 TRP H 111 -1 O VAL H 110 N ARG H 98 SHEET 1 AA4 4 SER H 128 LEU H 132 0 SHEET 2 AA4 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 AA4 4 TYR H 184 PRO H 193 -1 O VAL H 192 N ALA H 144 SHEET 4 AA4 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 AA5 4 SER H 128 LEU H 132 0 SHEET 2 AA5 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 AA5 4 TYR H 184 PRO H 193 -1 O VAL H 192 N ALA H 144 SHEET 4 AA5 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 AA6 3 THR H 159 TRP H 162 0 SHEET 2 AA6 3 ILE H 203 HIS H 208 -1 O ASN H 207 N THR H 159 SHEET 3 AA6 3 THR H 213 ARG H 218 -1 O THR H 213 N HIS H 208 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 LEU L 75 -1 O LEU L 73 N VAL L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N SER L 34 O LEU L 89 SHEET 5 AA8 6 THR L 45 TYR L 49 -1 O THR L 45 N GLN L 37 SHEET 6 AA8 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 ALA L 153 GLN L 155 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 148 CYS H 204 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 LINK O TYR H 104 NA NA L 301 1555 1555 2.35 LINK OE1 GLU H 156 NA NA H 301 1555 1555 2.97 LINK O ASP L 1 NA NA L 303 1555 1555 2.84 LINK OE1 GLU L 32 NA NA L 301 1555 1555 2.42 LINK O ASP L 91 NA NA L 301 1555 1555 2.45 LINK OD2 ASP L 91 NA NA L 301 1555 1555 2.29 LINK OG1 THR L 178 NA NA H 302 1555 1555 2.91 LINK NA NA H 301 O HOH H 418 1555 1555 2.32 LINK NA NA H 302 O HOH L 437 1555 1555 2.96 LINK NA NA L 301 O HOH L 412 1555 1555 2.46 LINK NA NA L 301 O1 FMT L 305 1555 1555 2.81 LINK NA NA L 303 O HOH L 405 1555 1555 2.44 CISPEP 1 PHE H 154 PRO H 155 0 -6.78 CISPEP 2 GLU H 156 PRO H 157 0 0.43 CISPEP 3 SER L 7 PRO L 8 0 -4.82 CISPEP 4 THR L 94 PRO L 95 0 -3.09 CISPEP 5 TYR L 140 PRO L 141 0 4.73 SITE 1 AC1 2 GLU H 156 HOH H 418 SITE 1 AC2 4 SER H 185 SER H 187 THR L 178 HOH L 437 SITE 1 AC3 6 TYR H 153 GLU H 156 PRO H 157 VAL H 158 SITE 2 AC3 6 ALA H 176 LEU H 186 SITE 1 AC4 6 LYS H 43 GLY H 44 LEU H 45 PHE L 98 SITE 2 AC4 6 GLY L 99 GLN L 100 SITE 1 AC5 5 TYR H 104 GLU L 32 ASP L 91 FMT L 305 SITE 2 AC5 5 HOH L 412 SITE 1 AC6 1 SER L 10 SITE 1 AC7 3 ASP L 1 GLN L 3 HOH L 405 SITE 1 AC8 1 ASP L 122 SITE 1 AC9 9 THR H 40 PRO H 41 GLY H 42 TYR H 104 SITE 2 AC9 9 GLU L 32 TYR L 92 NA L 301 HOH L 412 SITE 3 AC9 9 HOH L 449 SITE 1 AD1 6 ARG L 142 GLU L 143 ALA L 144 GLU L 161 SITE 2 AD1 6 LEU L 175 HOH L 419 CRYST1 147.709 147.709 63.200 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006770 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015823 0.00000