HEADER HYDROLASE 10-SEP-19 6UA1 TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA IN THE NO-METAL BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METALLO-BETA-LACTAMASE L1 (BETA-LACTAMASE TYPE II) COMPND 3 (EC 3.5.2.6) (PENICILLINASE); COMPND 4 CHAIN: A; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA (STRAIN K279A); SOURCE 3 ORGANISM_TAXID: 522373; SOURCE 4 STRAIN: K279A; SOURCE 5 GENE: SMLT2667; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS LACTAM ANTIBIOTICS, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6UA1 1 REMARK REVDAT 2 18-DEC-19 6UA1 1 REMARK REVDAT 1 18-SEP-19 6UA1 0 JRNL AUTH Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM JRNL TITL 2 STENOTROPHOMONAS MALTOPHILIA IN THE NO-METAL BOUND FORM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 29445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1500 - 4.0000 0.99 2770 157 0.1470 0.1606 REMARK 3 2 4.0000 - 3.1800 0.99 2634 147 0.1746 0.2208 REMARK 3 3 3.1800 - 2.7800 1.00 2610 142 0.2174 0.2350 REMARK 3 4 2.7800 - 2.5200 1.00 2595 130 0.2155 0.2663 REMARK 3 5 2.5200 - 2.3400 1.00 2582 142 0.1989 0.2601 REMARK 3 6 2.3400 - 2.2000 1.00 2554 139 0.2067 0.2522 REMARK 3 7 2.2000 - 2.0900 1.00 2551 137 0.2246 0.2666 REMARK 3 8 2.0900 - 2.0000 1.00 2546 138 0.2456 0.2844 REMARK 3 9 2.0000 - 1.9200 1.00 2545 131 0.2900 0.3137 REMARK 3 10 1.9200 - 1.8600 0.98 2481 141 0.3418 0.4317 REMARK 3 11 1.8600 - 1.8000 0.82 2066 107 0.3959 0.3946 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.275 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.786 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2092 REMARK 3 ANGLE : 0.775 2859 REMARK 3 CHIRALITY : 0.051 317 REMARK 3 PLANARITY : 0.006 380 REMARK 3 DIHEDRAL : 13.771 1243 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1949 -5.5930 1.8356 REMARK 3 T TENSOR REMARK 3 T11: 0.7149 T22: 0.4762 REMARK 3 T33: 0.6201 T12: 0.0071 REMARK 3 T13: 0.0604 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.0835 L22: 0.0203 REMARK 3 L33: -0.0060 L12: 0.0411 REMARK 3 L13: 0.0104 L23: 0.0260 REMARK 3 S TENSOR REMARK 3 S11: -0.3348 S12: -0.4831 S13: -0.2294 REMARK 3 S21: -0.0067 S22: 0.1893 S23: 0.2059 REMARK 3 S31: 0.0634 S32: -0.3534 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5555 21.2690 9.6194 REMARK 3 T TENSOR REMARK 3 T11: 0.4936 T22: 0.2947 REMARK 3 T33: 0.4029 T12: 0.0382 REMARK 3 T13: -0.0464 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.2857 L22: 0.2817 REMARK 3 L33: 0.3626 L12: -0.3029 REMARK 3 L13: -0.2641 L23: 0.1834 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: 0.0603 S13: 0.0547 REMARK 3 S21: 0.0532 S22: -0.0257 S23: 0.1319 REMARK 3 S31: -0.1654 S32: -0.2305 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9899 15.7311 4.7637 REMARK 3 T TENSOR REMARK 3 T11: 0.4850 T22: 0.3209 REMARK 3 T33: 0.3237 T12: 0.0237 REMARK 3 T13: -0.0250 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.1851 L22: 0.3213 REMARK 3 L33: 0.1789 L12: -0.2877 REMARK 3 L13: -0.1168 L23: 0.0508 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: 0.1223 S13: -0.0486 REMARK 3 S21: -0.1892 S22: -0.0590 S23: -0.0755 REMARK 3 S31: -0.1950 S32: -0.0416 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2040 2.6718 9.6947 REMARK 3 T TENSOR REMARK 3 T11: 0.4370 T22: 0.3129 REMARK 3 T33: 0.3487 T12: 0.0413 REMARK 3 T13: 0.0124 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.3262 L22: 0.4689 REMARK 3 L33: 0.2032 L12: -0.4243 REMARK 3 L13: 0.0908 L23: -0.1502 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: 0.0184 S13: -0.0885 REMARK 3 S21: 0.1518 S22: -0.0755 S23: 0.0973 REMARK 3 S31: 0.0308 S32: -0.0957 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5144 11.7852 21.2444 REMARK 3 T TENSOR REMARK 3 T11: 0.4932 T22: 0.2505 REMARK 3 T33: 0.3262 T12: 0.0204 REMARK 3 T13: -0.0168 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.0031 L22: 0.6141 REMARK 3 L33: 0.6376 L12: -0.4790 REMARK 3 L13: 0.1347 L23: -0.6230 REMARK 3 S TENSOR REMARK 3 S11: -0.1861 S12: -0.1244 S13: 0.0611 REMARK 3 S21: 0.4101 S22: 0.0525 S23: -0.0126 REMARK 3 S31: -0.0237 S32: 0.0408 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2646 8.0348 28.1682 REMARK 3 T TENSOR REMARK 3 T11: 0.5629 T22: 0.3543 REMARK 3 T33: 0.3597 T12: 0.0810 REMARK 3 T13: 0.0019 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.3329 L22: 0.0808 REMARK 3 L33: 0.1405 L12: 0.1468 REMARK 3 L13: -0.1162 L23: -0.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: -0.2525 S13: 0.0139 REMARK 3 S21: 0.6845 S22: -0.1538 S23: -0.1229 REMARK 3 S31: -0.1679 S32: 0.0700 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6080 19.8496 22.8760 REMARK 3 T TENSOR REMARK 3 T11: 0.5391 T22: 0.4600 REMARK 3 T33: 0.3838 T12: 0.1352 REMARK 3 T13: 0.0357 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.0706 L22: 0.0267 REMARK 3 L33: 0.0809 L12: 0.0521 REMARK 3 L13: -0.0744 L23: -0.0597 REMARK 3 S TENSOR REMARK 3 S11: -0.1471 S12: 0.0465 S13: 0.0589 REMARK 3 S21: 0.4512 S22: 0.3672 S23: 0.1804 REMARK 3 S31: -0.0429 S32: -0.7435 S33: 0.0017 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0528 0.9751 31.1315 REMARK 3 T TENSOR REMARK 3 T11: 0.5674 T22: 0.5306 REMARK 3 T33: 0.4056 T12: 0.0978 REMARK 3 T13: 0.1647 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.2988 L22: 0.4350 REMARK 3 L33: 0.0806 L12: -0.3624 REMARK 3 L13: 0.1754 L23: -0.1491 REMARK 3 S TENSOR REMARK 3 S11: -0.2236 S12: -0.0478 S13: 0.0144 REMARK 3 S21: 0.2466 S22: 0.4497 S23: 0.4530 REMARK 3 S31: -0.2337 S32: -0.9801 S33: 0.0473 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29676 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 6U0Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE PH 7.0, 20 % W/V REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.01167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.02333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.01167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.02333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.01167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 66.02333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.01167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 66.02333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 104.46700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 104.46700 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 523 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 16 REMARK 465 ASN A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 THR A 289 REMARK 465 ARG A 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 68 51.26 -116.90 REMARK 500 ASP A 74 156.65 68.18 REMARK 500 ALA A 106 49.14 -99.05 REMARK 500 ASP A 192 -167.61 -100.29 REMARK 500 ARG A 194 -78.76 -133.01 REMARK 500 ASP A 195 -119.28 59.58 REMARK 500 ASP A 195 62.99 -104.96 REMARK 500 TYR A 220 73.85 -152.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U0Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN , APP-FORM REMARK 900 RELATED ID: 6U0Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE COMPLEX WITH PENICILLIN REMARK 900 RELATED ID: 6U10 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE COMPLEX WITH CAPTOPRIL REMARK 900 RELATED ID: 6U13 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE COMPLEX WITH MOXALACTAM REMARK 900 RELATED ID: 6U2Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH TWO NI IONS IN THE COMPLEX WITH MOXALACTAM REMARK 900 RELATED ID: 6U2Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH TWO COPPER IONS IN THE COMPLEX WITH MOXALACTAM DBREF 6UA1 A 19 290 UNP B2FTM1 B2FTM1_STRMK 19 290 SEQADV 6UA1 SER A 16 UNP B2FTM1 EXPRESSION TAG SEQADV 6UA1 ASN A 17 UNP B2FTM1 EXPRESSION TAG SEQADV 6UA1 ALA A 18 UNP B2FTM1 EXPRESSION TAG SEQRES 1 A 275 SER ASN ALA ALA SER ALA ALA GLU ALA PRO LEU PRO GLN SEQRES 2 A 275 LEU ARG ALA TYR THR VAL ASP ALA SER TRP LEU GLN PRO SEQRES 3 A 275 MET ALA PRO LEU GLN VAL ALA ASP HIS THR TRP GLN ILE SEQRES 4 A 275 GLY THR GLU ASP LEU THR ALA LEU LEU VAL GLN THR ALA SEQRES 5 A 275 GLU GLY ALA VAL LEU LEU ASP GLY GLY MET PRO GLN MET SEQRES 6 A 275 ALA GLY HIS LEU LEU ASP ASN MET LYS LEU ARG GLY VAL SEQRES 7 A 275 ALA PRO GLN ASP LEU ARG LEU ILE LEU LEU SER HIS ALA SEQRES 8 A 275 HIS ALA ASP HIS ALA GLY PRO VAL ALA GLU LEU LYS ARG SEQRES 9 A 275 ARG THR GLY ALA HIS VAL ALA ALA ASN ALA GLU THR ALA SEQRES 10 A 275 VAL LEU LEU ALA ARG GLY GLY SER ASN ASP LEU HIS PHE SEQRES 11 A 275 GLY ASP GLY ILE THR TYR PRO PRO ALA SER ALA ASP ARG SEQRES 12 A 275 ILE ILE MET ASP GLY GLU VAL VAL THR VAL GLY GLY ILE SEQRES 13 A 275 ALA PHE THR ALA HIS PHE MET PRO GLY HIS THR PRO GLY SEQRES 14 A 275 SER THR ALA TRP THR TRP THR ASP THR ARG ASP GLY LYS SEQRES 15 A 275 PRO VAL ARG ILE ALA TYR ALA ASP SER LEU SER ALA PRO SEQRES 16 A 275 GLY TYR GLN LEU LYS GLY ASN PRO ARG TYR PRO ARG LEU SEQRES 17 A 275 ILE GLU ASP TYR LYS ARG SER PHE ALA THR VAL ARG ALA SEQRES 18 A 275 LEU PRO CYS ASP LEU LEU LEU THR PRO HIS PRO GLY ALA SEQRES 19 A 275 SER ASN TRP ASN TYR ALA VAL GLY SER LYS ALA SER ALA SEQRES 20 A 275 GLU ALA LEU THR CYS ASN ALA TYR ALA ASP ALA ALA GLU SEQRES 21 A 275 LYS LYS PHE ASP ALA GLN LEU ALA ARG GLU THR ALA GLY SEQRES 22 A 275 THR ARG HET EDO A 301 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *126(H2 O) HELIX 1 AA1 ASP A 35 GLN A 40 5 6 HELIX 2 AA2 MET A 77 GLN A 79 5 3 HELIX 3 AA3 MET A 80 ARG A 91 1 12 HELIX 4 AA4 ALA A 94 GLN A 96 5 3 HELIX 5 AA5 HIS A 107 GLY A 112 1 6 HELIX 6 AA6 PRO A 113 GLY A 122 1 10 HELIX 7 AA7 ALA A 129 ARG A 137 1 9 HELIX 8 AA8 ARG A 222 ALA A 236 1 15 HELIX 9 AA9 HIS A 246 ASN A 251 5 6 HELIX 10 AB1 ASN A 253 ALA A 260 5 8 HELIX 11 AB2 THR A 266 ALA A 287 1 22 SHEET 1 AA1 7 LEU A 45 ALA A 48 0 SHEET 2 AA1 7 THR A 51 GLN A 53 -1 O THR A 51 N VAL A 47 SHEET 3 AA1 7 LEU A 62 THR A 66 -1 O LEU A 63 N TRP A 52 SHEET 4 AA1 7 GLY A 69 LEU A 73 -1 O VAL A 71 N VAL A 64 SHEET 5 AA1 7 LEU A 98 LEU A 102 1 O LEU A 102 N LEU A 72 SHEET 6 AA1 7 HIS A 124 ASN A 128 1 O HIS A 124 N ILE A 101 SHEET 7 AA1 7 ARG A 158 ILE A 160 1 O ARG A 158 N ALA A 127 SHEET 1 AA2 5 VAL A 165 VAL A 168 0 SHEET 2 AA2 5 ILE A 171 PHE A 177 -1 O PHE A 173 N VAL A 166 SHEET 3 AA2 5 THR A 186 ARG A 194 -1 O ALA A 187 N HIS A 176 SHEET 4 AA2 5 LYS A 197 TYR A 203 -1 O TYR A 203 N TRP A 188 SHEET 5 AA2 5 LEU A 241 LEU A 243 1 O LEU A 243 N ALA A 202 SITE 1 AC1 4 GLY A 82 ASP A 86 ARG A 120 HOH A 506 CRYST1 104.467 104.467 99.035 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009572 0.005527 0.000000 0.00000 SCALE2 0.000000 0.011053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010097 0.00000