HEADER HYDROLASE 10-SEP-19 6UAH TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA IN THE COMPLEX WITH HYDROLYZED MEROPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METALLO-BETA-LACTAMASE L1 (BETA-LACTAMASE TYPE II) COMPND 3 (EC 3.5.2.6) (PENICILLINASE); COMPND 4 CHAIN: A; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA (STRAIN K279A); SOURCE 3 ORGANISM_TAXID: 522373; SOURCE 4 STRAIN: K279A; SOURCE 5 GENE: SMLT2667; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS LACTAM ANTIBIOTICS, CARBAPENEM, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6UAH 1 COMPND HETNAM REVDAT 2 18-DEC-19 6UAH 1 REMARK REVDAT 1 18-SEP-19 6UAH 0 JRNL AUTH Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM JRNL TITL 2 STENOTROPHOMONAS MALTOPHILIA IN THE COMPLEX WITH HYDROLYZED JRNL TITL 3 MEROPENEM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 22055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8900 - 3.9500 0.98 2845 162 0.1562 0.1753 REMARK 3 2 3.9500 - 3.1400 0.97 2633 148 0.1601 0.1703 REMARK 3 3 3.1400 - 2.7400 0.96 2576 137 0.1855 0.2227 REMARK 3 4 2.7400 - 2.4900 0.96 2556 143 0.1954 0.2616 REMARK 3 5 2.4900 - 2.3100 0.96 2559 128 0.1890 0.2633 REMARK 3 6 2.3100 - 2.1800 0.97 2561 132 0.1907 0.2277 REMARK 3 7 2.1800 - 2.0700 0.98 2610 148 0.1879 0.2472 REMARK 3 8 2.0700 - 1.9800 0.98 2583 134 0.1972 0.2557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2126 REMARK 3 ANGLE : 0.793 2902 REMARK 3 CHIRALITY : 0.049 321 REMARK 3 PLANARITY : 0.005 381 REMARK 3 DIHEDRAL : 12.671 1259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7474 -13.4285 9.5033 REMARK 3 T TENSOR REMARK 3 T11: 0.3661 T22: 0.3086 REMARK 3 T33: 0.4035 T12: -0.0122 REMARK 3 T13: -0.0301 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 0.9537 L22: 5.1555 REMARK 3 L33: 2.9072 L12: -0.5934 REMARK 3 L13: -0.0097 L23: -1.8388 REMARK 3 S TENSOR REMARK 3 S11: -0.1564 S12: 0.0317 S13: 0.2997 REMARK 3 S21: 0.1205 S22: -0.1772 S23: -0.7945 REMARK 3 S31: -0.4021 S32: 0.3491 S33: 0.1738 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.8554 -21.8249 5.8381 REMARK 3 T TENSOR REMARK 3 T11: 0.2776 T22: 0.2012 REMARK 3 T33: 0.2437 T12: 0.0151 REMARK 3 T13: 0.0169 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.5812 L22: 3.3369 REMARK 3 L33: 3.2414 L12: -0.6566 REMARK 3 L13: -0.4776 L23: -0.4513 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: 0.1305 S13: -0.2932 REMARK 3 S21: -0.1644 S22: -0.1124 S23: 0.0920 REMARK 3 S31: 0.3016 S32: 0.1570 S33: 0.1075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6337 -11.7748 13.5094 REMARK 3 T TENSOR REMARK 3 T11: 0.1896 T22: 0.1329 REMARK 3 T33: 0.1635 T12: 0.0078 REMARK 3 T13: -0.0027 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.5105 L22: 0.9541 REMARK 3 L33: 1.3407 L12: -0.4988 REMARK 3 L13: -0.0423 L23: 0.5025 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0399 S13: -0.0807 REMARK 3 S21: 0.0504 S22: -0.0928 S23: 0.0700 REMARK 3 S31: 0.0261 S32: 0.0180 S33: 0.1023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.6018 5.0827 21.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: 0.2129 REMARK 3 T33: 0.2022 T12: -0.0288 REMARK 3 T13: -0.0424 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.7858 L22: 7.3312 REMARK 3 L33: 1.5768 L12: -2.0174 REMARK 3 L13: -0.3222 L23: 0.2693 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: -0.1617 S13: 0.3211 REMARK 3 S21: -0.0247 S22: 0.1445 S23: -0.1223 REMARK 3 S31: -0.1504 S32: 0.1143 S33: -0.0758 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.5341 -7.8200 28.1796 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.1954 REMARK 3 T33: 0.1714 T12: 0.0260 REMARK 3 T13: -0.0203 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.6041 L22: 6.9819 REMARK 3 L33: 2.0389 L12: -0.2937 REMARK 3 L13: -0.0341 L23: 0.3159 REMARK 3 S TENSOR REMARK 3 S11: -0.1705 S12: -0.2001 S13: -0.0716 REMARK 3 S21: 0.6005 S22: 0.0950 S23: 0.2186 REMARK 3 S31: 0.0622 S32: -0.1023 S33: 0.0797 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5524 -20.0022 22.8405 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.2746 REMARK 3 T33: 0.2573 T12: 0.0422 REMARK 3 T13: -0.0271 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.0165 L22: 2.9963 REMARK 3 L33: 2.8875 L12: -0.5857 REMARK 3 L13: -0.3460 L23: 0.2387 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0348 S13: -0.0856 REMARK 3 S21: 0.1600 S22: 0.2215 S23: -0.3418 REMARK 3 S31: 0.3524 S32: 0.3371 S33: -0.1272 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.9162 -0.8723 30.8343 REMARK 3 T TENSOR REMARK 3 T11: 0.3298 T22: 0.3105 REMARK 3 T33: 0.2658 T12: 0.0430 REMARK 3 T13: -0.0939 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 3.8022 L22: 2.1074 REMARK 3 L33: 3.3787 L12: 1.2660 REMARK 3 L13: 0.8485 L23: 0.9295 REMARK 3 S TENSOR REMARK 3 S11: -0.0835 S12: -0.1979 S13: 0.2255 REMARK 3 S21: 0.4696 S22: 0.0791 S23: -0.1759 REMARK 3 S31: -0.1536 S32: 0.3232 S33: 0.0317 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22788 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.60 REMARK 200 R MERGE FOR SHELL (I) : 0.97400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 6U0Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TATRATE, 20 % (W/V) PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.94967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.89933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.94967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.89933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.94967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.89933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.94967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.89933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -104.41000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -104.41000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 413 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 472 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 16 REMARK 465 ASN A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 465 THR A 289 REMARK 465 ARG A 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 156.00 72.49 REMARK 500 ALA A 106 56.34 -98.20 REMARK 500 ASP A 195 -95.00 50.26 REMARK 500 TYR A 220 73.16 -151.12 REMARK 500 CYS A 239 76.08 -156.27 REMARK 500 ASN A 251 30.85 71.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 HIS A 107 ND1 101.6 REMARK 620 3 HIS A 181 NE2 98.3 106.7 REMARK 620 4 LMP A 303 O71 121.7 108.3 118.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD2 REMARK 620 2 HIS A 110 NE2 90.1 REMARK 620 3 HIS A 246 NE2 92.5 95.0 REMARK 620 4 LMP A 303 O32 176.0 93.1 89.6 REMARK 620 5 LMP A 303 N4 96.1 169.7 93.0 80.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMP A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U0Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APO-FORM REMARK 900 RELATED ID: 6U0Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN, IN THE COMPLEX WITH PENICILLIN G REMARK 900 RELATED ID: 6U10 RELATED DB: PDB REMARK 900 THE SAME PROTEIN, IN THE COMPLEX WITH CAPTOPRIL REMARK 900 RELATED ID: 6U13 RELATED DB: PDB REMARK 900 THE SAME PROTEIN, IN THE COMPLEX WITH MOXALACTAM REMARK 900 RELATED ID: 6U2Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH TWO NI IONS IN THE COMPLEX WITH MOXALACTAM REMARK 900 RELATED ID: 6U2Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH TWO CU IONS IN THE COMPLEX WITH MOXALACTAM REMARK 900 RELATED ID: 6UA1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT METAL REMARK 900 RELATED ID: 6UAC RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH TWO CD IONS IN THE COMPLEX WITH MOXALACTAM REMARK 900 RELATED ID: 6UAF RELATED DB: PDB REMARK 900 THE SAME PROTEIN, IN THE COMPLEX WITH IMIPENEM REMARK 900 RELATED ID: CSGID-IDP97218 RELATED DB: TARGETTRACK DBREF 6UAH A 19 290 UNP B2FTM1 B2FTM1_STRMK 19 290 SEQADV 6UAH SER A 16 UNP B2FTM1 EXPRESSION TAG SEQADV 6UAH ASN A 17 UNP B2FTM1 EXPRESSION TAG SEQADV 6UAH ALA A 18 UNP B2FTM1 EXPRESSION TAG SEQRES 1 A 275 SER ASN ALA ALA SER ALA ALA GLU ALA PRO LEU PRO GLN SEQRES 2 A 275 LEU ARG ALA TYR THR VAL ASP ALA SER TRP LEU GLN PRO SEQRES 3 A 275 MET ALA PRO LEU GLN VAL ALA ASP HIS THR TRP GLN ILE SEQRES 4 A 275 GLY THR GLU ASP LEU THR ALA LEU LEU VAL GLN THR ALA SEQRES 5 A 275 GLU GLY ALA VAL LEU LEU ASP GLY GLY MET PRO GLN MET SEQRES 6 A 275 ALA GLY HIS LEU LEU ASP ASN MET LYS LEU ARG GLY VAL SEQRES 7 A 275 ALA PRO GLN ASP LEU ARG LEU ILE LEU LEU SER HIS ALA SEQRES 8 A 275 HIS ALA ASP HIS ALA GLY PRO VAL ALA GLU LEU LYS ARG SEQRES 9 A 275 ARG THR GLY ALA HIS VAL ALA ALA ASN ALA GLU THR ALA SEQRES 10 A 275 VAL LEU LEU ALA ARG GLY GLY SER ASN ASP LEU HIS PHE SEQRES 11 A 275 GLY ASP GLY ILE THR TYR PRO PRO ALA SER ALA ASP ARG SEQRES 12 A 275 ILE ILE MET ASP GLY GLU VAL VAL THR VAL GLY GLY ILE SEQRES 13 A 275 ALA PHE THR ALA HIS PHE MET PRO GLY HIS THR PRO GLY SEQRES 14 A 275 SER THR ALA TRP THR TRP THR ASP THR ARG ASP GLY LYS SEQRES 15 A 275 PRO VAL ARG ILE ALA TYR ALA ASP SER LEU SER ALA PRO SEQRES 16 A 275 GLY TYR GLN LEU LYS GLY ASN PRO ARG TYR PRO ARG LEU SEQRES 17 A 275 ILE GLU ASP TYR LYS ARG SER PHE ALA THR VAL ARG ALA SEQRES 18 A 275 LEU PRO CYS ASP LEU LEU LEU THR PRO HIS PRO GLY ALA SEQRES 19 A 275 SER ASN TRP ASN TYR ALA VAL GLY SER LYS ALA SER ALA SEQRES 20 A 275 GLU ALA LEU THR CYS ASN ALA TYR ALA ASP ALA ALA GLU SEQRES 21 A 275 LYS LYS PHE ASP ALA GLN LEU ALA ARG GLU THR ALA GLY SEQRES 22 A 275 THR ARG HET ZN A 301 1 HET ZN A 302 1 HET LMP A 303 27 HET PGE A 304 10 HET EDO A 305 4 HETNAM ZN ZINC ION HETNAM LMP (2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-BIS(OXIDANYL)- HETNAM 2 LMP 1-OXIDANYLIDENE-BUTAN-2-YL]-4-[(3~{S},5~{S})-5- HETNAM 3 LMP (DIMETHYLCARBAMOY L)PYRROLIDIN-3-YL]SULFANYL-3-METHYL- HETNAM 4 LMP 3,4-DIHYDRO-2~{H}-PYRROLE-5-CARBOXYLIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN LMP HYDROLYZED MEROPENEM HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 LMP C17 H27 N3 O6 S FORMUL 5 PGE C6 H14 O4 FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *148(H2 O) HELIX 1 AA1 ASP A 35 GLN A 40 5 6 HELIX 2 AA2 MET A 77 GLN A 79 5 3 HELIX 3 AA3 MET A 80 ARG A 91 1 12 HELIX 4 AA4 ALA A 94 GLN A 96 5 3 HELIX 5 AA5 HIS A 107 GLY A 112 1 6 HELIX 6 AA6 PRO A 113 GLY A 122 1 10 HELIX 7 AA7 ASN A 128 ARG A 137 1 10 HELIX 8 AA8 ARG A 222 ALA A 236 1 15 HELIX 9 AA9 HIS A 246 ASN A 251 5 6 HELIX 10 AB1 ASN A 253 ALA A 260 5 8 HELIX 11 AB2 THR A 266 GLY A 288 1 23 SHEET 1 AA1 7 LEU A 45 GLN A 46 0 SHEET 2 AA1 7 THR A 51 GLN A 53 -1 O GLN A 53 N LEU A 45 SHEET 3 AA1 7 LEU A 62 THR A 66 -1 O LEU A 63 N TRP A 52 SHEET 4 AA1 7 GLY A 69 LEU A 73 -1 O LEU A 73 N LEU A 62 SHEET 5 AA1 7 LEU A 98 LEU A 102 1 O LEU A 102 N LEU A 72 SHEET 6 AA1 7 HIS A 124 ALA A 127 1 O HIS A 124 N ILE A 101 SHEET 7 AA1 7 ARG A 158 ILE A 159 1 O ARG A 158 N ALA A 127 SHEET 1 AA2 5 VAL A 165 VAL A 168 0 SHEET 2 AA2 5 ILE A 171 PHE A 177 -1 O PHE A 173 N VAL A 166 SHEET 3 AA2 5 THR A 186 ARG A 194 -1 O ALA A 187 N HIS A 176 SHEET 4 AA2 5 LYS A 197 TYR A 203 -1 O ILE A 201 N TRP A 190 SHEET 5 AA2 5 LEU A 241 LEU A 243 1 O LEU A 241 N ALA A 202 SSBOND 1 CYS A 239 CYS A 267 1555 1555 2.06 LINK NE2 HIS A 105 ZN ZN A 301 1555 1555 2.10 LINK ND1 HIS A 107 ZN ZN A 301 1555 1555 2.15 LINK OD2 ASP A 109 ZN ZN A 302 1555 1555 2.10 LINK NE2 HIS A 110 ZN ZN A 302 1555 1555 2.11 LINK NE2 HIS A 181 ZN ZN A 301 1555 1555 2.02 LINK NE2 HIS A 246 ZN ZN A 302 1555 1555 2.13 LINK ZN ZN A 301 O71 LMP A 303 1555 1555 1.96 LINK ZN ZN A 302 O32 LMP A 303 1555 1555 2.42 LINK ZN ZN A 302 N4 LMP A 303 1555 1555 2.02 SITE 1 AC1 4 HIS A 105 HIS A 107 HIS A 181 LMP A 303 SITE 1 AC2 4 ASP A 109 HIS A 110 HIS A 246 LMP A 303 SITE 1 AC3 15 TYR A 32 HIS A 105 HIS A 107 ASP A 109 SITE 2 AC3 15 HIS A 110 PHE A 145 HIS A 181 SER A 206 SITE 3 AC3 15 SER A 208 PRO A 210 HIS A 246 LYS A 277 SITE 4 AC3 15 ZN A 301 ZN A 302 HOH A 479 SITE 1 AC4 4 ALA A 249 ALA A 273 LYS A 277 EDO A 305 SITE 1 AC5 6 ALA A 209 PRO A 210 LYS A 277 GLN A 281 SITE 2 AC5 6 PGE A 304 HOH A 402 CRYST1 104.410 104.410 98.849 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009578 0.005530 0.000000 0.00000 SCALE2 0.000000 0.011059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010116 0.00000