data_6UBG # _entry.id 6UBG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6UBG pdb_00006ubg 10.2210/pdb6ubg/pdb WWPDB D_1000244119 ? ? # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2022-02-16 _pdbx_database_PDB_obs_spr.pdb_id 7LUL _pdbx_database_PDB_obs_spr.replace_pdb_id 6UBG _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 1N7T unspecified PDB . 6Q0N unspecified PDB . 6Q0M unspecified PDB . 6Q0U unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UBG _pdbx_database_status.recvd_initial_deposition_date 2019-09-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Singer, A.U.' 1 ? 'Teyra, J.' 2 ? 'McLaughlin, M.' 3 ? 'Ernst, A.' 4 ? 'Sicheri, F.' 5 ? 'Sidhu, S.S.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Directed Evolution of PDZ fold specificity for a single peptide position' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Teyra, J.' 1 ? primary 'McLaughlin, M.' 2 ? primary 'Singer, A.' 3 ? primary 'Kelil, A.' 4 ? primary 'Kim, T.-H.' 5 ? primary 'Ernst, A.' 6 ? primary 'Sicheri, F.' 7 ? primary 'Sidhu, S.S.' 8 ? # _cell.entry_id 6UBG _cell.length_a 69.200 _cell.length_b 69.200 _cell.length_c 49.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UBG _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Erbin 10498.855 1 ? 'E1346R, H1347L, G1348E,Q1349E, V1351E, S1352R' ? ? 2 polymer syn peptide 1098.214 1 ? ? ? ? 3 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 non-polymer nat 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 7 water nat water 18.015 134 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Densin-180-like protein,Erbb2-interacting protein,Protein LAP2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SSMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIRLEEAERLLKT FQNTVELIIVREVSS ; ;SSMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIRLEEAERLLKT FQNTVELIIVREVSS ; A ? 2 'polypeptide(L)' no no RWYERWT RWYERWT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 MET n 1 4 GLU n 1 5 ILE n 1 6 ARG n 1 7 VAL n 1 8 ARG n 1 9 VAL n 1 10 GLU n 1 11 LYS n 1 12 ASP n 1 13 PRO n 1 14 GLU n 1 15 LEU n 1 16 GLY n 1 17 PHE n 1 18 SER n 1 19 ILE n 1 20 SER n 1 21 GLY n 1 22 GLY n 1 23 VAL n 1 24 GLY n 1 25 GLY n 1 26 ARG n 1 27 GLY n 1 28 ASN n 1 29 PRO n 1 30 PHE n 1 31 ARG n 1 32 PRO n 1 33 ASP n 1 34 ASP n 1 35 ASP n 1 36 GLY n 1 37 ILE n 1 38 PHE n 1 39 VAL n 1 40 THR n 1 41 ARG n 1 42 VAL n 1 43 GLN n 1 44 PRO n 1 45 GLU n 1 46 GLY n 1 47 PRO n 1 48 ALA n 1 49 SER n 1 50 LYS n 1 51 LEU n 1 52 LEU n 1 53 GLN n 1 54 PRO n 1 55 GLY n 1 56 ASP n 1 57 LYS n 1 58 ILE n 1 59 ILE n 1 60 GLN n 1 61 ALA n 1 62 ASN n 1 63 GLY n 1 64 TYR n 1 65 SER n 1 66 PHE n 1 67 ILE n 1 68 ASN n 1 69 ILE n 1 70 ARG n 1 71 LEU n 1 72 GLU n 1 73 GLU n 1 74 ALA n 1 75 GLU n 1 76 ARG n 1 77 LEU n 1 78 LEU n 1 79 LYS n 1 80 THR n 1 81 PHE n 1 82 GLN n 1 83 ASN n 1 84 THR n 1 85 VAL n 1 86 GLU n 1 87 LEU n 1 88 ILE n 1 89 ILE n 1 90 VAL n 1 91 ARG n 1 92 GLU n 1 93 VAL n 1 94 SER n 1 95 SER n 2 1 ARG n 2 2 TRP n 2 3 TYR n 2 4 GLU n 2 5 ARG n 2 6 TRP n 2 7 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 95 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ERBIN, ERBB2IP, KIAA1225, LAP2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details '6His and GST at N-terminus followed by TEV cleavage site' _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHH0103 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP ERBIN_HUMAN Q96RT1 Q96RT1-2 1 ;EIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQN TVELIIVREVSS ; 1280 2 PDB 6UBG 6UBG ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6UBG A 4 ? 95 ? Q96RT1 1280 ? 1371 ? 22 113 2 2 6UBG B 1 ? 7 ? 6UBG -4 ? 2 ? -4 2 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6UBG SER A 1 ? UNP Q96RT1 ? ? 'expression tag' 19 1 1 6UBG SER A 2 ? UNP Q96RT1 ? ? 'expression tag' 20 2 1 6UBG MET A 3 ? UNP Q96RT1 ? ? 'expression tag' 21 3 1 6UBG ARG A 70 ? UNP Q96RT1 GLU 1346 'engineered mutation' 88 4 1 6UBG LEU A 71 ? UNP Q96RT1 HIS 1347 'engineered mutation' 89 5 1 6UBG GLU A 72 ? UNP Q96RT1 GLY 1348 'engineered mutation' 90 6 1 6UBG GLU A 73 ? UNP Q96RT1 GLN 1349 'engineered mutation' 91 7 1 6UBG GLU A 75 ? UNP Q96RT1 VAL 1351 'engineered mutation' 93 8 1 6UBG ARG A 76 ? UNP Q96RT1 SER 1352 'engineered mutation' 94 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UBG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '12% PEG8K, 100 mM MES pH 6.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details Mirrors _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-01-26 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 6UBG _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 59.930 _reflns.d_resolution_high 1.550 _reflns.number_obs 18361 _reflns.number_all ? _reflns.percent_possible_obs 91.3 _reflns.pdbx_Rmerge_I_obs 0.03300 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 34.9000 _reflns.B_iso_Wilson_estimate 13.50 _reflns.pdbx_redundancy 8.900 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.50100 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.500 _reflns_shell.pdbx_redundancy 2.20 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 6UBG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15247 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.03 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.173 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.171 _refine.ls_R_factor_R_free 0.188 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 1524 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.84 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 'SWISS-MODELLER MODEL OF THE MM2 PDZ DOMAIN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 810 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 968 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 38.03 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.7000 _refine_ls_shell.d_res_low 1.7550 _refine_ls_shell.number_reflns_R_work 1188 _refine_ls_shell.R_factor_R_work 0.2391 _refine_ls_shell.percent_reflns_obs 96.00 _refine_ls_shell.R_factor_R_free 0.2758 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 129 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 6UBG _struct.title 'Structure of the MM2 Erbin PDZ variant in complex with a high-affinity peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UBG _struct_keywords.text 'Phage display, directed evolution, -2 position, specificity, phage library, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id ARG _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 70 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id PHE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 81 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ARG _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 88 _struct_conf.end_auth_comp_id PHE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 99 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id metalc1 _struct_conn.conn_type_id metalc _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 12 _struct_conn.ptnr1_label_atom_id OD2 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id NA _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 30 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 203 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.590 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 12 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 30 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 13 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 31 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.83 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 2 ? GLU A 10 ? SER A 20 GLU A 28 AA1 2 THR A 84 ? GLU A 92 ? THR A 102 GLU A 110 AA1 3 LYS A 57 ? ALA A 61 ? LYS A 75 ALA A 79 AA1 4 TYR A 64 ? SER A 65 ? TYR A 82 SER A 83 AA2 1 SER A 2 ? GLU A 10 ? SER A 20 GLU A 28 AA2 2 THR A 84 ? GLU A 92 ? THR A 102 GLU A 110 AA2 3 LYS A 57 ? ALA A 61 ? LYS A 75 ALA A 79 AA2 4 ILE A 37 ? VAL A 42 ? ILE A 55 VAL A 60 AA2 5 PHE A 17 ? GLY A 21 ? PHE A 35 GLY A 39 AA2 6 ARG B 5 ? TRP B 6 ? ARG B 0 TRP B 1 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 7 ? N VAL A 25 O LEU A 87 ? O LEU A 105 AA1 2 3 O ILE A 88 ? O ILE A 106 N ILE A 59 ? N ILE A 77 AA1 3 4 N ALA A 61 ? N ALA A 79 O TYR A 64 ? O TYR A 82 AA2 1 2 N VAL A 7 ? N VAL A 25 O LEU A 87 ? O LEU A 105 AA2 2 3 O ILE A 88 ? O ILE A 106 N ILE A 59 ? N ILE A 77 AA2 3 4 O ILE A 58 ? O ILE A 76 N ILE A 37 ? N ILE A 55 AA2 4 5 O THR A 40 ? O THR A 58 N SER A 18 ? N SER A 36 AA2 5 6 N ILE A 19 ? N ILE A 37 O ARG B 5 ? O ARG B 0 # _atom_sites.entry_id 6UBG _atom_sites.fract_transf_matrix[1][1] 0.014451 _atom_sites.fract_transf_matrix[1][2] 0.008343 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016686 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020325 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 19 19 SER SER A . n A 1 2 SER 2 20 20 SER SER A . n A 1 3 MET 3 21 21 MET MET A . n A 1 4 GLU 4 22 22 GLU GLU A . n A 1 5 ILE 5 23 23 ILE ILE A . n A 1 6 ARG 6 24 24 ARG ARG A . n A 1 7 VAL 7 25 25 VAL VAL A . n A 1 8 ARG 8 26 26 ARG ARG A . n A 1 9 VAL 9 27 27 VAL VAL A . n A 1 10 GLU 10 28 28 GLU GLU A . n A 1 11 LYS 11 29 29 LYS LYS A . n A 1 12 ASP 12 30 30 ASP ASP A . n A 1 13 PRO 13 31 31 PRO PRO A . n A 1 14 GLU 14 32 32 GLU GLU A . n A 1 15 LEU 15 33 33 LEU LEU A . n A 1 16 GLY 16 34 34 GLY GLY A . n A 1 17 PHE 17 35 35 PHE PHE A . n A 1 18 SER 18 36 36 SER SER A . n A 1 19 ILE 19 37 37 ILE ILE A . n A 1 20 SER 20 38 38 SER SER A . n A 1 21 GLY 21 39 39 GLY GLY A . n A 1 22 GLY 22 40 40 GLY GLY A . n A 1 23 VAL 23 41 41 VAL VAL A . n A 1 24 GLY 24 42 42 GLY GLY A . n A 1 25 GLY 25 43 43 GLY GLY A . n A 1 26 ARG 26 44 44 ARG ARG A . n A 1 27 GLY 27 45 45 GLY GLY A . n A 1 28 ASN 28 46 46 ASN ASN A . n A 1 29 PRO 29 47 47 PRO PRO A . n A 1 30 PHE 30 48 48 PHE PHE A . n A 1 31 ARG 31 49 49 ARG ARG A . n A 1 32 PRO 32 50 50 PRO PRO A . n A 1 33 ASP 33 51 51 ASP ASP A . n A 1 34 ASP 34 52 52 ASP ASP A . n A 1 35 ASP 35 53 53 ASP ASP A . n A 1 36 GLY 36 54 54 GLY GLY A . n A 1 37 ILE 37 55 55 ILE ILE A . n A 1 38 PHE 38 56 56 PHE PHE A . n A 1 39 VAL 39 57 57 VAL VAL A . n A 1 40 THR 40 58 58 THR THR A . n A 1 41 ARG 41 59 59 ARG ARG A . n A 1 42 VAL 42 60 60 VAL VAL A . n A 1 43 GLN 43 61 61 GLN GLN A . n A 1 44 PRO 44 62 62 PRO PRO A . n A 1 45 GLU 45 63 63 GLU GLU A . n A 1 46 GLY 46 64 64 GLY GLY A . n A 1 47 PRO 47 65 65 PRO PRO A . n A 1 48 ALA 48 66 66 ALA ALA A . n A 1 49 SER 49 67 67 SER SER A . n A 1 50 LYS 50 68 68 LYS LYS A . n A 1 51 LEU 51 69 69 LEU LEU A . n A 1 52 LEU 52 70 70 LEU LEU A . n A 1 53 GLN 53 71 71 GLN GLN A . n A 1 54 PRO 54 72 72 PRO PRO A . n A 1 55 GLY 55 73 73 GLY GLY A . n A 1 56 ASP 56 74 74 ASP ASP A . n A 1 57 LYS 57 75 75 LYS LYS A . n A 1 58 ILE 58 76 76 ILE ILE A . n A 1 59 ILE 59 77 77 ILE ILE A . n A 1 60 GLN 60 78 78 GLN GLN A . n A 1 61 ALA 61 79 79 ALA ALA A . n A 1 62 ASN 62 80 80 ASN ASN A . n A 1 63 GLY 63 81 81 GLY GLY A . n A 1 64 TYR 64 82 82 TYR TYR A . n A 1 65 SER 65 83 83 SER SER A . n A 1 66 PHE 66 84 84 PHE PHE A . n A 1 67 ILE 67 85 85 ILE ILE A . n A 1 68 ASN 68 86 86 ASN ASN A . n A 1 69 ILE 69 87 87 ILE ILE A . n A 1 70 ARG 70 88 88 ARG ARG A . n A 1 71 LEU 71 89 89 LEU LEU A . n A 1 72 GLU 72 90 90 GLU GLU A . n A 1 73 GLU 73 91 91 GLU GLU A . n A 1 74 ALA 74 92 92 ALA ALA A . n A 1 75 GLU 75 93 93 GLU GLU A . n A 1 76 ARG 76 94 94 ARG ARG A . n A 1 77 LEU 77 95 95 LEU LEU A . n A 1 78 LEU 78 96 96 LEU LEU A . n A 1 79 LYS 79 97 97 LYS LYS A . n A 1 80 THR 80 98 98 THR THR A . n A 1 81 PHE 81 99 99 PHE PHE A . n A 1 82 GLN 82 100 100 GLN GLN A . n A 1 83 ASN 83 101 101 ASN ASN A . n A 1 84 THR 84 102 102 THR THR A . n A 1 85 VAL 85 103 103 VAL VAL A . n A 1 86 GLU 86 104 104 GLU GLU A . n A 1 87 LEU 87 105 105 LEU LEU A . n A 1 88 ILE 88 106 106 ILE ILE A . n A 1 89 ILE 89 107 107 ILE ILE A . n A 1 90 VAL 90 108 108 VAL VAL A . n A 1 91 ARG 91 109 109 ARG ARG A . n A 1 92 GLU 92 110 110 GLU GLU A . n A 1 93 VAL 93 111 111 VAL VAL A . n A 1 94 SER 94 112 112 SER SER A . n A 1 95 SER 95 113 ? ? ? A . n B 2 1 ARG 1 -4 -4 ARG ARG B . n B 2 2 TRP 2 -3 -3 TRP TRP B . n B 2 3 TYR 3 -2 -2 TYR TYR B . n B 2 4 GLU 4 -1 -1 GLU GLU B . n B 2 5 ARG 5 0 0 ARG ARG B . n B 2 6 TRP 6 1 1 TRP TRP B . n B 2 7 THR 7 2 2 THR THR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MES 1 201 201 MES MES A . D 4 EDO 1 202 202 EDO EDO A . E 5 NA 1 203 203 NA NA A . F 6 PEG 1 101 101 PEG PEG B . G 7 HOH 1 301 301 HOH HOH A . G 7 HOH 2 302 302 HOH HOH A . G 7 HOH 3 303 303 HOH HOH A . G 7 HOH 4 304 304 HOH HOH A . G 7 HOH 5 305 305 HOH HOH A . G 7 HOH 6 306 306 HOH HOH A . G 7 HOH 7 307 307 HOH HOH A . G 7 HOH 8 308 308 HOH HOH A . G 7 HOH 9 309 309 HOH HOH A . G 7 HOH 10 310 310 HOH HOH A . G 7 HOH 11 311 311 HOH HOH A . G 7 HOH 12 312 312 HOH HOH A . G 7 HOH 13 313 313 HOH HOH A . G 7 HOH 14 314 314 HOH HOH A . G 7 HOH 15 315 315 HOH HOH A . G 7 HOH 16 316 316 HOH HOH A . G 7 HOH 17 317 317 HOH HOH A . G 7 HOH 18 318 318 HOH HOH A . G 7 HOH 19 319 319 HOH HOH A . G 7 HOH 20 320 320 HOH HOH A . G 7 HOH 21 321 321 HOH HOH A . G 7 HOH 22 322 322 HOH HOH A . G 7 HOH 23 323 323 HOH HOH A . G 7 HOH 24 324 324 HOH HOH A . G 7 HOH 25 325 325 HOH HOH A . G 7 HOH 26 326 326 HOH HOH A . G 7 HOH 27 327 327 HOH HOH A . G 7 HOH 28 328 328 HOH HOH A . G 7 HOH 29 329 329 HOH HOH A . G 7 HOH 30 330 330 HOH HOH A . G 7 HOH 31 331 331 HOH HOH A . G 7 HOH 32 332 332 HOH HOH A . G 7 HOH 33 333 333 HOH HOH A . G 7 HOH 34 334 334 HOH HOH A . G 7 HOH 35 335 335 HOH HOH A . G 7 HOH 36 336 336 HOH HOH A . G 7 HOH 37 337 337 HOH HOH A . G 7 HOH 38 338 338 HOH HOH A . G 7 HOH 39 339 339 HOH HOH A . G 7 HOH 40 340 340 HOH HOH A . G 7 HOH 41 341 341 HOH HOH A . G 7 HOH 42 342 342 HOH HOH A . G 7 HOH 43 343 343 HOH HOH A . G 7 HOH 44 344 344 HOH HOH A . G 7 HOH 45 345 345 HOH HOH A . G 7 HOH 46 346 346 HOH HOH A . G 7 HOH 47 347 347 HOH HOH A . G 7 HOH 48 348 348 HOH HOH A . G 7 HOH 49 349 349 HOH HOH A . G 7 HOH 50 350 350 HOH HOH A . G 7 HOH 51 351 351 HOH HOH A . G 7 HOH 52 352 352 HOH HOH A . G 7 HOH 53 353 353 HOH HOH A . G 7 HOH 54 354 354 HOH HOH A . G 7 HOH 55 355 355 HOH HOH A . G 7 HOH 56 356 356 HOH HOH A . G 7 HOH 57 357 357 HOH HOH A . G 7 HOH 58 358 358 HOH HOH A . G 7 HOH 59 359 359 HOH HOH A . G 7 HOH 60 360 360 HOH HOH A . G 7 HOH 61 361 361 HOH HOH A . G 7 HOH 62 362 362 HOH HOH A . G 7 HOH 63 363 363 HOH HOH A . G 7 HOH 64 364 364 HOH HOH A . G 7 HOH 65 365 365 HOH HOH A . G 7 HOH 66 366 366 HOH HOH A . G 7 HOH 67 367 367 HOH HOH A . G 7 HOH 68 368 368 HOH HOH A . G 7 HOH 69 369 369 HOH HOH A . G 7 HOH 70 370 370 HOH HOH A . G 7 HOH 71 371 371 HOH HOH A . G 7 HOH 72 372 372 HOH HOH A . G 7 HOH 73 373 373 HOH HOH A . G 7 HOH 74 374 374 HOH HOH A . G 7 HOH 75 375 375 HOH HOH A . G 7 HOH 76 376 376 HOH HOH A . G 7 HOH 77 377 377 HOH HOH A . G 7 HOH 78 378 378 HOH HOH A . G 7 HOH 79 379 379 HOH HOH A . G 7 HOH 80 380 380 HOH HOH A . G 7 HOH 81 381 381 HOH HOH A . G 7 HOH 82 382 382 HOH HOH A . G 7 HOH 83 383 383 HOH HOH A . G 7 HOH 84 384 384 HOH HOH A . G 7 HOH 85 385 385 HOH HOH A . G 7 HOH 86 386 386 HOH HOH A . G 7 HOH 87 387 387 HOH HOH A . G 7 HOH 88 388 388 HOH HOH A . G 7 HOH 89 389 389 HOH HOH A . G 7 HOH 90 390 390 HOH HOH A . G 7 HOH 91 391 391 HOH HOH A . G 7 HOH 92 392 392 HOH HOH A . G 7 HOH 93 393 393 HOH HOH A . G 7 HOH 94 394 394 HOH HOH A . G 7 HOH 95 395 395 HOH HOH A . G 7 HOH 96 396 396 HOH HOH A . G 7 HOH 97 397 397 HOH HOH A . G 7 HOH 98 398 398 HOH HOH A . G 7 HOH 99 399 399 HOH HOH A . G 7 HOH 100 400 400 HOH HOH A . G 7 HOH 101 401 401 HOH HOH A . G 7 HOH 102 402 402 HOH HOH A . G 7 HOH 103 403 403 HOH HOH A . G 7 HOH 104 404 404 HOH HOH A . G 7 HOH 105 405 405 HOH HOH A . G 7 HOH 106 406 406 HOH HOH A . G 7 HOH 107 407 407 HOH HOH A . G 7 HOH 108 408 408 HOH HOH A . G 7 HOH 109 409 409 HOH HOH A . G 7 HOH 110 410 410 HOH HOH A . G 7 HOH 111 411 411 HOH HOH A . G 7 HOH 112 412 412 HOH HOH A . G 7 HOH 113 413 413 HOH HOH A . G 7 HOH 114 414 414 HOH HOH A . G 7 HOH 115 415 415 HOH HOH A . G 7 HOH 116 416 416 HOH HOH A . G 7 HOH 117 417 417 HOH HOH A . G 7 HOH 118 418 418 HOH HOH A . G 7 HOH 119 419 419 HOH HOH A . G 7 HOH 120 420 420 HOH HOH A . G 7 HOH 121 421 421 HOH HOH A . G 7 HOH 122 422 422 HOH HOH A . G 7 HOH 123 423 423 HOH HOH A . H 7 HOH 1 201 201 HOH HOH B . H 7 HOH 2 202 202 HOH HOH B . H 7 HOH 3 203 203 HOH HOH B . H 7 HOH 4 204 204 HOH HOH B . H 7 HOH 5 205 205 HOH HOH B . H 7 HOH 6 206 206 HOH HOH B . H 7 HOH 7 207 207 HOH HOH B . H 7 HOH 8 208 208 HOH HOH B . H 7 HOH 9 209 209 HOH HOH B . H 7 HOH 10 210 210 HOH HOH B . H 7 HOH 11 211 211 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1760 ? 1 MORE -7 ? 1 'SSA (A^2)' 6020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MES 201 ? C MES . 2 1 A HOH 393 ? G HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-29 2 'Structure model' 1 1 2022-02-16 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_PDB_obs_spr 3 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code' 4 2 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 4 x-y,-y,-z+1/3 5 -x,-x+y,-z+2/3 6 y,x,-z # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -20.9083 -14.4077 1.4438 0.1199 0.0727 0.1166 0.0076 -0.0039 -0.0075 2.2722 0.7622 1.6393 0.2078 -0.1389 -0.1702 0.0380 0.1806 -0.0497 -0.0860 -0.0597 -0.0842 0.1025 0.0557 0.0209 'X-RAY DIFFRACTION' 2 ? refined -22.4601 -17.0039 14.9651 0.1101 0.1172 0.1002 -0.0082 -0.0068 -0.0018 1.6733 3.2809 2.9169 1.0316 0.0858 0.9914 0.0553 -0.1468 -0.0599 0.2629 -0.0594 -0.1356 0.1130 -0.0102 -0.0194 'X-RAY DIFFRACTION' 3 ? refined -24.6193 -21.4350 -0.8445 0.2363 0.1182 0.1433 -0.0426 -0.0381 -0.0258 6.4534 2.3612 6.4042 -2.8905 2.2926 -2.5937 0.5170 0.4445 -0.5895 -0.8254 0.1885 0.2826 0.5890 0.1369 -0.3580 'X-RAY DIFFRACTION' 4 ? refined -20.0904 -9.0810 7.0970 0.0989 0.1028 0.1284 -0.0067 0.0003 -0.0055 1.6463 2.0478 2.0693 -0.2583 -0.4408 0.4218 0.0242 -0.0311 0.0908 0.0623 -0.0683 -0.0213 -0.1191 0.0038 0.0302 'X-RAY DIFFRACTION' 5 ? refined -30.5489 -15.1893 13.5761 0.1174 0.1586 0.1448 -0.0027 0.0245 -0.0020 0.2993 3.7598 3.0697 -0.4197 0.8764 -2.4438 -0.0112 -0.0729 -0.0731 0.2792 0.0687 0.0860 -0.1675 -0.2524 -0.1225 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 19 through 39 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 40 through 62 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 63 through 72 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 73 through 112 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid -4 through 2 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 6UBG _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 28 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 102 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 30 ? ? -162.72 62.74 2 1 ASN A 101 ? ? 62.72 -117.02 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id LYS _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 68 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id NZ _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id LYS _pdbx_unobs_or_zero_occ_atoms.label_seq_id 50 _pdbx_unobs_or_zero_occ_atoms.label_atom_id NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 113 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 95 # _pdbx_audit_support.funding_organization 'Canadian Institutes of Health Research (CIHR)' _pdbx_audit_support.country Canada _pdbx_audit_support.grant_number MOP-93684 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 4 1,2-ETHANEDIOL EDO 5 'SODIUM ION' NA 6 'DI(HYDROXYETHYL)ETHER' PEG 7 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system trigonal _space_group.name_H-M_alt 'P 32 2 1' _space_group.IT_number 154 _space_group.name_Hall ;P 32 2" ; _space_group.id 1 #