data_6UBU # _entry.id 6UBU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6UBU pdb_00006ubu 10.2210/pdb6ubu/pdb WWPDB D_1000243071 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UBU _pdbx_database_status.recvd_initial_deposition_date 2019-09-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Matyjasik, M.M.' 1 0000-0002-5887-8428 'Batey, R.T.' 2 0000-0002-1384-6625 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Molecules _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1420-3049 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/molecules25102295 _citation.pdbx_database_id_PubMed 32414072 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matyjasik, M.M.' 1 ? primary 'Hall, S.D.' 2 ? primary 'Batey, R.T.' 3 0000-0002-1384-6625 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.860 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6UBU _cell.details ? _cell.formula_units_Z ? _cell.length_a 132.175 _cell.length_a_esd ? _cell.length_b 35.260 _cell.length_b_esd ? _cell.length_c 42.276 _cell.length_c_esd ? _cell.volume 197004.495 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Guanine riboswitch aptamer domain' 21506.783 1 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 7 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 3 ? ? ? ? 4 non-polymer syn GUANINE 151.126 1 ? ? ? ? 5 water nat water 18.015 240 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 C n 1 61 U n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 67 _pdbx_entity_src_syn.organism_scientific 'Bacillus subtilis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1423 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6UBU _struct_ref.pdbx_db_accession 6UBU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6UBU _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6UBU _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GUN non-polymer . GUANINE ? 'C5 H5 N5 O' 151.126 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UBU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10 mM potassium HEPES pH 7.5, 20% v/v PEG 3000 MW, 40-50 mM cobalt hexamine, 600-650 mM ammonium acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details 'Liquid nitrogen cryostream' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 200K' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-04-25 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator Cu _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5406 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5406 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 20.23 _reflns.entry_id 6UBU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.597 _reflns.d_resolution_low 19.66 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 37435 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 83.41 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.131 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.67 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 2.015 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.131 _reflns.pdbx_Rpim_I_all 0.061 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.597 _reflns_shell.d_res_low 1.654 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.876 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 593 _reflns_shell.percent_possible_all 23.15 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.361 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 2.382 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.622 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 28.48 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6UBU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.60 _refine.ls_d_res_low 19.66 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 37435 _refine.ls_number_reflns_R_free 3417 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 73.78 _refine.ls_percent_reflns_R_free 9.13 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2022 _refine.ls_R_factor_R_free 0.2200 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2004 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4FE5 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.37 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.16 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 19.66 _refine_hist.number_atoms_solvent 240 _refine_hist.number_atoms_total 1734 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 67 _refine_hist.pdbx_B_iso_mean_ligand 28.31 _refine_hist.pdbx_B_iso_mean_solvent 31.13 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1422 _refine_hist.pdbx_number_atoms_ligand 72 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0051 ? 1652 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0220 ? 2605 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0418 ? 334 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0077 ? 71 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 12.6030 ? 800 ? f_dihedral_angle_d ? ? # _struct.entry_id 6UBU _struct.title '1.60 A resolution structure of the guanine riboswitch bound to guanine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UBU _struct_keywords.text 'riboswitch aptamer guanine purine nucleobase, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 67 N3 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 67 O2 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 67 N4 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? B G 16 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? B G 16 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? B G 16 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? B C 18 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? B C 18 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? B C 18 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 61 N3 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 61 O4 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N4 ? ? ? 1_555 A A 30 N1 ? ? B C 26 B A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? B G 27 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? B G 27 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? B G 27 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? B U 30 B A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? B U 30 B A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? B G 31 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? B G 31 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? B G 31 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog40 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog41 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 23 N2 ? ? B U 34 B G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog42 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog43 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog44 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? B A 35 B A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog45 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? B A 35 B A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog46 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog53 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog54 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? B U 47 B U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog58 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? B U 49 B A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog59 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 61 O2 ? ? B C 50 B U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog60 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? B G 55 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? B G 55 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? B G 55 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? B G 57 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? B G 57 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? B A 59 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? B A 59 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? B C 61 B A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NCO 101 ? 5 'binding site for residue NCO B 101' AC2 Software B NCO 102 ? 8 'binding site for residue NCO B 102' AC3 Software B NCO 103 ? 8 'binding site for residue NCO B 103' AC4 Software B NCO 104 ? 11 'binding site for residue NCO B 104' AC5 Software B NCO 105 ? 5 'binding site for residue NCO B 105' AC6 Software B NCO 106 ? 9 'binding site for residue NCO B 106' AC7 Software B NCO 107 ? 6 'binding site for residue NCO B 107' AC8 Software B ACT 108 ? 7 'binding site for residue ACT B 108' AC9 Software B ACT 109 ? 4 'binding site for residue ACT B 109' AD1 Software B ACT 110 ? 4 'binding site for residue ACT B 110' AD2 Software B GUN 111 ? 9 'binding site for residue GUN B 111' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 A A 9 ? A B 23 . ? 1_555 ? 2 AC1 5 A A 10 ? A B 24 . ? 1_555 ? 3 AC1 5 C A 57 ? C B 71 . ? 1_555 ? 4 AC1 5 HOH M . ? HOH B 211 . ? 1_555 ? 5 AC1 5 HOH M . ? HOH B 359 . ? 1_555 ? 6 AC2 8 U A 16 ? U B 30 . ? 1_555 ? 7 AC2 8 G A 17 ? G B 31 . ? 1_555 ? 8 AC2 8 G A 18 ? G B 32 . ? 1_555 ? 9 AC2 8 A A 51 ? A B 65 . ? 1_555 ? 10 AC2 8 A A 52 ? A B 66 . ? 1_555 ? 11 AC2 8 HOH M . ? HOH B 274 . ? 1_555 ? 12 AC2 8 HOH M . ? HOH B 339 . ? 1_555 ? 13 AC2 8 HOH M . ? HOH B 357 . ? 1_555 ? 14 AC3 8 G A 15 ? G B 29 . ? 4_545 ? 15 AC3 8 U A 16 ? U B 30 . ? 4_545 ? 16 AC3 8 A A 52 ? A B 66 . ? 1_555 ? 17 AC3 8 U A 53 ? U B 67 . ? 1_555 ? 18 AC3 8 HOH M . ? HOH B 243 . ? 4_545 ? 19 AC3 8 HOH M . ? HOH B 356 . ? 1_555 ? 20 AC3 8 HOH M . ? HOH B 371 . ? 4_555 ? 21 AC3 8 HOH M . ? HOH B 383 . ? 1_555 ? 22 AC4 11 C A 25 ? C B 39 . ? 1_555 ? 23 AC4 11 G A 41 ? G B 55 . ? 1_555 ? 24 AC4 11 G A 42 ? G B 56 . ? 1_555 ? 25 AC4 11 G A 43 ? G B 57 . ? 1_555 ? 26 AC4 11 G A 54 ? G B 68 . ? 1_555 ? 27 AC4 11 U A 55 ? U B 69 . ? 1_555 ? 28 AC4 11 HOH M . ? HOH B 222 . ? 1_555 ? 29 AC4 11 HOH M . ? HOH B 231 . ? 1_555 ? 30 AC4 11 HOH M . ? HOH B 319 . ? 1_555 ? 31 AC4 11 HOH M . ? HOH B 349 . ? 1_555 ? 32 AC4 11 HOH M . ? HOH B 385 . ? 1_555 ? 33 AC5 5 G A 23 ? G B 37 . ? 1_555 ? 34 AC5 5 G A 24 ? G B 38 . ? 1_555 ? 35 AC5 5 C A 44 ? C B 58 . ? 1_555 ? 36 AC5 5 HOH M . ? HOH B 337 . ? 1_555 ? 37 AC5 5 HOH M . ? HOH B 367 . ? 1_555 ? 38 AC6 9 G A 24 ? G B 38 . ? 1_555 ? 39 AC6 9 C A 25 ? C B 39 . ? 1_555 ? 40 AC6 9 G A 42 ? G B 56 . ? 1_555 ? 41 AC6 9 G A 43 ? G B 57 . ? 4_556 ? 42 AC6 9 C A 44 ? C B 58 . ? 4_556 ? 43 AC6 9 HOH M . ? HOH B 220 . ? 1_555 ? 44 AC6 9 HOH M . ? HOH B 242 . ? 1_555 ? 45 AC6 9 HOH M . ? HOH B 247 . ? 1_555 ? 46 AC6 9 HOH M . ? HOH B 276 . ? 1_555 ? 47 AC7 6 U A 22 ? U B 36 . ? 4_546 ? 48 AC7 6 G A 28 ? G B 42 . ? 1_545 ? 49 AC7 6 G A 58 ? G B 72 . ? 1_555 ? 50 AC7 6 A A 59 ? A B 73 . ? 1_555 ? 51 AC7 6 HOH M . ? HOH B 205 . ? 1_545 ? 52 AC7 6 HOH M . ? HOH B 303 . ? 1_545 ? 53 AC8 7 G A 18 ? G B 32 . ? 1_555 ? 54 AC8 7 A A 19 ? A B 33 . ? 1_555 ? 55 AC8 7 G A 24 ? G B 38 . ? 1_555 ? 56 AC8 7 C A 25 ? C B 39 . ? 1_555 ? 57 AC8 7 A A 52 ? A B 66 . ? 1_555 ? 58 AC8 7 U A 53 ? U B 67 . ? 1_555 ? 59 AC8 7 HOH M . ? HOH B 318 . ? 1_555 ? 60 AC9 4 C A 27 ? C B 41 . ? 1_555 ? 61 AC9 4 HOH M . ? HOH B 202 . ? 1_555 ? 62 AC9 4 HOH M . ? HOH B 215 . ? 1_555 ? 63 AC9 4 HOH M . ? HOH B 348 . ? 1_555 ? 64 AD1 4 A A 9 ? A B 23 . ? 1_555 ? 65 AD1 4 U A 11 ? U B 25 . ? 1_555 ? 66 AD1 4 C A 12 ? C B 26 . ? 1_555 ? 67 AD1 4 HOH M . ? HOH B 272 . ? 1_555 ? 68 AD2 9 A A 7 ? A B 21 . ? 1_555 ? 69 AD2 9 U A 8 ? U B 22 . ? 1_555 ? 70 AD2 9 U A 33 ? U B 47 . ? 1_555 ? 71 AD2 9 U A 37 ? U B 51 . ? 1_555 ? 72 AD2 9 A A 38 ? A B 52 . ? 1_555 ? 73 AD2 9 A A 59 ? A B 73 . ? 1_555 ? 74 AD2 9 C A 60 ? C B 74 . ? 1_555 ? 75 AD2 9 U A 61 ? U B 75 . ? 1_555 ? 76 AD2 9 HOH M . ? HOH B 264 . ? 1_555 ? # _database_PDB_matrix.entry_id 6UBU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 6UBU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.007566 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000114 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028361 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023657 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 15 G G B . n A 1 2 G 2 16 16 G G B . n A 1 3 A 3 17 17 A A B . n A 1 4 C 4 18 18 C C B . n A 1 5 A 5 19 19 A A B . n A 1 6 U 6 20 20 U U B . n A 1 7 A 7 21 21 A A B . n A 1 8 U 8 22 22 U U B . n A 1 9 A 9 23 23 A A B . n A 1 10 A 10 24 24 A A B . n A 1 11 U 11 25 25 U U B . n A 1 12 C 12 26 26 C C B . n A 1 13 G 13 27 27 G G B . n A 1 14 C 14 28 28 C C B . n A 1 15 G 15 29 29 G G B . n A 1 16 U 16 30 30 U U B . n A 1 17 G 17 31 31 G G B . n A 1 18 G 18 32 32 G G B . n A 1 19 A 19 33 33 A A B . n A 1 20 U 20 34 34 U U B . n A 1 21 A 21 35 35 A A B . n A 1 22 U 22 36 36 U U B . n A 1 23 G 23 37 37 G G B . n A 1 24 G 24 38 38 G G B . n A 1 25 C 25 39 39 C C B . n A 1 26 A 26 40 40 A A B . n A 1 27 C 27 41 41 C C B . n A 1 28 G 28 42 42 G G B . n A 1 29 C 29 43 43 C C B . n A 1 30 A 30 44 44 A A B . n A 1 31 A 31 45 45 A A B . n A 1 32 G 32 46 46 G G B . n A 1 33 U 33 47 47 U U B . n A 1 34 U 34 48 48 U U B . n A 1 35 U 35 49 49 U U B . n A 1 36 C 36 50 50 C C B . n A 1 37 U 37 51 51 U U B . n A 1 38 A 38 52 52 A A B . n A 1 39 C 39 53 53 C C B . n A 1 40 C 40 54 54 C C B . n A 1 41 G 41 55 55 G G B . n A 1 42 G 42 56 56 G G B . n A 1 43 G 43 57 57 G G B . n A 1 44 C 44 58 58 C C B . n A 1 45 A 45 59 59 A A B . n A 1 46 C 46 60 60 C C B . n A 1 47 C 47 61 61 C C B . n A 1 48 G 48 62 62 G G B . n A 1 49 U 49 63 63 U U B . n A 1 50 A 50 64 64 A A B . n A 1 51 A 51 65 65 A A B . n A 1 52 A 52 66 66 A A B . n A 1 53 U 53 67 67 U U B . n A 1 54 G 54 68 68 G G B . n A 1 55 U 55 69 69 U U B . n A 1 56 C 56 70 70 C C B . n A 1 57 C 57 71 71 C C B . n A 1 58 G 58 72 72 G G B . n A 1 59 A 59 73 73 A A B . n A 1 60 C 60 74 74 C C B . n A 1 61 U 61 75 75 U U B . n A 1 62 A 62 76 76 A A B . n A 1 63 U 63 77 77 U U B . n A 1 64 G 64 78 78 G G B . n A 1 65 U 65 79 79 U U B . n A 1 66 C 66 80 80 C C B . n A 1 67 C 67 81 81 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCO 1 101 1 NCO NCO B . C 2 NCO 1 102 2 NCO NCO B . D 2 NCO 1 103 3 NCO NCO B . E 2 NCO 1 104 4 NCO NCO B . F 2 NCO 1 105 5 NCO NCO B . G 2 NCO 1 106 6 NCO NCO B . H 2 NCO 1 107 7 NCO NCO B . I 3 ACT 1 108 1 ACT ACT B . J 3 ACT 1 109 2 ACT ACT B . K 3 ACT 1 110 3 ACT ACT B . L 4 GUN 1 111 1 GUN GUN B . M 5 HOH 1 201 192 HOH HOH B . M 5 HOH 2 202 219 HOH HOH B . M 5 HOH 3 203 123 HOH HOH B . M 5 HOH 4 204 195 HOH HOH B . M 5 HOH 5 205 42 HOH HOH B . M 5 HOH 6 206 15 HOH HOH B . M 5 HOH 7 207 48 HOH HOH B . M 5 HOH 8 208 224 HOH HOH B . M 5 HOH 9 209 26 HOH HOH B . M 5 HOH 10 210 79 HOH HOH B . M 5 HOH 11 211 215 HOH HOH B . M 5 HOH 12 212 77 HOH HOH B . M 5 HOH 13 213 175 HOH HOH B . M 5 HOH 14 214 50 HOH HOH B . M 5 HOH 15 215 218 HOH HOH B . M 5 HOH 16 216 93 HOH HOH B . M 5 HOH 17 217 190 HOH HOH B . M 5 HOH 18 218 57 HOH HOH B . M 5 HOH 19 219 56 HOH HOH B . M 5 HOH 20 220 55 HOH HOH B . M 5 HOH 21 221 72 HOH HOH B . M 5 HOH 22 222 83 HOH HOH B . M 5 HOH 23 223 214 HOH HOH B . M 5 HOH 24 224 37 HOH HOH B . M 5 HOH 25 225 7 HOH HOH B . M 5 HOH 26 226 120 HOH HOH B . M 5 HOH 27 227 47 HOH HOH B . M 5 HOH 28 228 173 HOH HOH B . M 5 HOH 29 229 137 HOH HOH B . M 5 HOH 30 230 36 HOH HOH B . M 5 HOH 31 231 129 HOH HOH B . M 5 HOH 32 232 150 HOH HOH B . M 5 HOH 33 233 197 HOH HOH B . M 5 HOH 34 234 27 HOH HOH B . M 5 HOH 35 235 122 HOH HOH B . M 5 HOH 36 236 88 HOH HOH B . M 5 HOH 37 237 228 HOH HOH B . M 5 HOH 38 238 164 HOH HOH B . M 5 HOH 39 239 216 HOH HOH B . M 5 HOH 40 240 152 HOH HOH B . M 5 HOH 41 241 78 HOH HOH B . M 5 HOH 42 242 128 HOH HOH B . M 5 HOH 43 243 212 HOH HOH B . M 5 HOH 44 244 139 HOH HOH B . M 5 HOH 45 245 126 HOH HOH B . M 5 HOH 46 246 202 HOH HOH B . M 5 HOH 47 247 233 HOH HOH B . M 5 HOH 48 248 84 HOH HOH B . M 5 HOH 49 249 114 HOH HOH B . M 5 HOH 50 250 90 HOH HOH B . M 5 HOH 51 251 24 HOH HOH B . M 5 HOH 52 252 178 HOH HOH B . M 5 HOH 53 253 244 HOH HOH B . M 5 HOH 54 254 220 HOH HOH B . M 5 HOH 55 255 237 HOH HOH B . M 5 HOH 56 256 8 HOH HOH B . M 5 HOH 57 257 85 HOH HOH B . M 5 HOH 58 258 102 HOH HOH B . M 5 HOH 59 259 30 HOH HOH B . M 5 HOH 60 260 54 HOH HOH B . M 5 HOH 61 261 134 HOH HOH B . M 5 HOH 62 262 65 HOH HOH B . M 5 HOH 63 263 170 HOH HOH B . M 5 HOH 64 264 62 HOH HOH B . M 5 HOH 65 265 229 HOH HOH B . M 5 HOH 66 266 41 HOH HOH B . M 5 HOH 67 267 213 HOH HOH B . M 5 HOH 68 268 40 HOH HOH B . M 5 HOH 69 269 39 HOH HOH B . M 5 HOH 70 270 63 HOH HOH B . M 5 HOH 71 271 189 HOH HOH B . M 5 HOH 72 272 110 HOH HOH B . M 5 HOH 73 273 145 HOH HOH B . M 5 HOH 74 274 1 HOH HOH B . M 5 HOH 75 275 31 HOH HOH B . M 5 HOH 76 276 51 HOH HOH B . M 5 HOH 77 277 140 HOH HOH B . M 5 HOH 78 278 148 HOH HOH B . M 5 HOH 79 279 98 HOH HOH B . M 5 HOH 80 280 162 HOH HOH B . M 5 HOH 81 281 22 HOH HOH B . M 5 HOH 82 282 144 HOH HOH B . M 5 HOH 83 283 74 HOH HOH B . M 5 HOH 84 284 119 HOH HOH B . M 5 HOH 85 285 18 HOH HOH B . M 5 HOH 86 286 70 HOH HOH B . M 5 HOH 87 287 166 HOH HOH B . M 5 HOH 88 288 181 HOH HOH B . M 5 HOH 89 289 167 HOH HOH B . M 5 HOH 90 290 87 HOH HOH B . M 5 HOH 91 291 240 HOH HOH B . M 5 HOH 92 292 121 HOH HOH B . M 5 HOH 93 293 44 HOH HOH B . M 5 HOH 94 294 16 HOH HOH B . M 5 HOH 95 295 49 HOH HOH B . M 5 HOH 96 296 35 HOH HOH B . M 5 HOH 97 297 73 HOH HOH B . M 5 HOH 98 298 94 HOH HOH B . M 5 HOH 99 299 17 HOH HOH B . M 5 HOH 100 300 92 HOH HOH B . M 5 HOH 101 301 13 HOH HOH B . M 5 HOH 102 302 165 HOH HOH B . M 5 HOH 103 303 118 HOH HOH B . M 5 HOH 104 304 127 HOH HOH B . M 5 HOH 105 305 89 HOH HOH B . M 5 HOH 106 306 222 HOH HOH B . M 5 HOH 107 307 117 HOH HOH B . M 5 HOH 108 308 191 HOH HOH B . M 5 HOH 109 309 52 HOH HOH B . M 5 HOH 110 310 99 HOH HOH B . M 5 HOH 111 311 2 HOH HOH B . M 5 HOH 112 312 147 HOH HOH B . M 5 HOH 113 313 103 HOH HOH B . M 5 HOH 114 314 58 HOH HOH B . M 5 HOH 115 315 132 HOH HOH B . M 5 HOH 116 316 76 HOH HOH B . M 5 HOH 117 317 201 HOH HOH B . M 5 HOH 118 318 100 HOH HOH B . M 5 HOH 119 319 20 HOH HOH B . M 5 HOH 120 320 60 HOH HOH B . M 5 HOH 121 321 19 HOH HOH B . M 5 HOH 122 322 5 HOH HOH B . M 5 HOH 123 323 12 HOH HOH B . M 5 HOH 124 324 179 HOH HOH B . M 5 HOH 125 325 157 HOH HOH B . M 5 HOH 126 326 177 HOH HOH B . M 5 HOH 127 327 95 HOH HOH B . M 5 HOH 128 328 91 HOH HOH B . M 5 HOH 129 329 163 HOH HOH B . M 5 HOH 130 330 81 HOH HOH B . M 5 HOH 131 331 67 HOH HOH B . M 5 HOH 132 332 200 HOH HOH B . M 5 HOH 133 333 234 HOH HOH B . M 5 HOH 134 334 32 HOH HOH B . M 5 HOH 135 335 23 HOH HOH B . M 5 HOH 136 336 188 HOH HOH B . M 5 HOH 137 337 187 HOH HOH B . M 5 HOH 138 338 143 HOH HOH B . M 5 HOH 139 339 53 HOH HOH B . M 5 HOH 140 340 108 HOH HOH B . M 5 HOH 141 341 238 HOH HOH B . M 5 HOH 142 342 68 HOH HOH B . M 5 HOH 143 343 59 HOH HOH B . M 5 HOH 144 344 111 HOH HOH B . M 5 HOH 145 345 113 HOH HOH B . M 5 HOH 146 346 86 HOH HOH B . M 5 HOH 147 347 69 HOH HOH B . M 5 HOH 148 348 184 HOH HOH B . M 5 HOH 149 349 106 HOH HOH B . M 5 HOH 150 350 9 HOH HOH B . M 5 HOH 151 351 71 HOH HOH B . M 5 HOH 152 352 245 HOH HOH B . M 5 HOH 153 353 64 HOH HOH B . M 5 HOH 154 354 66 HOH HOH B . M 5 HOH 155 355 25 HOH HOH B . M 5 HOH 156 356 10 HOH HOH B . M 5 HOH 157 357 28 HOH HOH B . M 5 HOH 158 358 142 HOH HOH B . M 5 HOH 159 359 207 HOH HOH B . M 5 HOH 160 360 21 HOH HOH B . M 5 HOH 161 361 116 HOH HOH B . M 5 HOH 162 362 107 HOH HOH B . M 5 HOH 163 363 186 HOH HOH B . M 5 HOH 164 364 172 HOH HOH B . M 5 HOH 165 365 97 HOH HOH B . M 5 HOH 166 366 208 HOH HOH B . M 5 HOH 167 367 38 HOH HOH B . M 5 HOH 168 368 34 HOH HOH B . M 5 HOH 169 369 6 HOH HOH B . M 5 HOH 170 370 14 HOH HOH B . M 5 HOH 171 371 159 HOH HOH B . M 5 HOH 172 372 75 HOH HOH B . M 5 HOH 173 373 43 HOH HOH B . M 5 HOH 174 374 141 HOH HOH B . M 5 HOH 175 375 104 HOH HOH B . M 5 HOH 176 376 180 HOH HOH B . M 5 HOH 177 377 125 HOH HOH B . M 5 HOH 178 378 156 HOH HOH B . M 5 HOH 179 379 205 HOH HOH B . M 5 HOH 180 380 80 HOH HOH B . M 5 HOH 181 381 217 HOH HOH B . M 5 HOH 182 382 124 HOH HOH B . M 5 HOH 183 383 196 HOH HOH B . M 5 HOH 184 384 45 HOH HOH B . M 5 HOH 185 385 155 HOH HOH B . M 5 HOH 186 386 149 HOH HOH B . M 5 HOH 187 387 29 HOH HOH B . M 5 HOH 188 388 182 HOH HOH B . M 5 HOH 189 389 96 HOH HOH B . M 5 HOH 190 390 225 HOH HOH B . M 5 HOH 191 391 82 HOH HOH B . M 5 HOH 192 392 226 HOH HOH B . M 5 HOH 193 393 46 HOH HOH B . M 5 HOH 194 394 194 HOH HOH B . M 5 HOH 195 395 161 HOH HOH B . M 5 HOH 196 396 158 HOH HOH B . M 5 HOH 197 397 183 HOH HOH B . M 5 HOH 198 398 160 HOH HOH B . M 5 HOH 199 399 135 HOH HOH B . M 5 HOH 200 400 206 HOH HOH B . M 5 HOH 201 401 248 HOH HOH B . M 5 HOH 202 402 247 HOH HOH B . M 5 HOH 203 403 209 HOH HOH B . M 5 HOH 204 404 11 HOH HOH B . M 5 HOH 205 405 211 HOH HOH B . M 5 HOH 206 406 154 HOH HOH B . M 5 HOH 207 407 109 HOH HOH B . M 5 HOH 208 408 169 HOH HOH B . M 5 HOH 209 409 185 HOH HOH B . M 5 HOH 210 410 210 HOH HOH B . M 5 HOH 211 411 115 HOH HOH B . M 5 HOH 212 412 171 HOH HOH B . M 5 HOH 213 413 130 HOH HOH B . M 5 HOH 214 414 138 HOH HOH B . M 5 HOH 215 415 33 HOH HOH B . M 5 HOH 216 416 101 HOH HOH B . M 5 HOH 217 417 221 HOH HOH B . M 5 HOH 218 418 61 HOH HOH B . M 5 HOH 219 419 242 HOH HOH B . M 5 HOH 220 420 131 HOH HOH B . M 5 HOH 221 421 198 HOH HOH B . M 5 HOH 222 422 168 HOH HOH B . M 5 HOH 223 423 146 HOH HOH B . M 5 HOH 224 424 4 HOH HOH B . M 5 HOH 225 425 246 HOH HOH B . M 5 HOH 226 426 151 HOH HOH B . M 5 HOH 227 427 112 HOH HOH B . M 5 HOH 228 428 203 HOH HOH B . M 5 HOH 229 429 136 HOH HOH B . M 5 HOH 230 430 174 HOH HOH B . M 5 HOH 231 431 193 HOH HOH B . M 5 HOH 232 432 133 HOH HOH B . M 5 HOH 233 433 153 HOH HOH B . M 5 HOH 234 434 199 HOH HOH B . M 5 HOH 235 435 204 HOH HOH B . M 5 HOH 236 436 241 HOH HOH B . M 5 HOH 237 437 223 HOH HOH B . M 5 HOH 238 438 236 HOH HOH B . M 5 HOH 239 439 235 HOH HOH B . M 5 HOH 240 440 232 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-22 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14-3260 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 6UBU _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 202 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 417 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 C OP3 O N N 45 C P P N N 46 C OP1 O N N 47 C OP2 O N N 48 C "O5'" O N N 49 C "C5'" C N N 50 C "C4'" C N R 51 C "O4'" O N N 52 C "C3'" C N S 53 C "O3'" O N N 54 C "C2'" C N R 55 C "O2'" O N N 56 C "C1'" C N R 57 C N1 N N N 58 C C2 C N N 59 C O2 O N N 60 C N3 N N N 61 C C4 C N N 62 C N4 N N N 63 C C5 C N N 64 C C6 C N N 65 C HOP3 H N N 66 C HOP2 H N N 67 C "H5'" H N N 68 C "H5''" H N N 69 C "H4'" H N N 70 C "H3'" H N N 71 C "HO3'" H N N 72 C "H2'" H N N 73 C "HO2'" H N N 74 C "H1'" H N N 75 C H41 H N N 76 C H42 H N N 77 C H5 H N N 78 C H6 H N N 79 G OP3 O N N 80 G P P N N 81 G OP1 O N N 82 G OP2 O N N 83 G "O5'" O N N 84 G "C5'" C N N 85 G "C4'" C N R 86 G "O4'" O N N 87 G "C3'" C N S 88 G "O3'" O N N 89 G "C2'" C N R 90 G "O2'" O N N 91 G "C1'" C N R 92 G N9 N Y N 93 G C8 C Y N 94 G N7 N Y N 95 G C5 C Y N 96 G C6 C N N 97 G O6 O N N 98 G N1 N N N 99 G C2 C N N 100 G N2 N N N 101 G N3 N N N 102 G C4 C Y N 103 G HOP3 H N N 104 G HOP2 H N N 105 G "H5'" H N N 106 G "H5''" H N N 107 G "H4'" H N N 108 G "H3'" H N N 109 G "HO3'" H N N 110 G "H2'" H N N 111 G "HO2'" H N N 112 G "H1'" H N N 113 G H8 H N N 114 G H1 H N N 115 G H21 H N N 116 G H22 H N N 117 GUN N9 N Y N 118 GUN C8 C Y N 119 GUN N7 N Y N 120 GUN C5 C Y N 121 GUN C6 C N N 122 GUN O6 O N N 123 GUN N1 N N N 124 GUN C2 C N N 125 GUN N2 N N N 126 GUN N3 N N N 127 GUN C4 C Y N 128 GUN HN9 H N N 129 GUN H8 H N N 130 GUN HN1 H N N 131 GUN HN21 H N N 132 GUN HN22 H N N 133 HOH O O N N 134 HOH H1 H N N 135 HOH H2 H N N 136 NCO CO CO N N 137 NCO N1 N N N 138 NCO N2 N N N 139 NCO N3 N N N 140 NCO N4 N N N 141 NCO N5 N N N 142 NCO N6 N N N 143 NCO HN11 H N N 144 NCO HN12 H N N 145 NCO HN13 H N N 146 NCO HN21 H N N 147 NCO HN22 H N N 148 NCO HN23 H N N 149 NCO HN31 H N N 150 NCO HN32 H N N 151 NCO HN33 H N N 152 NCO HN41 H N N 153 NCO HN42 H N N 154 NCO HN43 H N N 155 NCO HN51 H N N 156 NCO HN52 H N N 157 NCO HN53 H N N 158 NCO HN61 H N N 159 NCO HN62 H N N 160 NCO HN63 H N N 161 U OP3 O N N 162 U P P N N 163 U OP1 O N N 164 U OP2 O N N 165 U "O5'" O N N 166 U "C5'" C N N 167 U "C4'" C N R 168 U "O4'" O N N 169 U "C3'" C N S 170 U "O3'" O N N 171 U "C2'" C N R 172 U "O2'" O N N 173 U "C1'" C N R 174 U N1 N N N 175 U C2 C N N 176 U O2 O N N 177 U N3 N N N 178 U C4 C N N 179 U O4 O N N 180 U C5 C N N 181 U C6 C N N 182 U HOP3 H N N 183 U HOP2 H N N 184 U "H5'" H N N 185 U "H5''" H N N 186 U "H4'" H N N 187 U "H3'" H N N 188 U "HO3'" H N N 189 U "H2'" H N N 190 U "HO2'" H N N 191 U "H1'" H N N 192 U H3 H N N 193 U H5 H N N 194 U H6 H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACT C O doub N N 40 ACT C OXT sing N N 41 ACT C CH3 sing N N 42 ACT CH3 H1 sing N N 43 ACT CH3 H2 sing N N 44 ACT CH3 H3 sing N N 45 C OP3 P sing N N 46 C OP3 HOP3 sing N N 47 C P OP1 doub N N 48 C P OP2 sing N N 49 C P "O5'" sing N N 50 C OP2 HOP2 sing N N 51 C "O5'" "C5'" sing N N 52 C "C5'" "C4'" sing N N 53 C "C5'" "H5'" sing N N 54 C "C5'" "H5''" sing N N 55 C "C4'" "O4'" sing N N 56 C "C4'" "C3'" sing N N 57 C "C4'" "H4'" sing N N 58 C "O4'" "C1'" sing N N 59 C "C3'" "O3'" sing N N 60 C "C3'" "C2'" sing N N 61 C "C3'" "H3'" sing N N 62 C "O3'" "HO3'" sing N N 63 C "C2'" "O2'" sing N N 64 C "C2'" "C1'" sing N N 65 C "C2'" "H2'" sing N N 66 C "O2'" "HO2'" sing N N 67 C "C1'" N1 sing N N 68 C "C1'" "H1'" sing N N 69 C N1 C2 sing N N 70 C N1 C6 sing N N 71 C C2 O2 doub N N 72 C C2 N3 sing N N 73 C N3 C4 doub N N 74 C C4 N4 sing N N 75 C C4 C5 sing N N 76 C N4 H41 sing N N 77 C N4 H42 sing N N 78 C C5 C6 doub N N 79 C C5 H5 sing N N 80 C C6 H6 sing N N 81 G OP3 P sing N N 82 G OP3 HOP3 sing N N 83 G P OP1 doub N N 84 G P OP2 sing N N 85 G P "O5'" sing N N 86 G OP2 HOP2 sing N N 87 G "O5'" "C5'" sing N N 88 G "C5'" "C4'" sing N N 89 G "C5'" "H5'" sing N N 90 G "C5'" "H5''" sing N N 91 G "C4'" "O4'" sing N N 92 G "C4'" "C3'" sing N N 93 G "C4'" "H4'" sing N N 94 G "O4'" "C1'" sing N N 95 G "C3'" "O3'" sing N N 96 G "C3'" "C2'" sing N N 97 G "C3'" "H3'" sing N N 98 G "O3'" "HO3'" sing N N 99 G "C2'" "O2'" sing N N 100 G "C2'" "C1'" sing N N 101 G "C2'" "H2'" sing N N 102 G "O2'" "HO2'" sing N N 103 G "C1'" N9 sing N N 104 G "C1'" "H1'" sing N N 105 G N9 C8 sing Y N 106 G N9 C4 sing Y N 107 G C8 N7 doub Y N 108 G C8 H8 sing N N 109 G N7 C5 sing Y N 110 G C5 C6 sing N N 111 G C5 C4 doub Y N 112 G C6 O6 doub N N 113 G C6 N1 sing N N 114 G N1 C2 sing N N 115 G N1 H1 sing N N 116 G C2 N2 sing N N 117 G C2 N3 doub N N 118 G N2 H21 sing N N 119 G N2 H22 sing N N 120 G N3 C4 sing N N 121 GUN N9 C8 sing Y N 122 GUN N9 C4 sing Y N 123 GUN N9 HN9 sing N N 124 GUN C8 N7 doub Y N 125 GUN C8 H8 sing N N 126 GUN N7 C5 sing Y N 127 GUN C5 C6 sing N N 128 GUN C5 C4 doub Y N 129 GUN C6 O6 doub N N 130 GUN C6 N1 sing N N 131 GUN N1 C2 sing N N 132 GUN N1 HN1 sing N N 133 GUN C2 N2 sing N N 134 GUN C2 N3 doub N N 135 GUN N2 HN21 sing N N 136 GUN N2 HN22 sing N N 137 GUN N3 C4 sing N N 138 HOH O H1 sing N N 139 HOH O H2 sing N N 140 NCO CO N1 sing N N 141 NCO CO N2 sing N N 142 NCO CO N3 sing N N 143 NCO CO N4 sing N N 144 NCO CO N5 sing N N 145 NCO CO N6 sing N N 146 NCO N1 HN11 sing N N 147 NCO N1 HN12 sing N N 148 NCO N1 HN13 sing N N 149 NCO N2 HN21 sing N N 150 NCO N2 HN22 sing N N 151 NCO N2 HN23 sing N N 152 NCO N3 HN31 sing N N 153 NCO N3 HN32 sing N N 154 NCO N3 HN33 sing N N 155 NCO N4 HN41 sing N N 156 NCO N4 HN42 sing N N 157 NCO N4 HN43 sing N N 158 NCO N5 HN51 sing N N 159 NCO N5 HN52 sing N N 160 NCO N5 HN53 sing N N 161 NCO N6 HN61 sing N N 162 NCO N6 HN62 sing N N 163 NCO N6 HN63 sing N N 164 U OP3 P sing N N 165 U OP3 HOP3 sing N N 166 U P OP1 doub N N 167 U P OP2 sing N N 168 U P "O5'" sing N N 169 U OP2 HOP2 sing N N 170 U "O5'" "C5'" sing N N 171 U "C5'" "C4'" sing N N 172 U "C5'" "H5'" sing N N 173 U "C5'" "H5''" sing N N 174 U "C4'" "O4'" sing N N 175 U "C4'" "C3'" sing N N 176 U "C4'" "H4'" sing N N 177 U "O4'" "C1'" sing N N 178 U "C3'" "O3'" sing N N 179 U "C3'" "C2'" sing N N 180 U "C3'" "H3'" sing N N 181 U "O3'" "HO3'" sing N N 182 U "C2'" "O2'" sing N N 183 U "C2'" "C1'" sing N N 184 U "C2'" "H2'" sing N N 185 U "O2'" "HO2'" sing N N 186 U "C1'" N1 sing N N 187 U "C1'" "H1'" sing N N 188 U N1 C2 sing N N 189 U N1 C6 sing N N 190 U C2 O2 doub N N 191 U C2 N3 sing N N 192 U N3 C4 sing N N 193 U N3 H3 sing N N 194 U C4 O4 doub N N 195 U C4 C5 sing N N 196 U C5 C6 doub N N 197 U C5 H5 sing N N 198 U C6 H6 sing N N 199 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6UBU 'double helix' 6UBU 'a-form double helix' 6UBU 'mismatched base pair' 6UBU 'internal loop' 6UBU 'triple helix' 6UBU 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 67 1_555 -0.471 -0.323 0.065 -1.084 -5.548 -11.096 1 B_G15:C81_B B 15 ? B 81 ? 19 1 1 A G 2 1_555 A C 66 1_555 0.288 -0.111 -0.099 -2.028 -14.514 1.260 2 B_G16:C80_B B 16 ? B 80 ? 19 1 1 A A 3 1_555 A U 65 1_555 0.138 -0.067 -0.112 -1.510 -14.028 1.141 3 B_A17:U79_B B 17 ? B 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 -0.332 -0.208 0.053 2.004 -16.447 1.460 4 B_C18:G78_B B 18 ? B 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 -0.013 -0.118 0.181 -3.086 -9.935 6.618 5 B_A19:U77_B B 19 ? B 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 0.080 -0.148 0.147 -10.758 -17.282 6.545 6 B_U20:A76_B B 20 ? B 76 ? 20 1 1 A A 7 1_555 A U 61 1_555 0.078 -0.113 0.201 -2.158 -15.476 1.116 7 B_A21:U75_B B 21 ? B 75 ? 20 1 1 A U 33 1_555 A U 37 1_555 3.478 -0.518 0.461 33.396 36.303 -74.644 8 B_U47:U51_B B 47 ? B 51 ? ? ? 1 A U 8 1_555 A A 38 1_555 -0.055 -0.117 -0.427 14.986 -2.441 1.743 9 B_U22:A52_B B 22 ? B 52 ? 20 1 1 A G 32 1_555 A C 39 1_555 -0.256 -0.083 -0.343 -20.131 -1.540 -1.425 10 B_G46:C53_B B 46 ? B 53 ? 19 1 1 A A 31 1_555 A U 11 1_555 0.142 -0.133 0.143 -1.302 -11.392 3.680 11 B_A45:U25_B B 45 ? B 25 ? 20 1 1 A A 30 1_555 A C 12 1_555 2.299 0.075 0.176 2.478 -10.611 17.326 12 B_A44:C26_B B 44 ? B 26 ? ? 1 1 A C 29 1_555 A G 13 1_555 0.257 -0.258 -0.016 8.913 -7.432 -0.128 13 B_C43:G27_B B 43 ? B 27 ? 19 1 1 A G 28 1_555 A C 14 1_555 0.042 -0.177 0.020 -4.669 -7.620 -0.399 14 B_G42:C28_B B 42 ? B 28 ? 19 1 1 A C 27 1_555 A G 15 1_555 0.286 -0.179 -0.025 -0.492 -13.312 0.351 15 B_C41:G29_B B 41 ? B 29 ? 19 1 1 A A 26 1_555 A U 16 1_555 0.059 -0.165 0.021 -4.377 -5.951 2.991 16 B_A40:U30_B B 40 ? B 30 ? 20 1 1 A C 25 1_555 A G 17 1_555 0.216 -0.186 0.094 -6.157 -5.783 1.189 17 B_C39:G31_B B 39 ? B 31 ? 19 1 1 A A 19 1_555 A A 52 1_555 4.089 1.527 -0.037 -11.388 -4.476 -112.420 18 B_A33:A66_B B 33 ? B 66 ? 5 4 1 A U 20 1_555 A A 51 1_555 4.111 -1.910 -0.321 -3.515 -2.061 -101.009 19 B_U34:A65_B B 34 ? B 65 ? 24 4 1 A A 21 1_555 A A 50 1_555 -4.206 1.362 0.391 -0.107 3.399 -110.635 20 B_A35:A64_B B 35 ? B 64 ? 5 4 1 A G 23 1_555 A C 47 1_555 -0.136 -0.222 0.624 4.008 -8.796 -3.888 21 B_G37:C61_B B 37 ? B 61 ? 19 1 1 A G 24 1_555 A C 46 1_555 -0.054 -0.037 0.499 20.610 -11.086 -0.325 22 B_G38:C60_B B 38 ? B 60 ? 19 1 1 A U 53 1_555 A A 45 1_555 -0.050 -0.097 0.049 6.798 -11.213 -2.147 23 B_U67:A59_B B 67 ? B 59 ? 20 1 1 A G 54 1_555 A C 44 1_555 -0.151 -0.174 0.136 -4.460 -14.825 -0.019 24 B_G68:C58_B B 68 ? B 58 ? 19 1 1 A U 55 1_555 A G 43 1_555 2.310 -0.712 0.095 -3.019 -13.360 -1.821 25 B_U69:G57_B B 69 ? B 57 ? 28 1 1 A C 56 1_555 A G 42 1_555 0.390 -0.198 0.158 -3.704 -12.915 -1.753 26 B_C70:G56_B B 70 ? B 56 ? 19 1 1 A C 57 1_555 A G 41 1_555 0.078 -0.151 0.136 6.382 -10.936 -1.740 27 B_C71:G55_B B 71 ? B 55 ? 19 1 1 A G 58 1_555 A C 40 1_555 -0.221 -0.236 0.175 3.681 -16.127 0.659 28 B_G72:C54_B B 72 ? B 54 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 67 1_555 A G 2 1_555 A C 66 1_555 0.338 -1.336 3.349 -1.311 2.704 35.203 -2.603 -0.753 3.227 4.461 2.162 35.327 1 BB_G15G16:C80C81_BB B 15 ? B 81 ? B 16 ? B 80 ? 1 A G 2 1_555 A C 66 1_555 A A 3 1_555 A U 65 1_555 -0.153 -1.249 3.083 -0.531 10.674 33.340 -3.507 0.184 2.576 18.037 0.897 34.965 2 BB_G16A17:U79C80_BB B 16 ? B 80 ? B 17 ? B 79 ? 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.729 -1.735 3.092 1.125 8.275 26.692 -5.309 -1.277 2.480 17.391 -2.365 27.945 3 BB_A17C18:G78U79_BB B 17 ? B 79 ? B 18 ? B 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 0.223 -1.424 3.299 -0.544 8.658 33.855 -3.626 -0.450 2.855 14.572 0.916 34.917 4 BB_C18A19:U77G78_BB B 18 ? B 78 ? B 19 ? B 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 -0.052 -1.379 3.416 1.454 15.728 30.350 -4.717 0.307 2.425 27.802 -2.570 34.129 5 BB_A19U20:A76U77_BB B 19 ? B 77 ? B 20 ? B 76 ? 1 A U 6 1_555 A A 62 1_555 A A 7 1_555 A U 61 1_555 0.468 -1.470 2.844 3.173 17.772 28.772 -4.692 -0.416 1.714 32.087 -5.729 33.865 6 BB_U20A21:U75A76_BB B 20 ? B 76 ? B 21 ? B 75 ? 1 A A 7 1_555 A U 61 1_555 A U 33 1_555 A U 37 1_555 2.413 0.340 6.448 -30.998 -163.530 49.199 2.839 -1.719 1.989 -85.642 16.234 167.677 7 BB_A21U47:U51U75_BB B 21 ? B 75 ? B 47 ? B 51 ? 1 A U 33 1_555 A U 37 1_555 A U 8 1_555 A A 38 1_555 0.022 0.958 -3.171 -0.395 -21.022 -3.959 -8.873 0.177 0.351 79.440 -1.494 -21.391 8 BB_U47U22:A52U51_BB B 47 ? B 51 ? B 22 ? B 52 ? 1 A U 8 1_555 A A 38 1_555 A G 32 1_555 A C 39 1_555 1.974 -0.235 -2.472 1.006 -9.851 -44.160 -0.373 2.499 -2.509 12.911 1.318 -45.203 9 BB_U22G46:C53A52_BB B 22 ? B 52 ? B 46 ? B 53 ? 1 A G 32 1_555 A C 39 1_555 A A 31 1_555 A U 11 1_555 -2.356 0.488 -3.556 -16.790 -6.241 -51.777 -0.981 -1.359 -4.009 6.915 -18.604 -54.585 10 BB_G46A45:U25C53_BB B 46 ? B 53 ? B 45 ? B 25 ? 1 A A 31 1_555 A U 11 1_555 A A 30 1_555 A C 12 1_555 0.361 2.457 -3.035 -1.950 -8.119 -23.770 -7.547 1.287 -2.060 18.977 -4.557 -25.174 11 BB_A45A44:C26U25_BB B 45 ? B 25 ? B 44 ? B 26 ? 1 A A 30 1_555 A C 12 1_555 A C 29 1_555 A G 13 1_555 -1.261 1.796 -3.434 -2.735 -7.845 -36.451 -3.848 -1.606 -3.079 12.344 -4.304 -37.354 12 BB_A44C43:G27C26_BB B 44 ? B 26 ? B 43 ? B 27 ? 1 A C 29 1_555 A G 13 1_555 A G 28 1_555 A C 14 1_555 0.698 2.117 -2.985 2.692 -3.245 -26.811 -5.237 0.887 -2.770 6.944 5.761 -27.135 13 BB_C43G42:C28G27_BB B 43 ? B 27 ? B 42 ? B 28 ? 1 A G 28 1_555 A C 14 1_555 A C 27 1_555 A G 15 1_555 -0.543 1.779 -3.215 -1.354 -9.783 -30.334 -4.853 -0.766 -2.553 18.102 -2.506 -31.865 14 BB_G42C41:G29C28_BB B 42 ? B 28 ? B 41 ? B 29 ? 1 A C 27 1_555 A G 15 1_555 A A 26 1_555 A U 16 1_555 -0.201 1.250 -3.212 -1.679 -10.973 -31.468 -3.865 -0.093 -2.646 19.489 -2.983 -33.322 15 BB_C41A40:U30G29_BB B 41 ? B 29 ? B 40 ? B 30 ? 1 A A 26 1_555 A U 16 1_555 A C 25 1_555 A G 17 1_555 0.740 1.749 -3.160 -1.677 -3.633 -31.364 -3.836 1.647 -2.902 6.687 -3.086 -31.612 16 BB_A40C39:G31U30_BB B 40 ? B 30 ? B 39 ? B 31 ? 1 A A 19 1_555 A A 52 1_555 A U 20 1_555 A A 51 1_555 0.107 -1.674 3.280 9.826 2.423 37.875 -2.786 1.009 3.102 3.654 -14.818 39.156 17 BB_A33U34:A65A66_BB B 33 ? B 66 ? B 34 ? B 65 ? 1 A U 20 1_555 A A 51 1_555 A A 21 1_555 A A 50 1_555 -3.827 4.111 3.571 -22.606 19.008 -19.525 -7.317 -6.950 -2.623 -36.845 -43.818 -35.286 18 BB_U34A35:A64A65_BB B 34 ? B 65 ? B 35 ? B 64 ? 1 A G 23 1_555 A C 47 1_555 A G 24 1_555 A C 46 1_555 0.533 -0.672 2.980 2.807 6.465 28.697 -2.551 -0.511 2.803 12.800 -5.558 29.532 19 BB_G37G38:C60C61_BB B 37 ? B 61 ? B 38 ? B 60 ? 1 A G 24 1_555 A C 46 1_555 A U 53 1_555 A A 45 1_555 -2.088 -0.434 3.372 -3.594 5.812 54.634 -0.830 2.037 3.434 6.305 3.899 55.027 20 BB_G38U67:A59C60_BB B 38 ? B 60 ? B 67 ? B 59 ? 1 A U 53 1_555 A A 45 1_555 A G 54 1_555 A C 44 1_555 0.083 -1.739 3.427 -0.368 6.771 33.281 -4.059 -0.201 3.023 11.672 0.634 33.946 21 BB_U67G68:C58A59_BB B 67 ? B 59 ? B 68 ? B 58 ? 1 A G 54 1_555 A C 44 1_555 A U 55 1_555 A G 43 1_555 -0.381 -1.257 3.181 0.833 1.150 43.523 -1.802 0.591 3.141 1.550 -1.122 43.545 22 BB_G68U69:G57C58_BB B 68 ? B 58 ? B 69 ? B 57 ? 1 A U 55 1_555 A G 43 1_555 A C 56 1_555 A G 42 1_555 -0.107 -1.547 3.036 4.664 8.431 27.075 -4.746 1.116 2.404 17.327 -9.586 28.708 23 BB_U69C70:G56G57_BB B 69 ? B 57 ? B 70 ? B 56 ? 1 A C 56 1_555 A G 42 1_555 A C 57 1_555 A G 41 1_555 0.111 -0.562 3.077 0.473 7.078 29.389 -2.403 -0.124 2.868 13.701 -0.915 30.215 24 BB_C70C71:G55G56_BB B 70 ? B 56 ? B 71 ? B 55 ? 1 A C 57 1_555 A G 41 1_555 A G 58 1_555 A C 40 1_555 0.834 -1.665 3.177 -0.134 9.067 33.983 -3.988 -1.399 2.656 15.181 0.224 35.137 25 BB_C71G72:C54G55_BB B 71 ? B 55 ? B 72 ? B 54 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01-GM073850 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GUN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GUN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 'ACETATE ION' ACT 4 GUANINE GUN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FE5 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #